Prupe.1G178300_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000016
Physical Location & Seq
Reverse (-)
15290862 .. 15291239
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G178300.1

Sequence Viewer

Length: 378 bp
ATGGGCCCATCACGAGAAATGACAATATTATGCTGGAATGTTCGTGGTCTGGGTAATCCACGAACATTTCGTGCTCTGAAGTACTTACTCAGAGACAAAAAGACCGATGTCATCTTCTTATCAGAAACCAAGAAGACGATACAACAAATGGCAGGTGTTAGTGCACAACTAGGAGCAATGGGTCATTTTAGTGTGAGTCGAAATAGTCGTGCTGGTGGATTGGCGTTATTGTGGCAGCACGGGGTGAAGGTTTCTATTCGATCCATTTCATCAGGGCATATTGATGTCATGATCGAGGGTGTGGCACAAACTTGTTTCCATTTTACGGGTTTTTATGGTAACCCAGAACTTGCATCGCGGAAATACTCTTGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RVT

Protein Analysis

126

Amino Acids

13.93

Weight (kDa)

10.01

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000016)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14281 FvH4_1g17621 FvH4_1g18471 FvH4_1g22021 FvH4_1g26014 FvH4_1g26331 FvH4_1g26332 FvH4_1g27351 FvH4_2g04721 FvH4_3g23731 FvH4_4g01641 FvH4_4g08952 FvH4_5g04831 FvH4_5g06181 FvH4_5g24782 FvH4_6g19793 FvH4_6g21830 FvH4_6g22052 FvH4_6g22781 FvH4_6g28711 FvH4_6g38132 FvH4_7g01611 FvH4_7g04461 FvH4_7g10253
malus_domestica MD12G1214900.v1.1
prunus_persica Prupe.1G178300_v2.0.a1 Prupe.2G081900_v2.0.a1 Prupe.7G035400_v2.0.a1 Prupe.8G101400_v2.0.a1
pyrus_communis pycom1094g00140 pycom11g05210 pycom15g38150
rosa_chinensis RchiOBHm_Chr0c45g0503781 RchiOBHm_Chr2g0127321 RchiOBHm_Chr2g0136131 RchiOBHm_Chr2g0137531 RchiOBHm_Chr3g0458071 RchiOBHm_Chr3g0468741 RchiOBHm_Chr4g0385261 RchiOBHm_Chr4g0398301 RchiOBHm_Chr4g0414741 RchiOBHm_Chr4g0427601 RchiOBHm_Chr5g0038191 RchiOBHm_Chr6g0264691 RchiOBHm_Chr7g0222611
rosa_laevigata RLG00000000450 RLG00000012411 RLG00000013342 RLG00000014003 RLG00000014274 RLG00000015222 RLG00000015327 RLG00000017257 RLG00000018284 RLG00000018325 RLG00000021633 RLG00000030959 RLG00000031522 RLG00000031692 RLG00000034534 RLG00000034656 RLG00000034719 RLG00000034775 RLG00000035707 RLG00000035994 RLG00000036662
rosa_multiflora Rmu_co7958827.1_g000001 Rmu_co7982736.1_g000001 Rmu_co7994068.1_g000001 Rmu_co8004766.1_g000001 Rmu_co8055616.1_g000001 Rmu_co8065842.1_g000001 Rmu_co8075422.1_g000001 Rmu_co8115052.1_g000001 Rmu_co8123540.1_g000001 Rmu_co8130588.1_g000001 Rmu_co8141300.1_g000001 Rmu_co8175458.1_g000001 Rmu_co8181142.1_g000001 Rmu_co8186168.1_g000001 Rmu_co8186320.1_g000001 Rmu_co8193972.1_g000001 Rmu_co8218810.1_g000001 Rmu_co8231243.1_g000001 Rmu_co8235827.1_g000001 Rmu_co8238175.1_g000001 Rmu_co8252519.1_g000001 Rmu_co8277813.1_g000001 Rmu_co8305149.1_g000001 Rmu_co8330153.1_g000001 Rmu_co8337761.1_g000001 Rmu_co8342667.1_g000001 Rmu_co8342835.1_g000001 Rmu_co8350369.1_g000001 Rmu_co8364117.1_g000001 Rmu_co8396865.1_g000001 Rmu_co8397583.1_g000001 Rmu_co8402971.1_g000001 Rmu_co8412027.1_g000001 Rmu_co8412027.1_g000002 Rmu_co8426061.1_g000001 Rmu_co8426061.1_g000002 Rmu_co8432275.1_g000001 Rmu_co8439531.1_g000001 Rmu_co8445913.1_g000001 Rmu_co8449645.1_g000001 Rmu_co8455737.1_g000001 Rmu_co8459617.1_g000001 Rmu_co8465509.1_g000001 Rmu_co8471819.1_g000001 Rmu_co8481247.1_g000001 Rmu_co8504529.1_g000001 Rmu_co8509881.1_g000001 Rmu_co8513417.1_g000001 Rmu_co8519167.1_g000002 Rmu_sc0000028.1_g000006 Rmu_sc0000030.1_g000003 Rmu_sc0000047.1_g000031 Rmu_sc0000084.1_g000023 Rmu_sc0000166.1_g000048 Rmu_sc0000335.1_g000038 Rmu_sc0000361.1_g000054 Rmu_sc0000363.1_g000059 Rmu_sc0000365.1_g000045 Rmu_sc0000367.1_g000153 Rmu_sc0000367.1_g000156 Rmu_sc0000367.1_g000157 Rmu_sc0000370.1_g000020 Rmu_sc0000371.1_g000009 Rmu_sc0000371.1_g000010 Rmu_sc0000371.1_g000037 Rmu_sc0000388.1_g000042 Rmu_sc0000388.1_g000051 Rmu_sc0000388.1_g000060 Rmu_sc0000395.1_g000004 Rmu_sc0000395.1_g000005 Rmu_sc0000447.1_g000006 Rmu_sc0000487.1_g000076 Rmu_sc0000499.1_g000009 Rmu_sc0000508.1_g000007 Rmu_sc0000511.1_g000014 Rmu_sc0000511.1_g000015 Rmu_sc0000516.1_g000028 Rmu_sc0000540.1_g000059 Rmu_sc0000543.1_g000053 Rmu_sc0000556.1_g000011 Rmu_sc0000565.1_g000039 Rmu_sc0000574.1_g000015 Rmu_sc0000575.1_g000008 Rmu_sc0000586.1_g000010 Rmu_sc0000663.1_g000017 Rmu_sc0000676.1_g000012 Rmu_sc0000717.1_g000020 Rmu_sc0000744.1_g000048 Rmu_sc0000764.1_g000004 Rmu_sc0000795.1_g000004 Rmu_sc0000805.1_g000018 Rmu_sc0000805.1_g000034 Rmu_sc0000806.1_g000035 Rmu_sc0000806.1_g000036 Rmu_sc0000838.1_g000013 Rmu_sc0000901.1_g000012 Rmu_sc0001062.1_g000012 Rmu_sc0001075.1_g000024 Rmu_sc0001126.1_g000009 Rmu_sc0001136.1_g000047 Rmu_sc0001143.1_g000025 Rmu_sc0001211.1_g000064 Rmu_sc0001291.1_g000032 Rmu_sc0001385.1_g000001 Rmu_sc0001387.1_g000007 Rmu_sc0001405.1_g000010 Rmu_sc0001433.1_g000034 Rmu_sc0001468.1_g000005 Rmu_sc0001516.1_g000071 Rmu_sc0001544.1_g000029 Rmu_sc0001556.1_g000005 Rmu_sc0001565.1_g000015 Rmu_sc0001569.1_g000001 Rmu_sc0001572.1_g000021 Rmu_sc0001619.1_g000008 Rmu_sc0001623.1_g000004 Rmu_sc0001625.1_g000004 Rmu_sc0001631.1_g000011 Rmu_sc0001653.1_g000032 Rmu_sc0001654.1_g000022 Rmu_sc0001701.1_g000018 Rmu_sc0001749.1_g000001 Rmu_sc0001764.1_g000002 Rmu_sc0001764.1_g000003 Rmu_sc0001793.1_g000058 Rmu_sc0001793.1_g000059 Rmu_sc0001836.1_g000041 Rmu_sc0001850.1_g000008 Rmu_sc0001911.1_g000004 Rmu_sc0002070.1_g000016 Rmu_sc0002070.1_g000032 Rmu_sc0002094.1_g000003 Rmu_sc0002107.1_g000010 Rmu_sc0002116.1_g000005 Rmu_sc0002132.1_g000014 Rmu_sc0002138.1_g000003 Rmu_sc0002192.1_g000015 Rmu_sc0002244.1_g000047 Rmu_sc0002269.1_g000020 Rmu_sc0002271.1_g000008 Rmu_sc0002283.1_g000011 Rmu_sc0002343.1_g000061 Rmu_sc0002343.1_g000074 Rmu_sc0002369.1_g000002 Rmu_sc0002403.1_g000003 Rmu_sc0002425.1_g000011 Rmu_sc0002425.1_g000012 Rmu_sc0002447.1_g000017 Rmu_sc0002494.1_g000013 Rmu_sc0002515.1_g000006 Rmu_sc0002515.1_g000007 Rmu_sc0002529.1_g000018 Rmu_sc0002556.1_g000010 Rmu_sc0002586.1_g000010 Rmu_sc0002693.1_g000012 Rmu_sc0002725.1_g000002 Rmu_sc0002738.1_g000006 Rmu_sc0002754.1_g000037 Rmu_sc0002776.1_g000038 Rmu_sc0002793.1_g000008 Rmu_sc0002840.1_g000003 Rmu_sc0002843.1_g000013 Rmu_sc0002843.1_g000014 Rmu_sc0002848.1_g000015 Rmu_sc0002858.1_g000011 Rmu_sc0002927.1_g000005 Rmu_sc0002955.1_g000018 Rmu_sc0002964.1_g000006 Rmu_sc0002986.1_g000055 Rmu_sc0003064.1_g000003 Rmu_sc0003110.1_g000023 Rmu_sc0003124.1_g000014 Rmu_sc0003226.1_g000009 Rmu_sc0003337.1_g000037 Rmu_sc0003387.1_g000002 Rmu_sc0003443.1_g000021 Rmu_sc0003475.1_g000023 Rmu_sc0003669.1_g000033 Rmu_sc0003722.1_g000039 Rmu_sc0003804.1_g000008 Rmu_sc0003804.1_g000009 Rmu_sc0003809.1_g000015 Rmu_sc0003858.1_g000005 Rmu_sc0003919.1_g000010 Rmu_sc0003919.1_g000011 Rmu_sc0004010.1_g000015 Rmu_sc0004036.1_g000004 Rmu_sc0004086.1_g000014 Rmu_sc0004115.1_g000017 Rmu_sc0004133.1_g000013 Rmu_sc0004139.1_g000002 Rmu_sc0004154.1_g000016 Rmu_sc0004165.1_g000088 Rmu_sc0004206.1_g000010 Rmu_sc0004212.1_g000006 Rmu_sc0004213.1_g000007 Rmu_sc0004331.1_g000018 Rmu_sc0004469.1_g000002 Rmu_sc0004565.1_g000004 Rmu_sc0004574.1_g000059 Rmu_sc0004591.1_g000009 Rmu_sc0004610.1_g000004 Rmu_sc0004610.1_g000005 Rmu_sc0004683.1_g000008 Rmu_sc0004723.1_g000003 Rmu_sc0004795.1_g000006 Rmu_sc0004825.1_g000009 Rmu_sc0004841.1_g000043 Rmu_sc0005039.1_g000005 Rmu_sc0005046.1_g000017 Rmu_sc0005173.1_g000012 Rmu_sc0005197.1_g000005 Rmu_sc0005255.1_g000043 Rmu_sc0005285.1_g000010 Rmu_sc0005310.1_g000051 Rmu_sc0005379.1_g000004 Rmu_sc0005385.1_g000015 Rmu_sc0005416.1_g000030 Rmu_sc0005652.1_g000015 Rmu_sc0005745.1_g000015 Rmu_sc0005748.1_g000007 Rmu_sc0005913.1_g000013 Rmu_sc0005950.1_g000016 Rmu_sc0006028.1_g000010 Rmu_sc0006153.1_g000025 Rmu_sc0006184.1_g000021 Rmu_sc0006240.1_g000001 Rmu_sc0006266.1_g000058 Rmu_sc0006323.1_g000013 Rmu_sc0006410.1_g000011 Rmu_sc0006452.1_g000010 Rmu_sc0006537.1_g000008 Rmu_sc0006669.1_g000011 Rmu_sc0006683.1_g000017 Rmu_sc0006691.1_g000004 Rmu_sc0006691.1_g000005 Rmu_sc0006743.1_g000004 Rmu_sc0006793.1_g000001 Rmu_sc0006793.1_g000002 Rmu_sc0006824.1_g000020 Rmu_sc0006959.1_g000018 Rmu_sc0007006.1_g000003 Rmu_sc0007130.1_g000009 Rmu_sc0007221.1_g000004 Rmu_sc0007222.1_g000004 Rmu_sc0007237.1_g000007 Rmu_sc0007292.1_g000013 Rmu_sc0007402.1_g000004 Rmu_sc0007475.1_g000009 Rmu_sc0007635.1_g000001 Rmu_sc0007742.1_g000023 Rmu_sc0007742.1_g000024 Rmu_sc0007802.1_g000033 Rmu_sc0007833.1_g000002 Rmu_sc0007994.1_g000002 Rmu_sc0007994.1_g000003 Rmu_sc0008079.1_g000002 Rmu_sc0008192.1_g000009 Rmu_sc0008529.1_g000021 Rmu_sc0008546.1_g000003 Rmu_sc0008564.1_g000001 Rmu_sc0008676.1_g000026 Rmu_sc0008713.1_g000017 Rmu_sc0008834.1_g000004 Rmu_sc0008967.1_g000017 Rmu_sc0009073.1_g000001 Rmu_sc0009449.1_g000002 Rmu_sc0009674.1_g000003 Rmu_sc0009725.1_g000006 Rmu_sc0010019.1_g000012 Rmu_sc0010132.1_g000034 Rmu_sc0010190.1_g000005 Rmu_sc0010221.1_g000003 Rmu_sc0010224.1_g000002 Rmu_sc0010242.1_g000005 Rmu_sc0010262.1_g000002 Rmu_sc0010338.1_g000011 Rmu_sc0010368.1_g000003 Rmu_sc0010533.1_g000001 Rmu_sc0011216.1_g000005 Rmu_sc0011272.1_g000003 Rmu_sc0011582.1_g000011 Rmu_sc0011585.1_g000002 Rmu_sc0011851.1_g000003 Rmu_sc0011851.1_g000006 Rmu_sc0011917.1_g000001 Rmu_sc0012031.1_g000005 Rmu_sc0012591.1_g000001 Rmu_sc0012856.1_g000014 Rmu_sc0013107.1_g000001 Rmu_sc0013545.1_g000001 Rmu_sc0013783.1_g000005 Rmu_sc0013801.1_g000004 Rmu_sc0013980.1_g000004 Rmu_sc0014006.1_g000006 Rmu_sc0014097.1_g000013 Rmu_sc0014404.1_g000011 Rmu_sc0015273.1_g000001 Rmu_sc0015957.1_g000003 Rmu_sc0015996.1_g000001 Rmu_sc0016141.1_g000011 Rmu_sc0016264.1_g000003 Rmu_sc0017005.1_g000007 Rmu_sc0017112.1_g000001 Rmu_sc0017245.1_g000001 Rmu_sc0018139.1_g000001 Rmu_sc0018325.1_g000007 Rmu_sc0018528.1_g000005 Rmu_sc0018646.1_g000003 Rmu_sc0019157.1_g000002 Rmu_sc0019342.1_g000001 Rmu_sc0019693.1_g000001 Rmu_sc0019742.1_g000003 Rmu_sc0020648.1_g000001 Rmu_sc0021123.1_g000002 Rmu_sc0022252.1_g000001 Rmu_sc0022252.1_g000002 Rmu_sc0023534.1_g000004 Rmu_sc0023853.1_g000003 Rmu_sc0024187.1_g000001 Rmu_sc0024395.1_g000001 Rmu_sc0024668.1_g000001 Rmu_sc0025262.1_g000001 Rmu_sc0026159.1_g000001 Rmu_sc0026159.1_g000002 Rmu_sc0026590.1_g000003 Rmu_sc0027036.1_g000008 Rmu_sc0027184.1_g000006 Rmu_sc0027690.1_g000002 Rmu_sc0030913.1_g000001 Rmu_sc0032471.1_g000002 Rmu_sc0033139.1_g000001 Rmu_sc0033765.1_g000002 Rmu_sc0034257.1_g000002 Rmu_sc0034655.1_g000001 Rmu_sc0035277.1_g000001 Rmu_sc0035833.1_g000001 Rmu_sc0037386.1_g000002 Rmu_sc0042113.1_g000001 Rmu_sc0042241.1_g000001 Rmu_ssc0000011.1_g000022 Rmu_ssc0000026.1_g000004 Rmu_ssc0000042.1_g000015 Rmu_ssc0000071.1_g000003 Rmu_ssc0000087.1_g000002 Rmu_ssc0000091.1_g000023 Rmu_ssc0000120.1_g000002 Rmu_ssc0000127.1_g000002 Rmu_ssc0000151.1_g000019 Rmu_ssc0000197.1_g000021 Rmu_ssc0000215.1_g000014 Rmu_ssc0000240.1_g000011 Rmu_ssc0000252.1_g000035 Rmu_ssc0000255.1_g000075 Rmu_ssc0000377.1_g000026 Rmu_ssc0000388.1_g000055 Rmu_ssc0000391.1_g000010 Rmu_ssc0000395.1_g000043 Rmu_ssc0000432.1_g000011 Rmu_ssc0000432.1_g000045 Rmu_ssc0000432.1_g000084
rosa_roxburghii Rroxscaffold_1G00003990 Rroxscaffold_1G00032350 Rroxscaffold_2G00104520 Rroxscaffold_2G00114410 Rroxscaffold_3G00261440 Rroxscaffold_5G00340750 Rroxscaffold_5G00344400 Rroxscaffold_5G00360340 Rroxscaffold_6G00400850 Rroxscaffold_7G00187980 Rroxscaffold_7G00191360
rosa_rugosa Rorug01G0062600 Rorug01G0235400 Rorug01G0286700 Rorug01G0286800 Rorug01G0332400 Rorug01G0332900 Rorug02G0087500 Rorug02G0110000.1 Rorug02G0114100 Rorug02G0262600 Rorug02G0330000 Rorug03G0232500 Rorug04G0022800 Rorug04G0038200 Rorug04G0114000 Rorug04G0158400 Rorug05G0168700 Rorug05G0171500 Rorug05G0206300 Rorug05G0225600 Rorug05G0256100 Rorug05G0263900 Rorug05G0317700 Rorug05G0341300 Rorug05G0389400 Rorug05G0393000 Rorug05G0393000 Rorug05G0511600 Rorug05G0586200 Rorug06G0124100 Rorug06G0124200 Rorug06G0509200 Rorug07G0197400 Rorug07G0198900 Rorug07G0289300 Rorug07G0289400.1 Rorug07G0294900
rosa_samantha Rh1AG125600 Rh1BG063800 Rh1BG063900 Rh1BG151300 Rh1BG172600 Rh1CG061300 Rh1DG100800 Rh1DG122100 Rh1DG202600 Rh2AG031700 Rh2AG179100 Rh2AG215600 Rh2AG226900 Rh2AG257200 Rh2AG296600 Rh2AG420600 Rh2AG501700 Rh2AG631000 Rh2BG203000 Rh2CG062400 Rh2CG263600 Rh2CG563700 Rh2DG031200 Rh2DG320600 Rh2DG572400 Rh3CG209000 Rh3CG215500 Rh3CG234400 Rh3CG280600 Rh3CG336200 Rh3DG334900 Rh3DG339300 Rh4AG215100 Rh4AG340100 Rh4BG070800 Rh4BG096700 Rh4BG224600 Rh4BG262700 Rh4CG004600 Rh4CG196600 Rh4CG196700 Rh4CG196800 Rh4DG342500 Rh5AG066500 Rh5AG248900 Rh5AG424500 Rh5AG432600 Rh5BG115800 Rh5BG169600 Rh5CG066900 Rh5CG221400 Rh5CG227600 Rh5CG257700 Rh5CG266400 Rh5CG284700 Rh5CG319500 Rh5CG363800 Rh5CG379900 Rh5DG123900 Rh5DG367800 Rh5DG472100 Rh5DG515000 Rh5DG518000 Rh5DG548100 Rh6AG085900 Rh6AG092100 Rh6CG188200 Rh6CG190400 Rh6DG188700 Rh6DG277200 Rh6DG459400 Rh7AG010600 Rh7AG225900 Rh7AG316900 Rh7AG321000 Rh7AG483600 Rh7BG142800 Rh7DG047400 Rh7DG114300 Rh7DG143800 Rh7DG233100 Rh7DG244700 Rh7DG254300 Rh7DG327600 Rh7DG345200 Rh7DG378400
rosa_wichuraiana Rw3G012560 Rw3G022840 Rw4G003390 Rw5G027110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
AccII CGCG 1 cut(s) 358
AciI CCGC 1 cut(s) 358
AclWI GGATC 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 98
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 325
Alw21I GWGCWC 2 cut(s) 76, 166
Alw26I GTCTC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 162
AlwI GGATC 1 cut(s) 255
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 4, 5
AsuHPI GGTGA 1 cut(s) 256
BaeGI GKGCMC 2 cut(s) 8, 166
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 2 cut(s) 76, 166
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmcAI AGTACT 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 362
BoxI GACNNNNGTC 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 103
BseSI GKGCMC 2 cut(s) 8, 166
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 1 cut(s) 6
BsiHKAI GWGCWC 2 cut(s) 76, 166
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 1 cut(s) 6
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 76, 166
Bsp143I GATC 2 cut(s) 260, 291
BspACI CCGC 1 cut(s) 358
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 102
BspFNI CGCG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 183
BssMI GATC 2 cut(s) 260, 291
BssSI CACGAG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 89
BstEII GGTNACC 1 cut(s) 338
BstFNI CGCG 1 cut(s) 358
BstKTI GATC 2 cut(s) 263, 294
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 260, 291
BstPAI GACNNNNGTC 1 cut(s) 107
BstPI GGTNACC 1 cut(s) 338
BstSLI GKGCMC 2 cut(s) 8, 166
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 143
CciI TCATGA 1 cut(s) 288
Cfr13I GGNCC 2 cut(s) 4, 5
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 289
CviJI RGCY 1 cut(s) 6
CviKI_1 RGCY 1 cut(s) 6
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 89
DpnI GATC 2 cut(s) 262, 293
DpnII GATC 2 cut(s) 260, 291
DraIII CACNNNGTG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 98
Eco91I GGTNACC 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 292
FaiI YATR 4 cut(s) 31, 279, 290, 336
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 6
Hin1II CATG 1 cut(s) 292
HinfI GANTC 1 cut(s) 196
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 3 cut(s) 78, 92, 124
Hpy188III TCNNGA 2 cut(s) 12, 289
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 164, 353
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 2 cut(s) 260, 291
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 6 cut(s) 19, 35, 138, 198, 258, 357
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 362
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 338
MalI GATC 2 cut(s) 262, 293
MboI GATC 2 cut(s) 260, 291
MboII GAAGA 2 cut(s) 106, 145
MhlI GDGCHC 3 cut(s) 8, 76, 166
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 1 cut(s) 289
MslI CAYNNNNRTG 2 cut(s) 189, 282
MvnI CGCG 1 cut(s) 358
NdeII GATC 2 cut(s) 260, 291
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 288
PaqCI CACCTGC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 67, 205
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PshAI GACNNNNGTC 1 cut(s) 107
PspEI GGTNACC 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 6
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 2 cut(s) 189, 282
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 260, 291
Sau96I GGNCC 2 cut(s) 4, 5
ScaI AGTACT 1 cut(s) 83
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 3 cut(s) 8, 76, 166
SetI ASST 2 cut(s) 157, 252
SfaNI GCATC 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 189, 282
SsiI CCGC 1 cut(s) 358
SspI AATATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 170
TaqI TCGA 3 cut(s) 199, 259, 294
TaqII GACCGA 1 cut(s) 119
TatI WGTACW 1 cut(s) 81
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 258
VneI GTGCAC 1 cut(s) 162
XspI CTAG 1 cut(s) 170
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.