ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 348 |
| AccII | CGCG | 1 cut(s) | 9 |
| AciI | CCGC | 2 cut(s) | 9, 126 |
| AclWI | GGATC | 1 cut(s) | 59 |
| AcvI | CACGTG | 1 cut(s) | 528 |
| AfaI | GTAC | 2 cut(s) | 140, 541 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 198, 334 |
| AflII | CTTAAG | 1 cut(s) | 41 |
| AgeI | ACCGGT | 1 cut(s) | 445 |
| AgsI | TTSAA | 1 cut(s) | 34 |
| AleI | CACNNNNGTG | 1 cut(s) | 346 |
| AluBI | AGCT | 3 cut(s) | 49, 121, 590 |
| AluI | AGCT | 3 cut(s) | 49, 121, 590 |
| Alw26I | GTCTC | 2 cut(s) | 316, 432 |
| AlwI | GGATC | 1 cut(s) | 59 |
| AoxI | GGCC | 2 cut(s) | 189, 515 |
| ApeKI | GCWGC | 2 cut(s) | 584, 587 |
| AseI | ATTAAT | 1 cut(s) | 480 |
| AsiGI | ACCGGT | 1 cut(s) | 445 |
| AspLEI | GCGC | 2 cut(s) | 9, 165 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| BanI | GGYRCC | 1 cut(s) | 348 |
| BanII | GRGCYC | 1 cut(s) | 61 |
| BauI | CACGAG | 1 cut(s) | 608 |
| BbrPI | CACGTG | 1 cut(s) | 528 |
| BbsI | GAAGAC | 1 cut(s) | 280 |
| BbvI | GCAGC | 2 cut(s) | 596, 599 |
| BccI | CCATC | 3 cut(s) | 106, 263, 451 |
| BclI | TGATCA | 1 cut(s) | 637 |
| BcoDI | GTCTC | 2 cut(s) | 316, 432 |
| BfaI | CTAG | 2 cut(s) | 600, 633 |
| BfmI | CTRYAG | 1 cut(s) | 494 |
| BfrI | CTTAAG | 1 cut(s) | 41 |
| BisI | GCNGC | 3 cut(s) | 127, 585, 588 |
| BlsI | GCNGC | 3 cut(s) | 128, 586, 589 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 3 cut(s) | 20, 350, 516 |
| BmsI | GCATC | 1 cut(s) | 220 |
| BpiI | GAAGAC | 1 cut(s) | 280 |
| BpuEI | CTTGAG | 1 cut(s) | 45 |
| BsaAI | YACGTR | 1 cut(s) | 528 |
| BsaWI | WCCGGW | 1 cut(s) | 445 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 523, 553 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 198, 334 |
| Bse118I | RCCGGY | 1 cut(s) | 445 |
| Bse3DI | GCAATG | 1 cut(s) | 541 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 198, 334 |
| BseMI | GCAATG | 1 cut(s) | 541 |
| BseRI | GAGGAG | 1 cut(s) | 195 |
| BseXI | GCAGC | 2 cut(s) | 596, 599 |
| Bsh1236I | CGCG | 1 cut(s) | 9 |
| BshFI | GGCC | 2 cut(s) | 191, 517 |
| BshNI | GGYRCC | 1 cut(s) | 348 |
| BshTI | ACCGGT | 1 cut(s) | 445 |
| BsiSI | CCGG | 1 cut(s) | 446 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 198, 334 |
| BsmAI | GTCTC | 2 cut(s) | 316, 432 |
| BsnI | GGCC | 2 cut(s) | 191, 517 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 3 cut(s) | 64, 405, 637 |
| BspACI | CCGC | 2 cut(s) | 9, 126 |
| BspANI | GGCC | 2 cut(s) | 191, 517 |
| BspFNI | CGCG | 1 cut(s) | 9 |
| BspLI | GGNNCC | 3 cut(s) | 20, 350, 516 |
| BspPI | GGATC | 1 cut(s) | 59 |
| BspT107I | GGYRCC | 1 cut(s) | 348 |
| BspTI | CTTAAG | 1 cut(s) | 41 |
| BsrDI | GCAATG | 1 cut(s) | 541 |
| BsrFI | RCCGGY | 1 cut(s) | 445 |
| BssAI | RCCGGY | 1 cut(s) | 445 |
| BssMI | GATC | 3 cut(s) | 64, 405, 637 |
| BssSI | CACGAG | 1 cut(s) | 608 |
| Bst2BI | CACGAG | 1 cut(s) | 608 |
| Bst4CI | ACNGT | 1 cut(s) | 544 |
| BstAFI | CTTAAG | 1 cut(s) | 41 |
| BstBAI | YACGTR | 1 cut(s) | 528 |
| BstC8I | GCNNGC | 2 cut(s) | 11, 592 |
| BstDEI | CTNAG | 1 cut(s) | 344 |
| BstFNI | CGCG | 1 cut(s) | 9 |
| BstHHI | GCGC | 2 cut(s) | 9, 165 |
| BstKTI | GATC | 3 cut(s) | 67, 408, 640 |
| BstMAI | GTCTC | 2 cut(s) | 316, 432 |
| BstMBI | GATC | 3 cut(s) | 64, 405, 637 |
| BstSFI | CTRYAG | 1 cut(s) | 494 |
| BstUI | CGCG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 2 cut(s) | 596, 599 |
| BstV2I | GAAGAC | 1 cut(s) | 280 |
| BstX2I | RGATCY | 1 cut(s) | 64 |
| BstYI | RGATCY | 1 cut(s) | 64 |
| BsuRI | GGCC | 2 cut(s) | 191, 517 |
| BtsI | GCAGTG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 2 cut(s) | 11, 592 |
| CfoI | GCGC | 2 cut(s) | 9, 165 |
| Cfr10I | RCCGGY | 1 cut(s) | 445 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| Csp6I | GTAC | 2 cut(s) | 139, 540 |
| CspAI | ACCGGT | 1 cut(s) | 445 |
| CviAII | CATG | 5 cut(s) | 333, 371, 378, 548, 619 |
| CviQI | GTAC | 2 cut(s) | 139, 540 |
| DdeI | CTNAG | 1 cut(s) | 344 |
| DpnI | GATC | 3 cut(s) | 66, 407, 639 |
| DpnII | GATC | 3 cut(s) | 64, 405, 637 |
| Eco24I | GRGCYC | 1 cut(s) | 61 |
| Eco72I | CACGTG | 1 cut(s) | 528 |
| EcoT38I | GRGCYC | 1 cut(s) | 61 |
| FaeI | CATG | 5 cut(s) | 336, 374, 381, 551, 622 |
| FaiI | YATR | 9 cut(s) | 83, 300, 334, 372, 379, 386, 508, 549, 620 |
| FatI | CATG | 5 cut(s) | 332, 370, 377, 547, 618 |
| FauI | CCCGC | 1 cut(s) | 2 |
| FbaI | TGATCA | 1 cut(s) | 637 |
| Fnu4HI | GCNGC | 3 cut(s) | 127, 585, 588 |
| FriOI | GRGCYC | 1 cut(s) | 61 |
| Fsp4HI | GCNGC | 3 cut(s) | 127, 585, 588 |
| FspBI | CTAG | 2 cut(s) | 600, 633 |
| GlaI | GCGC | 2 cut(s) | 8, 164 |
| GluI | GCNGC | 3 cut(s) | 127, 585, 588 |
| HaeIII | GGCC | 2 cut(s) | 191, 517 |
| HapII | CCGG | 1 cut(s) | 446 |
| HhaI | GCGC | 2 cut(s) | 9, 165 |
| Hin1II | CATG | 5 cut(s) | 336, 374, 381, 551, 622 |
| Hin6I | GCGC | 2 cut(s) | 7, 163 |
| HinP1I | GCGC | 2 cut(s) | 7, 163 |
| HpaII | CCGG | 1 cut(s) | 446 |
| Hpy166II | GTNNAC | 1 cut(s) | 27 |
| Hpy188I | TCNGA | 1 cut(s) | 392 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 68, 308 |
| Hpy8I | GTNNAC | 1 cut(s) | 27 |
| HpyAV | CCTTC | 2 cut(s) | 97, 196 |
| HpyCH4III | ACNGT | 1 cut(s) | 544 |
| HpyCH4IV | ACGT | 2 cut(s) | 216, 527 |
| HpyCH4V | TGCA | 3 cut(s) | 377, 506, 547 |
| HpyF3I | CTNAG | 1 cut(s) | 344 |
| HpySE526I | ACGT | 2 cut(s) | 216, 527 |
| Hsp92II | CATG | 5 cut(s) | 336, 374, 381, 551, 622 |
| HspAI | GCGC | 2 cut(s) | 7, 163 |
| Ksp22I | TGATCA | 1 cut(s) | 637 |
| Kzo9I | GATC | 3 cut(s) | 64, 405, 637 |
| LmnI | GCTCC | 2 cut(s) | 160, 531 |
| LpnPI | CCDG | 9 cut(s) | 153, 196, 263, 276, 321, 458, 459, 467, 482 |
| Lsp1109I | GCAGC | 2 cut(s) | 596, 599 |
| LweI | GCATC | 1 cut(s) | 220 |
| MaeI | CTAG | 2 cut(s) | 600, 633 |
| MaeII | ACGT | 2 cut(s) | 216, 527 |
| MaeIII | GTNAC | 1 cut(s) | 488 |
| MalI | GATC | 3 cut(s) | 66, 407, 639 |
| MboI | GATC | 3 cut(s) | 64, 405, 637 |
| MboII | GAAGA | 1 cut(s) | 285 |
| MflI | RGATCY | 1 cut(s) | 64 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MluCI | AATT | 2 cut(s) | 145, 225 |
| MmeI | TCCRAC | 2 cut(s) | 179, 537 |
| MnlI | CCTC | 5 cut(s) | 173, 176, 309, 378, 574 |
| MseI | TTAA | 6 cut(s) | 42, 53, 287, 399, 468, 480 |
| MslI | CAYNNNNRTG | 3 cut(s) | 251, 346, 526 |
| MspCI | CTTAAG | 1 cut(s) | 41 |
| MspI | CCGG | 1 cut(s) | 446 |
| MvnI | CGCG | 1 cut(s) | 9 |
| NdeII | GATC | 3 cut(s) | 64, 405, 637 |
| NlaIII | CATG | 5 cut(s) | 336, 374, 381, 551, 622 |
| NlaIV | GGNNCC | 3 cut(s) | 20, 350, 516 |
| OliI | CACNNNNGTG | 1 cut(s) | 346 |
| PinAI | ACCGGT | 1 cut(s) | 445 |
| PkrI | GCNGC | 3 cut(s) | 128, 586, 589 |
| PmaCI | CACGTG | 1 cut(s) | 528 |
| PmlI | CACGTG | 1 cut(s) | 528 |
| Ppu21I | YACGTR | 1 cut(s) | 528 |
| PshBI | ATTAAT | 1 cut(s) | 480 |
| PspCI | CACGTG | 1 cut(s) | 528 |
| PspN4I | GGNNCC | 3 cut(s) | 20, 350, 516 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| PsuI | RGATCY | 1 cut(s) | 64 |
| RsaI | GTAC | 2 cut(s) | 140, 541 |
| RsaNI | GTAC | 2 cut(s) | 139, 540 |
| RseI | CAYNNNNRTG | 3 cut(s) | 251, 346, 526 |
| SaqAI | TTAA | 6 cut(s) | 42, 53, 287, 399, 468, 480 |
| SatI | GCNGC | 3 cut(s) | 127, 585, 588 |
| Sau3AI | GATC | 3 cut(s) | 64, 405, 637 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SfaNI | GCATC | 1 cut(s) | 220 |
| SfcI | CTRYAG | 1 cut(s) | 494 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 251, 346, 526 |
| SmlI | CTYRAG | 2 cut(s) | 41, 60 |
| SmoI | CTYRAG | 2 cut(s) | 41, 60 |
| Sse9I | AATT | 2 cut(s) | 145, 225 |
| SsiI | CCGC | 2 cut(s) | 9, 126 |
| SspMI | CTAG | 2 cut(s) | 600, 633 |
| TaaI | ACNGT | 1 cut(s) | 544 |
| TaiI | ACGT | 2 cut(s) | 219, 530 |
| TasI | AATT | 2 cut(s) | 145, 225 |
| TauI | GCSGC | 1 cut(s) | 129 |
| Tru1I | TTAA | 6 cut(s) | 42, 53, 287, 399, 468, 480 |
| Tru9I | TTAA | 6 cut(s) | 42, 53, 287, 399, 468, 480 |
| TscAI | CASTG | 1 cut(s) | 114 |
| TseI | GCWGC | 2 cut(s) | 584, 587 |
| TspDTI | ATGAA | 5 cut(s) | 70, 235, 321, 564, 587 |
| TspRI | CASTG | 1 cut(s) | 114 |
| Vha464I | CTTAAG | 1 cut(s) | 41 |
| VspI | ATTAAT | 1 cut(s) | 480 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 525 |
| XspI | CTAG | 2 cut(s) | 600, 633 |