ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 100 | 4.6e-11 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 115, 347 |
| AciI | CCGC | 2 cut(s) | 25, 41 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AcyI | GRCGYC | 1 cut(s) | 84 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 343, 375 |
| AluBI | AGCT | 2 cut(s) | 56, 331 |
| AluI | AGCT | 2 cut(s) | 56, 331 |
| Alw21I | GWGCWC | 1 cut(s) | 58 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 362 |
| AoxI | GGCC | 1 cut(s) | 253 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| AspLEI | GCGC | 1 cut(s) | 79 |
| AspS9I | GGNCC | 1 cut(s) | 253 |
| AsuC2I | CCSGG | 1 cut(s) | 320 |
| BanII | GRGCYC | 1 cut(s) | 58 |
| Bbv12I | GWGCWC | 1 cut(s) | 58 |
| BccI | CCATC | 1 cut(s) | 97 |
| BcnI | CCSGG | 1 cut(s) | 320 |
| BfuAI | ACCTGC | 2 cut(s) | 115, 347 |
| Bme1390I | CCNGG | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 1 cut(s) | 253 |
| BmiI | GGNNCC | 1 cut(s) | 38 |
| BmrFI | CCNGG | 1 cut(s) | 320 |
| BmsI | GCATC | 1 cut(s) | 253 |
| BpuMI | CCSGG | 1 cut(s) | 320 |
| BsaHI | GRCGYC | 1 cut(s) | 84 |
| BsaWI | WCCGGW | 1 cut(s) | 302 |
| Bse3DI | GCAATG | 1 cut(s) | 210 |
| BseGI | GGATG | 1 cut(s) | 286 |
| BseMI | GCAATG | 1 cut(s) | 210 |
| BseYI | CCCAGC | 1 cut(s) | 327 |
| BshFI | GGCC | 1 cut(s) | 255 |
| BsiHKAI | GWGCWC | 1 cut(s) | 58 |
| BsiSI | CCGG | 2 cut(s) | 303, 320 |
| BsnI | GGCC | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| BspACI | CCGC | 2 cut(s) | 25, 41 |
| BspANI | GGCC | 1 cut(s) | 255 |
| BspLI | GGNNCC | 1 cut(s) | 38 |
| BspMI | ACCTGC | 2 cut(s) | 115, 347 |
| BsrDI | GCAATG | 1 cut(s) | 210 |
| BssNI | GRCGYC | 1 cut(s) | 84 |
| BstACI | GRCGYC | 1 cut(s) | 84 |
| BstEII | GGTNACC | 1 cut(s) | 314 |
| BstF5I | GGATG | 1 cut(s) | 286 |
| BstHHI | GCGC | 1 cut(s) | 79 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 83 |
| BstPI | GGTNACC | 1 cut(s) | 314 |
| BstSCI | CCNGG | 1 cut(s) | 318 |
| BsuRI | GGCC | 1 cut(s) | 255 |
| BtsCI | GGATG | 1 cut(s) | 286 |
| BveI | ACCTGC | 2 cut(s) | 115, 347 |
| CaiI | CAGNNNCTG | 1 cut(s) | 362 |
| CfoI | GCGC | 1 cut(s) | 79 |
| Cfr13I | GGNCC | 1 cut(s) | 253 |
| CseI | GACGC | 1 cut(s) | 92 |
| CviAII | CATG | 1 cut(s) | 15 |
| CviJI | RGCY | 5 cut(s) | 56, 243, 255, 298, 331 |
| CviKI_1 | RGCY | 5 cut(s) | 56, 243, 255, 298, 331 |
| Ecl136II | GAGCTC | 1 cut(s) | 56 |
| Eco24I | GRGCYC | 1 cut(s) | 58 |
| Eco53kI | GAGCTC | 1 cut(s) | 56 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| Eco91I | GGTNACC | 1 cut(s) | 314 |
| EcoICRI | GAGCTC | 1 cut(s) | 56 |
| EcoO65I | GGTNACC | 1 cut(s) | 314 |
| EcoT38I | GRGCYC | 1 cut(s) | 58 |
| FaeI | CATG | 1 cut(s) | 18 |
| FaiI | YATR | 6 cut(s) | 16, 134, 141, 224, 258, 312 |
| FatI | CATG | 1 cut(s) | 14 |
| FauI | CCCGC | 2 cut(s) | 18, 48 |
| FokI | GGATG | 1 cut(s) | 293 |
| FriOI | GRGCYC | 1 cut(s) | 58 |
| GlaI | GCGC | 1 cut(s) | 78 |
| GsaI | CCCAGC | 1 cut(s) | 331 |
| HaeIII | GGCC | 1 cut(s) | 255 |
| HapII | CCGG | 2 cut(s) | 303, 320 |
| HgaI | GACGC | 1 cut(s) | 92 |
| HhaI | GCGC | 1 cut(s) | 79 |
| Hin1I | GRCGYC | 1 cut(s) | 84 |
| Hin1II | CATG | 1 cut(s) | 18 |
| Hin6I | GCGC | 1 cut(s) | 77 |
| HinP1I | GCGC | 1 cut(s) | 77 |
| HinfI | GANTC | 2 cut(s) | 270, 306 |
| HpaII | CCGG | 2 cut(s) | 303, 320 |
| Hpy188I | TCNGA | 5 cut(s) | 53, 60, 74, 173, 351 |
| Hpy188III | TCNNGA | 1 cut(s) | 100 |
| Hpy99I | CGWCG | 1 cut(s) | 351 |
| HpyAV | CCTTC | 1 cut(s) | 278 |
| HpyCH4V | TGCA | 2 cut(s) | 266, 356 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 83 |
| Hsp92I | GRCGYC | 1 cut(s) | 84 |
| Hsp92II | CATG | 1 cut(s) | 18 |
| HspAI | GCGC | 1 cut(s) | 77 |
| LpnPI | CCDG | 7 cut(s) | 110, 196, 252, 316, 333, 341, 342 |
| LweI | GCATC | 1 cut(s) | 253 |
| MaeIII | GTNAC | 1 cut(s) | 314 |
| MboII | GAAGA | 2 cut(s) | 73, 226 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MluCI | AATT | 1 cut(s) | 338 |
| MlyI | GAGTC | 1 cut(s) | 279 |
| MmeI | TCCRAC | 1 cut(s) | 329 |
| MnlI | CCTC | 1 cut(s) | 185 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MseI | TTAA | 2 cut(s) | 68, 366 |
| MslI | CAYNNNNRTG | 1 cut(s) | 261 |
| MspI | CCGG | 2 cut(s) | 303, 320 |
| MspR9I | CCNGG | 1 cut(s) | 320 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 83 |
| NciI | CCSGG | 1 cut(s) | 320 |
| NlaIII | CATG | 1 cut(s) | 18 |
| NlaIV | GGNNCC | 1 cut(s) | 38 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 1 cut(s) | 306 |
| PleI | GAGTC | 1 cut(s) | 278 |
| PpsI | GAGTC | 1 cut(s) | 278 |
| Psp124BI | GAGCTC | 1 cut(s) | 58 |
| PspEI | GGTNACC | 1 cut(s) | 314 |
| PspFI | CCCAGC | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 1 cut(s) | 38 |
| PspPI | GGNCC | 1 cut(s) | 253 |
| PstNI | CAGNNNCTG | 1 cut(s) | 362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 261 |
| SacI | GAGCTC | 1 cut(s) | 58 |
| SaqAI | TTAA | 2 cut(s) | 68, 366 |
| Sau96I | GGNCC | 1 cut(s) | 253 |
| SchI | GAGTC | 1 cut(s) | 279 |
| ScrFI | CCNGG | 1 cut(s) | 320 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SetI | ASST | 5 cut(s) | 10, 58, 129, 333, 361 |
| SfaNI | GCATC | 1 cut(s) | 253 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 261 |
| Sse9I | AATT | 1 cut(s) | 338 |
| SsiI | CCGC | 2 cut(s) | 25, 41 |
| SstI | GAGCTC | 1 cut(s) | 58 |
| StyD4I | CCNGG | 1 cut(s) | 318 |
| TasI | AATT | 1 cut(s) | 338 |
| TfiI | GAWTC | 1 cut(s) | 306 |
| Tru1I | TTAA | 2 cut(s) | 68, 366 |
| Tru9I | TTAA | 2 cut(s) | 68, 366 |
| TspDTI | ATGAA | 1 cut(s) | 297 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |