ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 450 |
| Acc36I | ACCTGC | 1 cut(s) | 331 |
| AccIII | TCCGGA | 1 cut(s) | 211 |
| AclWI | GGATC | 1 cut(s) | 591 |
| AcyI | GRCGYC | 1 cut(s) | 447 |
| AfaI | GTAC | 2 cut(s) | 489, 564 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 96, 323 |
| AgsI | TTSAA | 2 cut(s) | 203, 434 |
| AjnI | CCWGG | 1 cut(s) | 71 |
| AluBI | AGCT | 3 cut(s) | 221, 427, 614 |
| AluI | AGCT | 3 cut(s) | 221, 427, 614 |
| Alw26I | GTCTC | 3 cut(s) | 213, 515, 541 |
| AlwI | GGATC | 1 cut(s) | 591 |
| Ama87I | CYCGRG | 1 cut(s) | 391 |
| Aor13HI | TCCGGA | 1 cut(s) | 211 |
| AoxI | GGCC | 1 cut(s) | 58 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 35, 67 |
| AspA2I | CCTAGG | 1 cut(s) | 62 |
| AspS9I | GGNCC | 1 cut(s) | 59 |
| AsuC2I | CCSGG | 1 cut(s) | 474 |
| AsuHPI | GGTGA | 1 cut(s) | 698 |
| AsuII | TTCGAA | 1 cut(s) | 226 |
| AvaI | CYCGRG | 1 cut(s) | 391 |
| AvrII | CCTAGG | 1 cut(s) | 62 |
| BanII | GRGCYC | 1 cut(s) | 474 |
| BccI | CCATC | 1 cut(s) | 572 |
| BceAI | ACGGC | 1 cut(s) | 113 |
| BciT130I | CCWGG | 1 cut(s) | 73 |
| BclI | TGATCA | 2 cut(s) | 181, 679 |
| BcnI | CCSGG | 1 cut(s) | 474 |
| BcoDI | GTCTC | 3 cut(s) | 213, 515, 541 |
| BfaI | CTAG | 3 cut(s) | 63, 150, 558 |
| BfmI | CTRYAG | 2 cut(s) | 321, 500 |
| BfuAI | ACCTGC | 1 cut(s) | 331 |
| BglII | AGATCT | 1 cut(s) | 554 |
| BlnI | CCTAGG | 1 cut(s) | 62 |
| Bme1390I | CCNGG | 2 cut(s) | 73, 474 |
| BmeT110I | CYCGRG | 1 cut(s) | 391 |
| BmgT120I | GGNCC | 1 cut(s) | 59 |
| BmiI | GGNNCC | 1 cut(s) | 330 |
| BmrFI | CCNGG | 2 cut(s) | 73, 474 |
| BmsI | GCATC | 4 cut(s) | 143, 165, 300, 327 |
| Bpu14I | TTCGAA | 1 cut(s) | 226 |
| BpuEI | CTTGAG | 1 cut(s) | 557 |
| BpuMI | CCSGG | 1 cut(s) | 474 |
| BsaBI | GATNNNNATC | 1 cut(s) | 582 |
| BsaHI | GRCGYC | 1 cut(s) | 447 |
| BsaJI | CCNNGG | 2 cut(s) | 62, 90 |
| BsaWI | WCCGGW | 1 cut(s) | 211 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 251, 281 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 96, 323 |
| Bse3DI | GCAATG | 1 cut(s) | 131 |
| Bse8I | GATNNNNATC | 1 cut(s) | 582 |
| BseAI | TCCGGA | 1 cut(s) | 211 |
| BseBI | CCWGG | 1 cut(s) | 73 |
| BseDI | CCNNGG | 2 cut(s) | 62, 90 |
| BseGI | GGATG | 2 cut(s) | 315, 583 |
| BseJI | GATNNNNATC | 1 cut(s) | 582 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 96, 323 |
| BseMI | GCAATG | 1 cut(s) | 131 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BshFI | GGCC | 1 cut(s) | 60 |
| BsiHKCI | CYCGRG | 1 cut(s) | 391 |
| BsiSI | CCGG | 2 cut(s) | 212, 474 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 96, 323 |
| BsmAI | GTCTC | 3 cut(s) | 213, 515, 541 |
| BsmBI | CGTCTC | 1 cut(s) | 515 |
| BsnI | GGCC | 1 cut(s) | 60 |
| BsoBI | CYCGRG | 1 cut(s) | 391 |
| Bsp119I | TTCGAA | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 1 cut(s) | 474 |
| Bsp13I | TCCGGA | 1 cut(s) | 211 |
| Bsp1407I | TGTACA | 1 cut(s) | 487 |
| Bsp143I | GATC | 5 cut(s) | 103, 181, 554, 583, 679 |
| BspANI | GGCC | 1 cut(s) | 60 |
| BspEI | TCCGGA | 1 cut(s) | 211 |
| BspHI | TCATGA | 1 cut(s) | 694 |
| BspLI | GGNNCC | 1 cut(s) | 330 |
| BspMI | ACCTGC | 1 cut(s) | 331 |
| BspPI | GGATC | 1 cut(s) | 591 |
| BspT104I | TTCGAA | 1 cut(s) | 226 |
| BsrDI | GCAATG | 1 cut(s) | 131 |
| BsrGI | TGTACA | 1 cut(s) | 487 |
| BssECI | CCNNGG | 2 cut(s) | 62, 90 |
| BssMI | GATC | 5 cut(s) | 103, 181, 554, 583, 679 |
| BssNI | GRCGYC | 1 cut(s) | 447 |
| BssT1I | CCWWGG | 2 cut(s) | 62, 90 |
| Bst2UI | CCWGG | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 3 cut(s) | 284, 504, 676 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstACI | GRCGYC | 1 cut(s) | 447 |
| BstAUI | TGTACA | 1 cut(s) | 487 |
| BstBI | TTCGAA | 1 cut(s) | 226 |
| BstC8I | GCNNGC | 2 cut(s) | 386, 612 |
| BstF5I | GGATG | 2 cut(s) | 315, 583 |
| BstKTI | GATC | 5 cut(s) | 106, 184, 557, 586, 682 |
| BstMAI | GTCTC | 3 cut(s) | 213, 515, 541 |
| BstMBI | GATC | 5 cut(s) | 103, 181, 554, 583, 679 |
| BstNI | CCWGG | 1 cut(s) | 73 |
| BstSCI | CCNGG | 2 cut(s) | 71, 472 |
| BstSFI | CTRYAG | 2 cut(s) | 321, 500 |
| BstX2I | RGATCY | 1 cut(s) | 554 |
| BstYI | RGATCY | 1 cut(s) | 554 |
| BsuRI | GGCC | 1 cut(s) | 60 |
| BtsCI | GGATG | 2 cut(s) | 315, 583 |
| BtsI | GCAGTG | 2 cut(s) | 184, 674 |
| BtsIMutI | CAGTG | 2 cut(s) | 184, 674 |
| BveI | ACCTGC | 1 cut(s) | 331 |
| Cac8I | GCNNGC | 2 cut(s) | 386, 612 |
| CciI | TCATGA | 1 cut(s) | 694 |
| Cfr13I | GGNCC | 1 cut(s) | 59 |
| CsiI | ACCWGGT | 1 cut(s) | 71 |
| Csp6I | GTAC | 2 cut(s) | 488, 563 |
| CviAII | CATG | 2 cut(s) | 46, 695 |
| CviQI | GTAC | 2 cut(s) | 488, 563 |
| DpnI | GATC | 5 cut(s) | 105, 183, 556, 585, 681 |
| DpnII | GATC | 5 cut(s) | 103, 181, 554, 583, 679 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Eco130I | CCWWGG | 2 cut(s) | 62, 90 |
| Eco24I | GRGCYC | 1 cut(s) | 474 |
| Eco88I | CYCGRG | 1 cut(s) | 391 |
| EcoRII | CCWGG | 1 cut(s) | 71 |
| EcoT14I | CCWWGG | 2 cut(s) | 62, 90 |
| EcoT22I | ATGCAT | 1 cut(s) | 158 |
| EcoT38I | GRGCYC | 1 cut(s) | 474 |
| ErhI | CCWWGG | 2 cut(s) | 62, 90 |
| Esp3I | CGTCTC | 1 cut(s) | 515 |
| FaeI | CATG | 2 cut(s) | 49, 698 |
| FaiI | YATR | 9 cut(s) | 33, 47, 122, 276, 278, 323, 593, 606, 696 |
| FatI | CATG | 2 cut(s) | 45, 694 |
| FauNDI | CATATG | 1 cut(s) | 276 |
| FbaI | TGATCA | 2 cut(s) | 181, 679 |
| FokI | GGATG | 2 cut(s) | 322, 590 |
| FriOI | GRGCYC | 1 cut(s) | 474 |
| FspBI | CTAG | 3 cut(s) | 63, 150, 558 |
| HaeIII | GGCC | 1 cut(s) | 60 |
| HapII | CCGG | 2 cut(s) | 212, 474 |
| Hin1I | GRCGYC | 1 cut(s) | 447 |
| Hin1II | CATG | 2 cut(s) | 49, 698 |
| HincII | GTYRAC | 1 cut(s) | 371 |
| HindII | GTYRAC | 1 cut(s) | 371 |
| HinfI | GANTC | 3 cut(s) | 9, 215, 430 |
| HpaII | CCGG | 2 cut(s) | 212, 474 |
| HphI | GGTGA | 1 cut(s) | 698 |
| Hpy166II | GTNNAC | 6 cut(s) | 28, 69, 87, 371, 650, 672 |
| Hpy188I | TCNGA | 2 cut(s) | 117, 181 |
| Hpy188III | TCNNGA | 5 cut(s) | 150, 212, 451, 558, 695 |
| Hpy8I | GTNNAC | 6 cut(s) | 28, 69, 87, 371, 650, 672 |
| HpyAV | CCTTC | 1 cut(s) | 618 |
| HpyCH4III | ACNGT | 3 cut(s) | 284, 504, 676 |
| HpyCH4IV | ACGT | 1 cut(s) | 447 |
| HpyCH4V | TGCA | 3 cut(s) | 124, 156, 340 |
| HpySE526I | ACGT | 1 cut(s) | 447 |
| Hsp92I | GRCGYC | 1 cut(s) | 447 |
| Hsp92II | CATG | 2 cut(s) | 49, 698 |
| Kpn2I | TCCGGA | 1 cut(s) | 211 |
| Ksp22I | TGATCA | 2 cut(s) | 181, 679 |
| Kzo9I | GATC | 5 cut(s) | 103, 181, 554, 583, 679 |
| LpnPI | CCDG | 9 cut(s) | 58, 85, 124, 225, 326, 351, 370, 487, 623 |
| LweI | GCATC | 4 cut(s) | 143, 165, 300, 327 |
| MabI | ACCWGGT | 1 cut(s) | 71 |
| MaeI | CTAG | 3 cut(s) | 63, 150, 558 |
| MaeII | ACGT | 1 cut(s) | 447 |
| MaeIII | GTNAC | 4 cut(s) | 36, 267, 378, 699 |
| MalI | GATC | 5 cut(s) | 105, 183, 556, 585, 681 |
| MboI | GATC | 5 cut(s) | 103, 181, 554, 583, 679 |
| MboII | GAAGA | 2 cut(s) | 185, 592 |
| MflI | RGATCY | 1 cut(s) | 554 |
| MhlI | GDGCHC | 1 cut(s) | 474 |
| MluCI | AATT | 1 cut(s) | 440 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MmeI | TCCRAC | 2 cut(s) | 341, 427 |
| MnlI | CCTC | 3 cut(s) | 177, 201, 250 |
| Mph1103I | ATGCAT | 1 cut(s) | 158 |
| MroI | TCCGGA | 1 cut(s) | 211 |
| MseI | TTAA | 3 cut(s) | 531, 654, 715 |
| MslI | CAYNNNNRTG | 2 cut(s) | 203, 483 |
| MspA1I | CMGCKG | 1 cut(s) | 221 |
| MspI | CCGG | 2 cut(s) | 212, 474 |
| MspR9I | CCNGG | 2 cut(s) | 73, 474 |
| MvaI | CCWGG | 1 cut(s) | 73 |
| NciI | CCSGG | 1 cut(s) | 474 |
| NdeI | CATATG | 1 cut(s) | 276 |
| NdeII | GATC | 5 cut(s) | 103, 181, 554, 583, 679 |
| NlaIII | CATG | 2 cut(s) | 49, 698 |
| NlaIV | GGNNCC | 1 cut(s) | 330 |
| NsiI | ATGCAT | 1 cut(s) | 158 |
| NspV | TTCGAA | 1 cut(s) | 226 |
| PagI | TCATGA | 1 cut(s) | 694 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 103 |
| PfeI | GAWTC | 2 cut(s) | 9, 430 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| Psp6I | CCWGG | 1 cut(s) | 71 |
| PspGI | CCWGG | 1 cut(s) | 71 |
| PspN4I | GGNNCC | 1 cut(s) | 330 |
| PspPI | GGNCC | 1 cut(s) | 59 |
| PsuI | RGATCY | 1 cut(s) | 554 |
| PvuII | CAGCTG | 1 cut(s) | 221 |
| RsaI | GTAC | 2 cut(s) | 489, 564 |
| RsaNI | GTAC | 2 cut(s) | 488, 563 |
| RseI | CAYNNNNRTG | 2 cut(s) | 203, 483 |
| SaqAI | TTAA | 3 cut(s) | 531, 654, 715 |
| Sau3AI | GATC | 5 cut(s) | 103, 181, 554, 583, 679 |
| Sau96I | GGNCC | 1 cut(s) | 59 |
| SchI | GAGTC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 2 cut(s) | 73, 474 |
| SduI | GDGCHC | 1 cut(s) | 474 |
| SexAI | ACCWGGT | 1 cut(s) | 71 |
| SfaNI | GCATC | 4 cut(s) | 143, 165, 300, 327 |
| SfcI | CTRYAG | 2 cut(s) | 321, 500 |
| SfuI | TTCGAA | 1 cut(s) | 226 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 203, 483 |
| SmlI | CTYRAG | 1 cut(s) | 572 |
| SmoI | CTYRAG | 1 cut(s) | 572 |
| Sse9I | AATT | 1 cut(s) | 440 |
| SspMI | CTAG | 3 cut(s) | 63, 150, 558 |
| StyD4I | CCNGG | 2 cut(s) | 71, 472 |
| StyI | CCWWGG | 2 cut(s) | 62, 90 |
| TaaI | ACNGT | 3 cut(s) | 284, 504, 676 |
| TaiI | ACGT | 1 cut(s) | 450 |
| TaqI | TCGA | 4 cut(s) | 7, 106, 226, 468 |
| TasI | AATT | 1 cut(s) | 440 |
| TatI | WGTACW | 2 cut(s) | 487, 562 |
| TfiI | GAWTC | 2 cut(s) | 9, 430 |
| Tru1I | TTAA | 3 cut(s) | 531, 654, 715 |
| Tru9I | TTAA | 3 cut(s) | 531, 654, 715 |
| TscAI | CASTG | 2 cut(s) | 191, 674 |
| TspDTI | ATGAA | 5 cut(s) | 437, 470, 531, 549, 683 |
| TspGWI | ACGGA | 1 cut(s) | 431 |
| TspRI | CASTG | 2 cut(s) | 191, 674 |
| XbaI | TCTAGA | 2 cut(s) | 149, 557 |
| XmaJI | CCTAGG | 1 cut(s) | 62 |
| XspI | CTAG | 3 cut(s) | 63, 150, 558 |
| ZraI | GACGTC | 1 cut(s) | 448 |
| Zsp2I | ATGCAT | 1 cut(s) | 158 |