Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 365 - 477 | 5.7e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 32 |
| Acc36I | ACCTGC | 1 cut(s) | 824 |
| Acc65I | GGTACC | 2 cut(s) | 1165, 1307 |
| AccB1I | GGYRCC | 2 cut(s) | 1165, 1307 |
| AccI | GTMKAC | 2 cut(s) | 817, 1330 |
| AciI | CCGC | 1 cut(s) | 496 |
| AclWI | GGATC | 4 cut(s) | 318, 886, 899, 1031 |
| AcsI | RAATTY | 4 cut(s) | 78, 368, 564, 597 |
| AcuI | CTGAAG | 1 cut(s) | 104 |
| AfaI | GTAC | 7 cut(s) | 96, 143, 318, 1167, 1309, 1387, 1497 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 197, 760 |
| AflIII | ACRYGT | 1 cut(s) | 675 |
| AgeI | ACCGGT | 2 cut(s) | 820, 1162 |
| AgsI | TTSAA | 5 cut(s) | 12, 77, 163, 899, 1029 |
| AjnI | CCWGG | 4 cut(s) | 542, 754, 922, 1081 |
| AleI | CACNNNNGTG | 1 cut(s) | 1506 |
| AluBI | AGCT | 7 cut(s) | 212, 217, 437, 585, 650, 1350, 1424 |
| AluI | AGCT | 7 cut(s) | 212, 217, 437, 585, 650, 1350, 1424 |
| Alw21I | GWGCWC | 2 cut(s) | 327, 537 |
| Alw26I | GTCTC | 1 cut(s) | 435 |
| AlwI | GGATC | 4 cut(s) | 318, 886, 899, 1031 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1181 |
| Ama87I | CYCGRG | 1 cut(s) | 432 |
| AoxI | GGCC | 2 cut(s) | 520, 1318 |
| ApeKI | GCWGC | 4 cut(s) | 767, 861, 1358, 1424 |
| ApoI | RAATTY | 4 cut(s) | 78, 368, 564, 597 |
| AseI | ATTAAT | 1 cut(s) | 641 |
| AsiGI | ACCGGT | 2 cut(s) | 820, 1162 |
| Asp718I | GGTACC | 2 cut(s) | 1165, 1307 |
| AspS9I | GGNCC | 2 cut(s) | 520, 758 |
| AsuHPI | GGTGA | 4 cut(s) | 467, 710, 1046, 1434 |
| AvaI | CYCGRG | 1 cut(s) | 432 |
| AvaII | GGWCC | 1 cut(s) | 758 |
| BamHI | GGATCC | 1 cut(s) | 891 |
| BanI | GGYRCC | 2 cut(s) | 1165, 1307 |
| Bbv12I | GWGCWC | 2 cut(s) | 327, 537 |
| BbvI | GCAGC | 4 cut(s) | 754, 873, 1370, 1411 |
| BccI | CCATC | 3 cut(s) | 793, 1214, 1473 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 413, 447, 850, 884 |
| BciT130I | CCWGG | 4 cut(s) | 544, 756, 924, 1083 |
| BclI | TGATCA | 1 cut(s) | 130 |
| BcoDI | GTCTC | 1 cut(s) | 435 |
| BfaI | CTAG | 1 cut(s) | 1322 |
| BfmI | CTRYAG | 3 cut(s) | 385, 1270, 1431 |
| BfuAI | ACCTGC | 1 cut(s) | 824 |
| BisI | GCNGC | 4 cut(s) | 768, 862, 1359, 1425 |
| BlpI | GCTNAGC | 1 cut(s) | 213 |
| BlsI | GCNGC | 4 cut(s) | 769, 863, 1360, 1426 |
| Bme1390I | CCNGG | 4 cut(s) | 544, 756, 924, 1083 |
| Bme18I | GGWCC | 1 cut(s) | 758 |
| BmeT110I | CYCGRG | 1 cut(s) | 432 |
| BmgT120I | GGNCC | 2 cut(s) | 520, 758 |
| BmiI | GGNNCC | 6 cut(s) | 263, 541, 893, 1167, 1309, 1463 |
| BmrFI | CCNGG | 4 cut(s) | 544, 756, 924, 1083 |
| BmrI | ACTGGG | 1 cut(s) | 900 |
| BmsI | GCATC | 6 cut(s) | 497, 616, 726, 754, 1187, 1459 |
| BmuI | ACTGGG | 1 cut(s) | 900 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 289, 321 |
| BpmI | CTGGAG | 1 cut(s) | 639 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1446 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 213 |
| BpuEI | CTTGAG | 1 cut(s) | 387 |
| Bsa29I | ATCGAT | 1 cut(s) | 870 |
| BsaI | GGTCTC | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 1 cut(s) | 754 |
| BsaWI | WCCGGW | 4 cut(s) | 556, 760, 820, 1162 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 94, 124 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 197, 760 |
| Bse118I | RCCGGY | 2 cut(s) | 820, 1162 |
| Bse1I | ACTGG | 6 cut(s) | 143, 255, 656, 705, 906, 1321 |
| Bse3DI | GCAATG | 3 cut(s) | 208, 1361, 1408 |
| BseBI | CCWGG | 4 cut(s) | 544, 756, 924, 1083 |
| BseCI | ATCGAT | 1 cut(s) | 870 |
| BseDI | CCNNGG | 1 cut(s) | 754 |
| BseGI | GGATG | 3 cut(s) | 631, 769, 1483 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 197, 760 |
| BseMI | GCAATG | 3 cut(s) | 208, 1361, 1408 |
| BseMII | CTCAG | 4 cut(s) | 227, 320, 1112, 1437 |
| BseNI | ACTGG | 6 cut(s) | 143, 255, 656, 705, 906, 1321 |
| BseXI | GCAGC | 4 cut(s) | 754, 873, 1370, 1411 |
| BseYI | CCCAGC | 1 cut(s) | 217 |
| BsgI | GTGCAG | 2 cut(s) | 359, 753 |
| BshFI | GGCC | 2 cut(s) | 522, 1320 |
| BshNI | GGYRCC | 2 cut(s) | 1165, 1307 |
| BshTI | ACCGGT | 2 cut(s) | 820, 1162 |
| BshVI | ATCGAT | 1 cut(s) | 870 |
| BsiHKAI | GWGCWC | 2 cut(s) | 327, 537 |
| BsiHKCI | CYCGRG | 1 cut(s) | 432 |
| BsiSI | CCGG | 4 cut(s) | 557, 761, 821, 1163 |
| BslFI | GGGAC | 1 cut(s) | 888 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 197, 760 |
| BsmAI | GTCTC | 1 cut(s) | 435 |
| BsmFI | GGGAC | 1 cut(s) | 888 |
| BsmI | GAATGC | 1 cut(s) | 1139 |
| BsnI | GGCC | 2 cut(s) | 522, 1320 |
| Bso31I | GGTCTC | 1 cut(s) | 435 |
| BsoBI | CYCGRG | 1 cut(s) | 432 |
| Bsp1286I | GDGCHC | 2 cut(s) | 327, 537 |
| Bsp143I | GATC | 5 cut(s) | 130, 310, 891, 1036, 1221 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 213 |
| BspACI | CCGC | 1 cut(s) | 496 |
| BspANI | GGCC | 2 cut(s) | 522, 1320 |
| BspCNI | CTCAG | 4 cut(s) | 226, 319, 1111, 1438 |
| BspDI | ATCGAT | 1 cut(s) | 870 |
| BspLI | GGNNCC | 6 cut(s) | 263, 541, 893, 1167, 1309, 1463 |
| BspMAI | CTGCAG | 1 cut(s) | 1435 |
| BspMI | ACCTGC | 1 cut(s) | 824 |
| BspPI | GGATC | 4 cut(s) | 318, 886, 899, 1031 |
| BspT107I | GGYRCC | 2 cut(s) | 1165, 1307 |
| BspTNI | GGTCTC | 1 cut(s) | 435 |
| BsrDI | GCAATG | 3 cut(s) | 208, 1361, 1408 |
| BsrFI | RCCGGY | 2 cut(s) | 820, 1162 |
| BsrI | ACTGG | 6 cut(s) | 143, 255, 656, 705, 906, 1321 |
| BssAI | RCCGGY | 2 cut(s) | 820, 1162 |
| BssECI | CCNNGG | 1 cut(s) | 754 |
| BssMI | GATC | 5 cut(s) | 130, 310, 891, 1036, 1221 |
| Bst2UI | CCWGG | 4 cut(s) | 544, 756, 924, 1083 |
| Bst4CI | ACNGT | 4 cut(s) | 158, 967, 1200, 1271 |
| Bst6I | CTCTTC | 1 cut(s) | 72 |
| BstC8I | GCNNGC | 1 cut(s) | 1288 |
| BstDEI | CTNAG | 5 cut(s) | 213, 306, 773, 1098, 1446 |
| BstF5I | GGATG | 3 cut(s) | 631, 769, 1483 |
| BstKTI | GATC | 5 cut(s) | 133, 313, 894, 1039, 1224 |
| BstMAI | GTCTC | 1 cut(s) | 435 |
| BstMBI | GATC | 5 cut(s) | 130, 310, 891, 1036, 1221 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 242, 1430 |
| BstNI | CCWGG | 4 cut(s) | 544, 756, 924, 1083 |
| BstNSI | RCATGY | 2 cut(s) | 679, 1290 |
| BstSCI | CCNGG | 4 cut(s) | 542, 754, 922, 1081 |
| BstSFI | CTRYAG | 3 cut(s) | 385, 1270, 1431 |
| BstV1I | GCAGC | 4 cut(s) | 754, 873, 1370, 1411 |
| BstX2I | RGATCY | 1 cut(s) | 891 |
| BstYI | RGATCY | 1 cut(s) | 891 |
| Bsu15I | ATCGAT | 1 cut(s) | 870 |
| BsuRI | GGCC | 2 cut(s) | 522, 1320 |
| BsuTUI | ATCGAT | 1 cut(s) | 870 |
| BtsCI | GGATG | 3 cut(s) | 631, 769, 1483 |
| BtsI | GCAGTG | 1 cut(s) | 58 |
| BtsIMutI | CAGTG | 4 cut(s) | 58, 663, 712, 913 |
| BveI | ACCTGC | 1 cut(s) | 824 |
| Cac8I | GCNNGC | 1 cut(s) | 1288 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1181 |
| Cfr10I | RCCGGY | 2 cut(s) | 820, 1162 |
| Cfr13I | GGNCC | 2 cut(s) | 520, 758 |
| ClaI | ATCGAT | 1 cut(s) | 870 |
| CsiI | ACCWGGT | 1 cut(s) | 1081 |
| Csp6I | GTAC | 7 cut(s) | 95, 142, 317, 1166, 1308, 1386, 1496 |
| CspAI | ACCGGT | 2 cut(s) | 820, 1162 |
| CviQI | GTAC | 7 cut(s) | 95, 142, 317, 1166, 1308, 1386, 1496 |
| DdeI | CTNAG | 5 cut(s) | 213, 306, 773, 1098, 1446 |
| DpnI | GATC | 5 cut(s) | 132, 312, 893, 1038, 1223 |
| DpnII | GATC | 5 cut(s) | 130, 310, 891, 1036, 1221 |
| DraI | TTTAAA | 1 cut(s) | 1485 |
| Eam1104I | CTCTTC | 1 cut(s) | 72 |
| EarI | CTCTTC | 1 cut(s) | 72 |
| Eco31I | GGTCTC | 1 cut(s) | 435 |
| Eco32I | GATATC | 1 cut(s) | 1342 |
| Eco47I | GGWCC | 1 cut(s) | 758 |
| Eco57I | CTGAAG | 1 cut(s) | 104 |
| Eco88I | CYCGRG | 1 cut(s) | 432 |
| EcoO109I | RGGNCCY | 1 cut(s) | 520 |
| EcoRII | CCWGG | 4 cut(s) | 542, 754, 922, 1081 |
| EcoRV | GATATC | 1 cut(s) | 1342 |
| EcoT22I | ATGCAT | 3 cut(s) | 208, 1292, 1305 |
| FaqI | GGGAC | 1 cut(s) | 888 |
| FbaI | TGATCA | 1 cut(s) | 130 |
| FblI | GTMKAC | 2 cut(s) | 817, 1330 |
| Fnu4HI | GCNGC | 4 cut(s) | 768, 862, 1359, 1425 |
| FokI | GGATG | 3 cut(s) | 638, 776, 1490 |
| Fsp4HI | GCNGC | 4 cut(s) | 768, 862, 1359, 1425 |
| FspBI | CTAG | 1 cut(s) | 1322 |
| GluI | GCNGC | 4 cut(s) | 768, 862, 1359, 1425 |
| GsaI | CCCAGC | 1 cut(s) | 221 |
| GsuI | CTGGAG | 1 cut(s) | 639 |
| HaeIII | GGCC | 2 cut(s) | 522, 1320 |
| HapII | CCGG | 4 cut(s) | 557, 761, 821, 1163 |
| HinfI | GANTC | 6 cut(s) | 50, 611, 715, 779, 940, 1439 |
| HpaII | CCGG | 4 cut(s) | 557, 761, 821, 1163 |
| HphI | GGTGA | 4 cut(s) | 467, 710, 1046, 1434 |
| Hpy166II | GTNNAC | 4 cut(s) | 818, 839, 1331, 1388 |
| Hpy188I | TCNGA | 6 cut(s) | 49, 55, 84, 1145, 1297, 1346 |
| Hpy188III | TCNNGA | 5 cut(s) | 308, 432, 667, 733, 1210 |
| Hpy8I | GTNNAC | 4 cut(s) | 818, 839, 1331, 1388 |
| HpyAV | CCTTC | 4 cut(s) | 79, 655, 753, 1319 |
| HpyCH4III | ACNGT | 4 cut(s) | 158, 967, 1200, 1271 |
| HpyCH4IV | ACGT | 1 cut(s) | 1384 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 242, 1430 |
| HpyF3I | CTNAG | 5 cut(s) | 213, 306, 773, 1098, 1446 |
| HpySE526I | ACGT | 1 cut(s) | 1384 |
| KpnI | GGTACC | 2 cut(s) | 1169, 1311 |
| Ksp22I | TGATCA | 1 cut(s) | 130 |
| Kzo9I | GATC | 5 cut(s) | 130, 310, 891, 1036, 1221 |
| LmnI | GCTCC | 2 cut(s) | 1136, 1467 |
| Lsp1109I | GCAGC | 4 cut(s) | 754, 873, 1370, 1411 |
| LweI | GCATC | 6 cut(s) | 497, 616, 726, 754, 1187, 1459 |
| MabI | ACCWGGT | 1 cut(s) | 1081 |
| MaeI | CTAG | 1 cut(s) | 1322 |
| MaeII | ACGT | 1 cut(s) | 1384 |
| MaeIII | GTNAC | 4 cut(s) | 550, 664, 683, 1440 |
| MalI | GATC | 5 cut(s) | 132, 312, 893, 1038, 1223 |
| MboI | GATC | 5 cut(s) | 130, 310, 891, 1036, 1221 |
| MboII | GAAGA | 2 cut(s) | 59, 175 |
| MflI | RGATCY | 1 cut(s) | 891 |
| MhlI | GDGCHC | 2 cut(s) | 327, 537 |
| MluCI | AATT | 6 cut(s) | 12, 78, 368, 564, 597, 1107 |
| MlyI | GAGTC | 3 cut(s) | 788, 949, 1448 |
| MmeI | TCCRAC | 4 cut(s) | 239, 616, 832, 869 |
| Mph1103I | ATGCAT | 3 cut(s) | 208, 1292, 1305 |
| MseI | TTAA | 7 cut(s) | 276, 446, 581, 641, 827, 969, 1484 |
| MslI | CAYNNNNRTG | 2 cut(s) | 270, 1506 |
| MspA1I | CMGCKG | 1 cut(s) | 217 |
| MspI | CCGG | 4 cut(s) | 557, 761, 821, 1163 |
| MspR9I | CCNGG | 4 cut(s) | 544, 756, 924, 1083 |
| Mva1269I | GAATGC | 1 cut(s) | 1139 |
| MvaI | CCWGG | 4 cut(s) | 544, 756, 924, 1083 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 242, 1430 |
| NdeII | GATC | 5 cut(s) | 130, 310, 891, 1036, 1221 |
| NlaIV | GGNNCC | 6 cut(s) | 263, 541, 893, 1167, 1309, 1463 |
| NmuCI | GTSAC | 4 cut(s) | 550, 664, 683, 1440 |
| NsiI | ATGCAT | 3 cut(s) | 208, 1292, 1305 |
| NspI | RCATGY | 2 cut(s) | 679, 1290 |
| OliI | CACNNNNGTG | 1 cut(s) | 1506 |
| PaeI | GCATGC | 1 cut(s) | 1290 |
| PaeR7I | CTCGAG | 1 cut(s) | 432 |
| PciI | ACATGT | 1 cut(s) | 675 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1390 |
| PctI | GAATGC | 1 cut(s) | 1139 |
| PfeI | GAWTC | 3 cut(s) | 50, 611, 715 |
| PinAI | ACCGGT | 2 cut(s) | 820, 1162 |
| PkrI | GCNGC | 4 cut(s) | 769, 863, 1360, 1426 |
| PleI | GAGTC | 3 cut(s) | 787, 948, 1447 |
| PpsI | GAGTC | 3 cut(s) | 787, 948, 1447 |
| PscI | ACATGT | 1 cut(s) | 675 |
| PshBI | ATTAAT | 1 cut(s) | 641 |
| PsiI | TTATAA | 1 cut(s) | 32 |
| Psp6I | CCWGG | 4 cut(s) | 542, 754, 922, 1081 |
| PspFI | CCCAGC | 1 cut(s) | 217 |
| PspGI | CCWGG | 4 cut(s) | 542, 754, 922, 1081 |
| PspN4I | GGNNCC | 6 cut(s) | 263, 541, 893, 1167, 1309, 1463 |
| PspPI | GGNCC | 2 cut(s) | 520, 758 |
| PstI | CTGCAG | 1 cut(s) | 1435 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1181 |
| PsuI | RGATCY | 1 cut(s) | 891 |
| PvuII | CAGCTG | 1 cut(s) | 217 |
| RsaI | GTAC | 7 cut(s) | 96, 143, 318, 1167, 1309, 1387, 1497 |
| RsaNI | GTAC | 7 cut(s) | 95, 142, 317, 1166, 1308, 1386, 1496 |
| RseI | CAYNNNNRTG | 2 cut(s) | 270, 1506 |
| SaqAI | TTAA | 7 cut(s) | 276, 446, 581, 641, 827, 969, 1484 |
| SatI | GCNGC | 4 cut(s) | 768, 862, 1359, 1425 |
| Sau3AI | GATC | 5 cut(s) | 130, 310, 891, 1036, 1221 |
| Sau96I | GGNCC | 2 cut(s) | 520, 758 |
| SchI | GAGTC | 3 cut(s) | 788, 949, 1448 |
| ScrFI | CCNGG | 4 cut(s) | 544, 756, 924, 1083 |
| SduI | GDGCHC | 2 cut(s) | 327, 537 |
| SexAI | ACCWGGT | 1 cut(s) | 1081 |
| SfaNI | GCATC | 6 cut(s) | 497, 616, 726, 754, 1187, 1459 |
| SfcI | CTRYAG | 3 cut(s) | 385, 1270, 1431 |
| Sfr274I | CTCGAG | 1 cut(s) | 432 |
| SinI | GGWCC | 1 cut(s) | 758 |
| SlaI | CTCGAG | 1 cut(s) | 432 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 270, 1506 |
| SmlI | CTYRAG | 2 cut(s) | 402, 432 |
| SmoI | CTYRAG | 2 cut(s) | 402, 432 |
| SphI | GCATGC | 1 cut(s) | 1290 |
| Sse9I | AATT | 6 cut(s) | 12, 78, 368, 564, 597, 1107 |
| SsiI | CCGC | 1 cut(s) | 496 |
| SspMI | CTAG | 1 cut(s) | 1322 |
| StyD4I | CCNGG | 4 cut(s) | 542, 754, 922, 1081 |
| TaaI | ACNGT | 4 cut(s) | 158, 967, 1200, 1271 |
| TaiI | ACGT | 1 cut(s) | 1387 |
| TaqI | TCGA | 5 cut(s) | 112, 433, 481, 870, 1393 |
| TasI | AATT | 6 cut(s) | 12, 78, 368, 564, 597, 1107 |
| TatI | WGTACW | 2 cut(s) | 94, 1495 |
| TfiI | GAWTC | 3 cut(s) | 50, 611, 715 |
| Tru1I | TTAA | 7 cut(s) | 276, 446, 581, 641, 827, 969, 1484 |
| Tru9I | TTAA | 7 cut(s) | 276, 446, 581, 641, 827, 969, 1484 |
| TscAI | CASTG | 4 cut(s) | 65, 663, 712, 913 |
| TseFI | GTSAC | 4 cut(s) | 550, 664, 683, 1440 |
| TseI | GCWGC | 4 cut(s) | 767, 861, 1358, 1424 |
| Tsp45I | GTSAC | 4 cut(s) | 550, 664, 683, 1440 |
| TspDTI | ATGAA | 5 cut(s) | 192, 467, 707, 824, 1143 |
| TspGWI | ACGGA | 2 cut(s) | 113, 552 |
| TspRI | CASTG | 4 cut(s) | 65, 663, 712, 913 |
| VpaK11BI | GGWCC | 1 cut(s) | 758 |
| VspI | ATTAAT | 1 cut(s) | 641 |
| XapI | RAATTY | 4 cut(s) | 78, 368, 564, 597 |
| XceI | RCATGY | 2 cut(s) | 679, 1290 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 792 |
| XhoI | CTCGAG | 1 cut(s) | 432 |
| XmiI | GTMKAC | 2 cut(s) | 817, 1330 |
| XspI | CTAG | 1 cut(s) | 1322 |
| Zsp2I | ATGCAT | 3 cut(s) | 208, 1292, 1305 |