ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Actin | PF00022 | 4 - 434 | 2.2e-162 | Actin |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1060 |
| AccII | CGCG | 1 cut(s) | 1044 |
| AciI | CCGC | 1 cut(s) | 9 |
| AclWI | GGATC | 7 cut(s) | 158, 163, 249, 338, 535, 895, 898 |
| AcoI | YGGCCR | 3 cut(s) | 24, 490, 868 |
| AcsI | RAATTY | 2 cut(s) | 602, 958 |
| AfaI | GTAC | 4 cut(s) | 5, 915, 1265, 1290 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 268, 596 |
| AgsI | TTSAA | 5 cut(s) | 428, 673, 834, 881, 901 |
| AjiI | CACGTC | 1 cut(s) | 1030 |
| AjnI | CCWGG | 2 cut(s) | 691, 946 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 160, 192 |
| AluBI | AGCT | 8 cut(s) | 224, 418, 741, 748, 825, 859, 935, 1142 |
| AluI | AGCT | 8 cut(s) | 224, 418, 741, 748, 825, 859, 935, 1142 |
| Alw21I | GWGCWC | 1 cut(s) | 420 |
| Alw26I | GTCTC | 1 cut(s) | 1137 |
| AlwI | GGATC | 7 cut(s) | 158, 163, 249, 338, 535, 895, 898 |
| AoxI | GGCC | 4 cut(s) | 24, 60, 490, 868 |
| ApeKI | GCWGC | 2 cut(s) | 256, 1142 |
| ApoI | RAATTY | 2 cut(s) | 602, 958 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 613, 645 |
| AspLEI | GCGC | 2 cut(s) | 85, 802 |
| AspS9I | GGNCC | 1 cut(s) | 313 |
| AsuHPI | GGTGA | 1 cut(s) | 23 |
| AvaII | GGWCC | 1 cut(s) | 313 |
| BaeGI | GKGCMC | 1 cut(s) | 1304 |
| BalI | TGGCCA | 1 cut(s) | 870 |
| BanII | GRGCYC | 1 cut(s) | 420 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1204, 1236 |
| Bbv12I | GWGCWC | 1 cut(s) | 420 |
| BbvI | GCAGC | 2 cut(s) | 243, 1129 |
| BccI | CCATC | 7 cut(s) | 35, 109, 266, 385, 548, 860, 934 |
| BceAI | ACGGC | 3 cut(s) | 22, 426, 477 |
| BciT130I | CCWGG | 2 cut(s) | 693, 948 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BcoDI | GTCTC | 1 cut(s) | 1137 |
| BfaI | CTAG | 2 cut(s) | 771, 1146 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfoI | RGCGCY | 1 cut(s) | 803 |
| BisI | GCNGC | 2 cut(s) | 257, 1143 |
| BlsI | GCNGC | 2 cut(s) | 258, 1144 |
| Bme1390I | CCNGG | 2 cut(s) | 693, 948 |
| Bme18I | GGWCC | 1 cut(s) | 313 |
| BmgBI | CACGTC | 1 cut(s) | 1030 |
| BmgT120I | GGNCC | 1 cut(s) | 313 |
| BmiI | GGNNCC | 2 cut(s) | 46, 314 |
| BmrFI | CCNGG | 2 cut(s) | 693, 948 |
| BmrI | ACTGGG | 1 cut(s) | 298 |
| BmsI | GCATC | 5 cut(s) | 70, 283, 364, 494, 1091 |
| BmuI | ACTGGG | 1 cut(s) | 298 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1038 |
| BpmI | CTGGAG | 3 cut(s) | 528, 714, 1145 |
| Bpu10I | CCTNAGC | 1 cut(s) | 931 |
| BpuEI | CTTGAG | 2 cut(s) | 204, 1130 |
| BsaAI | YACGTR | 1 cut(s) | 1288 |
| BsaJI | CCNNGG | 4 cut(s) | 40, 87, 189, 1254 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 29, 59, 267, 297, 526, 556 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 268, 596 |
| Bse118I | RCCGGY | 2 cut(s) | 62, 71 |
| Bse1I | ACTGG | 2 cut(s) | 293, 545 |
| BseBI | CCWGG | 2 cut(s) | 693, 948 |
| BseDI | CCNNGG | 4 cut(s) | 40, 87, 189, 1254 |
| BseGI | GGATG | 6 cut(s) | 277, 298, 355, 581, 926, 1035 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 268, 596 |
| BseMII | CTCAG | 2 cut(s) | 950, 1251 |
| BseNI | ACTGG | 2 cut(s) | 293, 545 |
| BseRI | GAGGAG | 3 cut(s) | 612, 1142, 1283 |
| BseSI | GKGCMC | 1 cut(s) | 1304 |
| BseXI | GCAGC | 2 cut(s) | 243, 1129 |
| BseYI | CCCAGC | 1 cut(s) | 390 |
| BsgI | GTGCAG | 1 cut(s) | 814 |
| Bsh1236I | CGCG | 1 cut(s) | 1044 |
| BshFI | GGCC | 4 cut(s) | 26, 62, 492, 870 |
| BsiHKAI | GWGCWC | 1 cut(s) | 420 |
| BsiSI | CCGG | 2 cut(s) | 63, 72 |
| BslFI | GGGAC | 2 cut(s) | 326, 341 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 268, 596 |
| BsmAI | GTCTC | 1 cut(s) | 1137 |
| BsmFI | GGGAC | 2 cut(s) | 326, 341 |
| BsmI | GAATGC | 1 cut(s) | 469 |
| BsnI | GGCC | 4 cut(s) | 26, 62, 492, 870 |
| Bsp1286I | GDGCHC | 2 cut(s) | 420, 1304 |
| Bsp143I | GATC | 8 cut(s) | 121, 155, 163, 241, 343, 527, 887, 903 |
| Bsp68I | TCGCGA | 1 cut(s) | 1044 |
| BspACI | CCGC | 1 cut(s) | 9 |
| BspANI | GGCC | 4 cut(s) | 26, 62, 492, 870 |
| BspCNI | CTCAG | 2 cut(s) | 949, 1252 |
| BspFNI | CGCG | 1 cut(s) | 1044 |
| BspHI | TCATGA | 1 cut(s) | 550 |
| BspLI | GGNNCC | 2 cut(s) | 46, 314 |
| BspPI | GGATC | 7 cut(s) | 158, 163, 249, 338, 535, 895, 898 |
| BsrFI | RCCGGY | 2 cut(s) | 62, 71 |
| BsrI | ACTGG | 2 cut(s) | 293, 545 |
| BssAI | RCCGGY | 2 cut(s) | 62, 71 |
| BssECI | CCNNGG | 4 cut(s) | 40, 87, 189, 1254 |
| BssMI | GATC | 8 cut(s) | 121, 155, 163, 241, 343, 527, 887, 903 |
| BssNAI | GTATAC | 1 cut(s) | 1061 |
| BssT1I | CCWWGG | 3 cut(s) | 87, 189, 1254 |
| Bst1107I | GTATAC | 1 cut(s) | 1061 |
| Bst2UI | CCWGG | 2 cut(s) | 693, 948 |
| Bst4CI | ACNGT | 4 cut(s) | 518, 538, 918, 1095 |
| Bst6I | CTCTTC | 1 cut(s) | 987 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 361, 971 |
| BstBAI | YACGTR | 1 cut(s) | 1288 |
| BstC8I | GCNNGC | 3 cut(s) | 64, 73, 1068 |
| BstDEI | CTNAG | 4 cut(s) | 459, 931, 936, 1260 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 594 |
| BstF5I | GGATG | 6 cut(s) | 277, 298, 355, 581, 926, 1035 |
| BstFNI | CGCG | 1 cut(s) | 1044 |
| BstH2I | RGCGCY | 1 cut(s) | 803 |
| BstHHI | GCGC | 2 cut(s) | 85, 802 |
| BstKTI | GATC | 8 cut(s) | 124, 158, 166, 244, 346, 530, 890, 906 |
| BstMAI | GTCTC | 1 cut(s) | 1137 |
| BstMBI | GATC | 8 cut(s) | 121, 155, 163, 241, 343, 527, 887, 903 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 63, 68, 72, 89, 361, 464, 971 |
| BstNI | CCWGG | 2 cut(s) | 693, 948 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1038 |
| BstSCI | CCNGG | 2 cut(s) | 691, 946 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstSLI | GKGCMC | 1 cut(s) | 1304 |
| BstSNI | TACGTA | 1 cut(s) | 1288 |
| BstUI | CGCG | 1 cut(s) | 1044 |
| BstV1I | GCAGC | 2 cut(s) | 243, 1129 |
| BstX2I | RGATCY | 3 cut(s) | 155, 887, 903 |
| BstYI | RGATCY | 3 cut(s) | 155, 887, 903 |
| BstZ17I | GTATAC | 1 cut(s) | 1061 |
| BsuRI | GGCC | 4 cut(s) | 26, 62, 492, 870 |
| BtrI | CACGTC | 1 cut(s) | 1030 |
| BtsCI | GGATG | 6 cut(s) | 277, 298, 355, 581, 926, 1035 |
| BtsIMutI | CAGTG | 2 cut(s) | 523, 1198 |
| BtuMI | TCGCGA | 1 cut(s) | 1044 |
| Cac8I | GCNNGC | 3 cut(s) | 64, 73, 1068 |
| CciI | TCATGA | 1 cut(s) | 550 |
| CfoI | GCGC | 2 cut(s) | 85, 802 |
| Cfr10I | RCCGGY | 2 cut(s) | 62, 71 |
| Cfr13I | GGNCC | 1 cut(s) | 313 |
| Csp6I | GTAC | 4 cut(s) | 4, 914, 1264, 1289 |
| CviAII | CATG | 5 cut(s) | 317, 421, 454, 551, 1274 |
| CviQI | GTAC | 4 cut(s) | 4, 914, 1264, 1289 |
| DdeI | CTNAG | 4 cut(s) | 459, 931, 936, 1260 |
| DpnI | GATC | 8 cut(s) | 123, 157, 165, 243, 345, 529, 889, 905 |
| DpnII | GATC | 8 cut(s) | 121, 155, 163, 241, 343, 527, 887, 903 |
| EaeI | YGGCCR | 3 cut(s) | 24, 490, 868 |
| Eam1104I | CTCTTC | 1 cut(s) | 987 |
| EarI | CTCTTC | 1 cut(s) | 987 |
| Ecl136II | GAGCTC | 1 cut(s) | 418 |
| Eco105I | TACGTA | 1 cut(s) | 1288 |
| Eco130I | CCWWGG | 3 cut(s) | 87, 189, 1254 |
| Eco24I | GRGCYC | 1 cut(s) | 420 |
| Eco32I | GATATC | 2 cut(s) | 233, 778 |
| Eco47I | GGWCC | 1 cut(s) | 313 |
| Eco53kI | GAGCTC | 1 cut(s) | 418 |
| EcoICRI | GAGCTC | 1 cut(s) | 418 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 594 |
| EcoRII | CCWGG | 2 cut(s) | 691, 946 |
| EcoRV | GATATC | 2 cut(s) | 233, 778 |
| EcoT14I | CCWWGG | 3 cut(s) | 87, 189, 1254 |
| EcoT38I | GRGCYC | 1 cut(s) | 420 |
| ErhI | CCWWGG | 3 cut(s) | 87, 189, 1254 |
| FaeI | CATG | 5 cut(s) | 320, 424, 457, 554, 1277 |
| FaqI | GGGAC | 2 cut(s) | 326, 341 |
| FatI | CATG | 5 cut(s) | 316, 420, 453, 550, 1273 |
| FauNDI | CATATG | 2 cut(s) | 246, 814 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| FblI | GTMKAC | 1 cut(s) | 1060 |
| Fnu4HI | GCNGC | 2 cut(s) | 257, 1143 |
| FokI | GGATG | 6 cut(s) | 284, 305, 342, 568, 913, 1022 |
| FriOI | GRGCYC | 1 cut(s) | 420 |
| Fsp4HI | GCNGC | 2 cut(s) | 257, 1143 |
| FspBI | CTAG | 2 cut(s) | 771, 1146 |
| GlaI | GCGC | 2 cut(s) | 84, 801 |
| GluI | GCNGC | 2 cut(s) | 257, 1143 |
| GsaI | CCCAGC | 1 cut(s) | 394 |
| GsuI | CTGGAG | 3 cut(s) | 528, 714, 1145 |
| HaeII | RGCGCY | 1 cut(s) | 803 |
| HaeIII | GGCC | 4 cut(s) | 26, 62, 492, 870 |
| HapII | CCGG | 2 cut(s) | 63, 72 |
| HhaI | GCGC | 2 cut(s) | 85, 802 |
| Hin1II | CATG | 5 cut(s) | 320, 424, 457, 554, 1277 |
| Hin6I | GCGC | 2 cut(s) | 83, 800 |
| HinP1I | GCGC | 2 cut(s) | 83, 800 |
| HincII | GTYRAC | 2 cut(s) | 286, 514 |
| HindII | GTYRAC | 2 cut(s) | 286, 514 |
| HindIII | AAGCTT | 1 cut(s) | 222 |
| HinfI | GANTC | 5 cut(s) | 176, 897, 943, 1130, 1188 |
| HpaII | CCGG | 2 cut(s) | 63, 72 |
| HphI | GGTGA | 1 cut(s) | 23 |
| Hpy166II | GTNNAC | 5 cut(s) | 286, 514, 992, 1033, 1061 |
| Hpy188I | TCNGA | 3 cut(s) | 181, 892, 939 |
| Hpy188III | TCNNGA | 7 cut(s) | 153, 239, 551, 673, 863, 901, 1043 |
| Hpy8I | GTNNAC | 5 cut(s) | 286, 514, 992, 1033, 1061 |
| Hpy99I | CGWCG | 2 cut(s) | 240, 1044 |
| HpyAV | CCTTC | 1 cut(s) | 987 |
| HpyCH4III | ACNGT | 4 cut(s) | 518, 538, 918, 1095 |
| HpyCH4IV | ACGT | 2 cut(s) | 1029, 1287 |
| HpyCH4V | TGCA | 7 cut(s) | 57, 371, 485, 795, 965, 1090, 1175 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 63, 68, 72, 89, 361, 464, 971 |
| HpyF3I | CTNAG | 4 cut(s) | 459, 931, 936, 1260 |
| HpySE526I | ACGT | 2 cut(s) | 1029, 1287 |
| Hsp92II | CATG | 5 cut(s) | 320, 424, 457, 554, 1277 |
| HspAI | GCGC | 2 cut(s) | 83, 800 |
| KroI | GCCGGC | 2 cut(s) | 62, 71 |
| KroNI | GCCGGC | 2 cut(s) | 64, 73 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| Kzo9I | GATC | 8 cut(s) | 121, 155, 163, 241, 343, 527, 887, 903 |
| LmnI | GCTCC | 4 cut(s) | 50, 547, 979, 1270 |
| Lsp1109I | GCAGC | 2 cut(s) | 243, 1129 |
| LweI | GCATC | 5 cut(s) | 70, 283, 364, 494, 1091 |
| MaeI | CTAG | 2 cut(s) | 771, 1146 |
| MaeII | ACGT | 2 cut(s) | 1029, 1287 |
| MaeIII | GTNAC | 1 cut(s) | 1025 |
| MalI | GATC | 8 cut(s) | 123, 157, 165, 243, 345, 529, 889, 905 |
| MboI | GATC | 8 cut(s) | 121, 155, 163, 241, 343, 527, 887, 903 |
| MboII | GAAGA | 2 cut(s) | 89, 974 |
| MfeI | CAATTG | 2 cut(s) | 117, 876 |
| MflI | RGATCY | 3 cut(s) | 155, 887, 903 |
| MhlI | GDGCHC | 2 cut(s) | 420, 1304 |
| MlsI | TGGCCA | 1 cut(s) | 870 |
| MluCI | AATT | 8 cut(s) | 117, 203, 602, 765, 876, 882, 958, 1046 |
| MluNI | TGGCCA | 1 cut(s) | 870 |
| MlyI | GAGTC | 1 cut(s) | 1139 |
| Mox20I | TGGCCA | 1 cut(s) | 870 |
| MroNI | GCCGGC | 2 cut(s) | 62, 71 |
| MscI | TGGCCA | 1 cut(s) | 870 |
| MseI | TTAA | 5 cut(s) | 384, 921, 1017, 1097, 1152 |
| Msp20I | TGGCCA | 1 cut(s) | 870 |
| MspI | CCGG | 2 cut(s) | 63, 72 |
| MspR9I | CCNGG | 2 cut(s) | 693, 948 |
| MunI | CAATTG | 2 cut(s) | 117, 876 |
| Mva1269I | GAATGC | 1 cut(s) | 469 |
| MvaI | CCWGG | 2 cut(s) | 693, 948 |
| MvnI | CGCG | 1 cut(s) | 1044 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 63, 68, 72, 89, 361, 464, 971 |
| NaeI | GCCGGC | 2 cut(s) | 64, 73 |
| NdeI | CATATG | 2 cut(s) | 246, 814 |
| NdeII | GATC | 8 cut(s) | 121, 155, 163, 241, 343, 527, 887, 903 |
| NgoMIV | GCCGGC | 2 cut(s) | 62, 71 |
| NlaIII | CATG | 5 cut(s) | 320, 424, 457, 554, 1277 |
| NlaIV | GGNNCC | 2 cut(s) | 46, 314 |
| NmeAIII | GCCGAG | 1 cut(s) | 21 |
| NmuCI | GTSAC | 1 cut(s) | 1025 |
| NruI | TCGCGA | 1 cut(s) | 1044 |
| PagI | TCATGA | 1 cut(s) | 550 |
| PctI | GAATGC | 1 cut(s) | 469 |
| PdiI | GCCGGC | 2 cut(s) | 64, 73 |
| PfeI | GAWTC | 4 cut(s) | 176, 897, 943, 1188 |
| PkrI | GCNGC | 2 cut(s) | 258, 1144 |
| PleI | GAGTC | 1 cut(s) | 1138 |
| PpsI | GAGTC | 1 cut(s) | 1138 |
| Ppu21I | YACGTR | 1 cut(s) | 1288 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1038 |
| Psp124BI | GAGCTC | 1 cut(s) | 420 |
| Psp6I | CCWGG | 2 cut(s) | 691, 946 |
| PspFI | CCCAGC | 1 cut(s) | 390 |
| PspGI | CCWGG | 2 cut(s) | 691, 946 |
| PspN4I | GGNNCC | 2 cut(s) | 46, 314 |
| PspPI | GGNCC | 1 cut(s) | 313 |
| PsuI | RGATCY | 3 cut(s) | 155, 887, 903 |
| RruI | TCGCGA | 1 cut(s) | 1044 |
| RsaI | GTAC | 4 cut(s) | 5, 915, 1265, 1290 |
| RsaNI | GTAC | 4 cut(s) | 4, 914, 1264, 1289 |
| SacI | GAGCTC | 1 cut(s) | 420 |
| SaqAI | TTAA | 5 cut(s) | 384, 921, 1017, 1097, 1152 |
| SatI | GCNGC | 2 cut(s) | 257, 1143 |
| Sau3AI | GATC | 8 cut(s) | 121, 155, 163, 241, 343, 527, 887, 903 |
| Sau96I | GGNCC | 1 cut(s) | 313 |
| SchI | GAGTC | 1 cut(s) | 1139 |
| ScrFI | CCNGG | 2 cut(s) | 693, 948 |
| SduI | GDGCHC | 2 cut(s) | 420, 1304 |
| SfaNI | GCATC | 5 cut(s) | 70, 283, 364, 494, 1091 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SinI | GGWCC | 1 cut(s) | 313 |
| SmlI | CTYRAG | 2 cut(s) | 219, 1109 |
| SmoI | CTYRAG | 2 cut(s) | 219, 1109 |
| SnaBI | TACGTA | 1 cut(s) | 1288 |
| Sse9I | AATT | 8 cut(s) | 117, 203, 602, 765, 876, 882, 958, 1046 |
| SsiI | CCGC | 1 cut(s) | 9 |
| SspI | AATATT | 1 cut(s) | 838 |
| SspMI | CTAG | 2 cut(s) | 771, 1146 |
| SstI | GAGCTC | 1 cut(s) | 420 |
| StyD4I | CCNGG | 2 cut(s) | 691, 946 |
| StyI | CCWWGG | 3 cut(s) | 87, 189, 1254 |
| TaaI | ACNGT | 4 cut(s) | 518, 538, 918, 1095 |
| TaiI | ACGT | 2 cut(s) | 1032, 1290 |
| TaqI | TCGA | 1 cut(s) | 36 |
| TasI | AATT | 8 cut(s) | 117, 203, 602, 765, 876, 882, 958, 1046 |
| TatI | WGTACW | 1 cut(s) | 913 |
| TfiI | GAWTC | 4 cut(s) | 176, 897, 943, 1188 |
| Tru1I | TTAA | 5 cut(s) | 384, 921, 1017, 1097, 1152 |
| Tru9I | TTAA | 5 cut(s) | 384, 921, 1017, 1097, 1152 |
| TscAI | CASTG | 2 cut(s) | 523, 1198 |
| TseFI | GTSAC | 1 cut(s) | 1025 |
| TseI | GCWGC | 2 cut(s) | 256, 1142 |
| Tsp45I | GTSAC | 1 cut(s) | 1025 |
| TspDTI | ATGAA | 6 cut(s) | 153, 442, 539, 657, 834, 1221 |
| TspGWI | ACGGA | 2 cut(s) | 214, 1028 |
| TspRI | CASTG | 2 cut(s) | 523, 1198 |
| VpaK11BI | GGWCC | 1 cut(s) | 313 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 594 |
| XapI | RAATTY | 2 cut(s) | 602, 958 |
| XmiI | GTMKAC | 1 cut(s) | 1060 |
| XspI | CTAG | 2 cut(s) | 771, 1146 |