Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 30 - 131 | 3.5e-09 | NB-ARC domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 338 |
| AccI | GTMKAC | 1 cut(s) | 76 |
| AciI | CCGC | 1 cut(s) | 260 |
| AclWI | GGATC | 2 cut(s) | 4, 17 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 19 |
| AgsI | TTSAA | 3 cut(s) | 50, 189, 304 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 83 |
| AjiI | CACGTC | 1 cut(s) | 385 |
| AjnI | CCWGG | 1 cut(s) | 142 |
| Alw26I | GTCTC | 1 cut(s) | 262 |
| AlwI | GGATC | 2 cut(s) | 4, 17 |
| AoxI | GGCC | 1 cut(s) | 140 |
| AspS9I | GGNCC | 1 cut(s) | 140 |
| AsuHPI | GGTGA | 2 cut(s) | 319, 392 |
| BamHI | GGATCC | 1 cut(s) | 9 |
| BbsI | GAAGAC | 1 cut(s) | 30 |
| BbvCI | CCTCAGC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 1 cut(s) | 144 |
| BclI | TGATCA | 1 cut(s) | 319 |
| BcoDI | GTCTC | 1 cut(s) | 262 |
| BfaI | CTAG | 3 cut(s) | 29, 251, 377 |
| BglII | AGATCT | 1 cut(s) | 233 |
| Bme1390I | CCNGG | 1 cut(s) | 144 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 83 |
| BmgBI | CACGTC | 1 cut(s) | 385 |
| BmgT120I | GGNCC | 1 cut(s) | 140 |
| BmiI | GGNNCC | 2 cut(s) | 11, 141 |
| BmrFI | CCNGG | 1 cut(s) | 144 |
| BmsI | GCATC | 1 cut(s) | 339 |
| BoxI | GACNNNNGTC | 1 cut(s) | 387 |
| BpiI | GAAGAC | 1 cut(s) | 30 |
| BpmI | CTGGAG | 1 cut(s) | 59 |
| Bpu10I | CCTNAGC | 1 cut(s) | 105 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 19 |
| Bse1I | ACTGG | 1 cut(s) | 42 |
| BseBI | CCWGG | 1 cut(s) | 144 |
| BseGI | GGATG | 2 cut(s) | 52, 354 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 19 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseNI | ACTGG | 1 cut(s) | 42 |
| BshFI | GGCC | 1 cut(s) | 142 |
| BslFI | GGGAC | 1 cut(s) | 305 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 19 |
| BsmAI | GTCTC | 1 cut(s) | 262 |
| BsmFI | GGGAC | 1 cut(s) | 305 |
| BsnI | GGCC | 1 cut(s) | 142 |
| Bsp143I | GATC | 3 cut(s) | 9, 233, 319 |
| BspACI | CCGC | 1 cut(s) | 260 |
| BspANI | GGCC | 1 cut(s) | 142 |
| BspCNI | CTCAG | 1 cut(s) | 97 |
| BspLI | GGNNCC | 2 cut(s) | 11, 141 |
| BspPI | GGATC | 2 cut(s) | 4, 17 |
| BsrI | ACTGG | 1 cut(s) | 42 |
| BssMI | GATC | 3 cut(s) | 9, 233, 319 |
| Bst2UI | CCWGG | 1 cut(s) | 144 |
| BstDEI | CTNAG | 1 cut(s) | 105 |
| BstF5I | GGATG | 2 cut(s) | 52, 354 |
| BstKTI | GATC | 3 cut(s) | 12, 236, 322 |
| BstMAI | GTCTC | 1 cut(s) | 262 |
| BstMBI | GATC | 3 cut(s) | 9, 233, 319 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 129 |
| BstNI | CCWGG | 1 cut(s) | 144 |
| BstNSI | RCATGY | 1 cut(s) | 104 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 387 |
| BstSCI | CCNGG | 1 cut(s) | 142 |
| BstV2I | GAAGAC | 1 cut(s) | 30 |
| BstX2I | RGATCY | 2 cut(s) | 9, 233 |
| BstYI | RGATCY | 2 cut(s) | 9, 233 |
| BsuRI | GGCC | 1 cut(s) | 142 |
| BtrI | CACGTC | 1 cut(s) | 385 |
| BtsCI | GGATG | 2 cut(s) | 52, 354 |
| BtsI | GCAGTG | 1 cut(s) | 319 |
| BtsIMutI | CAGTG | 1 cut(s) | 319 |
| Cfr13I | GGNCC | 1 cut(s) | 140 |
| CviAII | CATG | 1 cut(s) | 101 |
| CviJI | RGCY | 1 cut(s) | 142 |
| CviKI_1 | RGCY | 1 cut(s) | 142 |
| DdeI | CTNAG | 1 cut(s) | 105 |
| DpnI | GATC | 3 cut(s) | 11, 235, 321 |
| DpnII | GATC | 3 cut(s) | 9, 233, 319 |
| DriI | GACNNNNNGTC | 1 cut(s) | 83 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 83 |
| EcoO109I | RGGNCCY | 1 cut(s) | 140 |
| EcoRII | CCWGG | 1 cut(s) | 142 |
| FaeI | CATG | 1 cut(s) | 104 |
| FaiI | YATR | 6 cut(s) | 102, 134, 136, 198, 338, 357 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 255, 287 |
| FaqI | GGGAC | 1 cut(s) | 305 |
| FatI | CATG | 1 cut(s) | 100 |
| FauNDI | CATATG | 1 cut(s) | 134 |
| FbaI | TGATCA | 1 cut(s) | 319 |
| FblI | GTMKAC | 1 cut(s) | 76 |
| FokI | GGATG | 2 cut(s) | 39, 361 |
| FspBI | CTAG | 3 cut(s) | 29, 251, 377 |
| GsuI | CTGGAG | 1 cut(s) | 59 |
| HaeIII | GGCC | 1 cut(s) | 142 |
| Hin1II | CATG | 1 cut(s) | 104 |
| HincII | GTYRAC | 1 cut(s) | 88 |
| HindII | GTYRAC | 1 cut(s) | 88 |
| HinfI | GANTC | 3 cut(s) | 68, 293, 388 |
| HphI | GGTGA | 2 cut(s) | 319, 392 |
| Hpy166II | GTNNAC | 2 cut(s) | 77, 88 |
| Hpy188I | TCNGA | 1 cut(s) | 244 |
| Hpy8I | GTNNAC | 2 cut(s) | 77, 88 |
| HpyAV | CCTTC | 1 cut(s) | 298 |
| HpyCH4IV | ACGT | 1 cut(s) | 384 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 129 |
| HpyF3I | CTNAG | 1 cut(s) | 105 |
| HpySE526I | ACGT | 1 cut(s) | 384 |
| Hsp92II | CATG | 1 cut(s) | 104 |
| Ksp22I | TGATCA | 1 cut(s) | 319 |
| Kzo9I | GATC | 3 cut(s) | 9, 233, 319 |
| LpnPI | CCDG | 4 cut(s) | 23, 26, 129, 156 |
| LweI | GCATC | 1 cut(s) | 339 |
| MaeI | CTAG | 3 cut(s) | 29, 251, 377 |
| MaeII | ACGT | 1 cut(s) | 384 |
| MaeIII | GTNAC | 1 cut(s) | 380 |
| MalI | GATC | 3 cut(s) | 11, 235, 321 |
| MboI | GATC | 3 cut(s) | 9, 233, 319 |
| MboII | GAAGA | 1 cut(s) | 35 |
| MfeI | CAATTG | 1 cut(s) | 57 |
| MflI | RGATCY | 2 cut(s) | 9, 233 |
| MluCI | AATT | 7 cut(s) | 57, 165, 184, 189, 211, 238, 372 |
| MlyI | GAGTC | 3 cut(s) | 77, 287, 397 |
| MmeI | TCCRAC | 1 cut(s) | 280 |
| MnlI | CCTC | 1 cut(s) | 100 |
| MseI | TTAA | 3 cut(s) | 183, 287, 371 |
| MspR9I | CCNGG | 1 cut(s) | 144 |
| MunI | CAATTG | 1 cut(s) | 57 |
| MvaI | CCWGG | 1 cut(s) | 144 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 129 |
| NdeI | CATATG | 1 cut(s) | 134 |
| NdeII | GATC | 3 cut(s) | 9, 233, 319 |
| NlaIII | CATG | 1 cut(s) | 104 |
| NlaIV | GGNNCC | 2 cut(s) | 11, 141 |
| NmuCI | GTSAC | 1 cut(s) | 380 |
| NspI | RCATGY | 1 cut(s) | 104 |
| PleI | GAGTC | 3 cut(s) | 76, 287, 396 |
| PpsI | GAGTC | 3 cut(s) | 76, 287, 396 |
| PshAI | GACNNNNGTC | 1 cut(s) | 387 |
| PsiI | TTATAA | 1 cut(s) | 338 |
| Psp6I | CCWGG | 1 cut(s) | 142 |
| PspGI | CCWGG | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 2 cut(s) | 11, 141 |
| PspPI | GGNCC | 1 cut(s) | 140 |
| PsuI | RGATCY | 2 cut(s) | 9, 233 |
| SaqAI | TTAA | 3 cut(s) | 183, 287, 371 |
| Sau3AI | GATC | 3 cut(s) | 9, 233, 319 |
| Sau96I | GGNCC | 1 cut(s) | 140 |
| SchI | GAGTC | 3 cut(s) | 77, 287, 397 |
| ScrFI | CCNGG | 1 cut(s) | 144 |
| SetI | ASST | 5 cut(s) | 30, 85, 309, 382, 387 |
| SfaNI | GCATC | 1 cut(s) | 339 |
| Sse9I | AATT | 7 cut(s) | 57, 165, 184, 189, 211, 238, 372 |
| SsiI | CCGC | 1 cut(s) | 260 |
| SspI | AATATT | 1 cut(s) | 115 |
| SspMI | CTAG | 3 cut(s) | 29, 251, 377 |
| StyD4I | CCNGG | 1 cut(s) | 142 |
| TaiI | ACGT | 1 cut(s) | 387 |
| TasI | AATT | 7 cut(s) | 57, 165, 184, 189, 211, 238, 372 |
| Tru1I | TTAA | 3 cut(s) | 183, 287, 371 |
| Tru9I | TTAA | 3 cut(s) | 183, 287, 371 |
| TscAI | CASTG | 1 cut(s) | 319 |
| TseFI | GTSAC | 1 cut(s) | 380 |
| Tsp45I | GTSAC | 1 cut(s) | 380 |
| TspRI | CASTG | 1 cut(s) | 319 |
| XceI | RCATGY | 1 cut(s) | 104 |
| XmiI | GTMKAC | 1 cut(s) | 76 |
| XspI | CTAG | 3 cut(s) | 29, 251, 377 |