ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 34 |
| AccBSI | CCGCTC | 1 cut(s) | 290 |
| AciI | CCGC | 5 cut(s) | 104, 154, 290, 303, 356 |
| AclWI | GGATC | 1 cut(s) | 438 |
| AcyI | GRCGYC | 1 cut(s) | 35 |
| AfaI | GTAC | 2 cut(s) | 94, 565 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 249 |
| AgsI | TTSAA | 2 cut(s) | 271, 530 |
| AluBI | AGCT | 3 cut(s) | 227, 277, 533 |
| AluI | AGCT | 3 cut(s) | 227, 277, 533 |
| Alw21I | GWGCWC | 1 cut(s) | 279 |
| AlwI | GGATC | 1 cut(s) | 438 |
| ApeKI | GCWGC | 1 cut(s) | 227 |
| AspLEI | GCGC | 2 cut(s) | 37, 319 |
| AspS9I | GGNCC | 3 cut(s) | 207, 283, 305 |
| AsuHPI | GGTGA | 1 cut(s) | 151 |
| AvaII | GGWCC | 3 cut(s) | 207, 283, 305 |
| BanI | GGYRCC | 1 cut(s) | 34 |
| BanII | GRGCYC | 1 cut(s) | 279 |
| BauI | CACGAG | 1 cut(s) | 312 |
| Bbv12I | GWGCWC | 1 cut(s) | 279 |
| BbvI | GCAGC | 1 cut(s) | 214 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 413, 447 |
| BclI | TGATCA | 1 cut(s) | 508 |
| BfaI | CTAG | 2 cut(s) | 224, 534 |
| BfoI | RGCGCY | 1 cut(s) | 38 |
| BisI | GCNGC | 2 cut(s) | 228, 357 |
| BlsI | GCNGC | 2 cut(s) | 229, 358 |
| Bme18I | GGWCC | 3 cut(s) | 207, 283, 305 |
| BmgT120I | GGNCC | 3 cut(s) | 207, 283, 305 |
| BmiI | GGNNCC | 2 cut(s) | 36, 209 |
| BmsI | GCATC | 1 cut(s) | 115 |
| BsaAI | YACGTR | 1 cut(s) | 92 |
| BsaBI | GATNNNNATC | 1 cut(s) | 513 |
| BsaHI | GRCGYC | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 1 cut(s) | 248 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 85, 115 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 249 |
| Bse3DI | GCAATG | 1 cut(s) | 488 |
| Bse8I | GATNNNNATC | 1 cut(s) | 513 |
| BseDI | CCNNGG | 1 cut(s) | 248 |
| BseJI | GATNNNNATC | 1 cut(s) | 513 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 249 |
| BseMI | GCAATG | 1 cut(s) | 488 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseRI | GAGGAG | 1 cut(s) | 300 |
| BseXI | GCAGC | 1 cut(s) | 214 |
| BshNI | GGYRCC | 1 cut(s) | 34 |
| BsiHKAI | GWGCWC | 1 cut(s) | 279 |
| BsiSI | CCGG | 1 cut(s) | 38 |
| BslFI | GGGAC | 1 cut(s) | 193 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 249 |
| BsmFI | GGGAC | 1 cut(s) | 193 |
| Bsp1286I | GDGCHC | 1 cut(s) | 279 |
| Bsp143I | GATC | 3 cut(s) | 430, 508, 552 |
| BspACI | CCGC | 5 cut(s) | 104, 154, 290, 303, 356 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspHI | TCATGA | 1 cut(s) | 70 |
| BspLI | GGNNCC | 2 cut(s) | 36, 209 |
| BspPI | GGATC | 1 cut(s) | 438 |
| BspT107I | GGYRCC | 1 cut(s) | 34 |
| BsrBI | CCGCTC | 1 cut(s) | 290 |
| BsrDI | GCAATG | 1 cut(s) | 488 |
| BssECI | CCNNGG | 1 cut(s) | 248 |
| BssMI | GATC | 3 cut(s) | 430, 508, 552 |
| BssNI | GRCGYC | 1 cut(s) | 35 |
| BssSI | CACGAG | 1 cut(s) | 312 |
| BssT1I | CCWWGG | 1 cut(s) | 248 |
| Bst2BI | CACGAG | 1 cut(s) | 312 |
| BstACI | GRCGYC | 1 cut(s) | 35 |
| BstBAI | YACGTR | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 321 |
| BstDEI | CTNAG | 2 cut(s) | 231, 365 |
| BstH2I | RGCGCY | 1 cut(s) | 38 |
| BstHHI | GCGC | 2 cut(s) | 37, 319 |
| BstKTI | GATC | 3 cut(s) | 433, 511, 555 |
| BstMBI | GATC | 3 cut(s) | 430, 508, 552 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 43, 227, 329 |
| BstSNI | TACGTA | 1 cut(s) | 92 |
| BstV1I | GCAGC | 1 cut(s) | 214 |
| BtsI | GCAGTG | 1 cut(s) | 63 |
| BtsIMutI | CAGTG | 1 cut(s) | 63 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 321 |
| CciI | TCATGA | 1 cut(s) | 70 |
| CfoI | GCGC | 2 cut(s) | 37, 319 |
| Cfr13I | GGNCC | 3 cut(s) | 207, 283, 305 |
| CseI | GACGC | 1 cut(s) | 13 |
| Csp6I | GTAC | 2 cut(s) | 93, 564 |
| CviAII | CATG | 7 cut(s) | 71, 80, 204, 256, 280, 399, 442 |
| CviQI | GTAC | 2 cut(s) | 93, 564 |
| DdeI | CTNAG | 2 cut(s) | 231, 365 |
| DinI | GGCGCC | 1 cut(s) | 36 |
| DpnI | GATC | 3 cut(s) | 432, 510, 554 |
| DpnII | GATC | 3 cut(s) | 430, 508, 552 |
| Ecl136II | GAGCTC | 1 cut(s) | 277 |
| Eco105I | TACGTA | 1 cut(s) | 92 |
| Eco130I | CCWWGG | 1 cut(s) | 248 |
| Eco24I | GRGCYC | 1 cut(s) | 279 |
| Eco47I | GGWCC | 3 cut(s) | 207, 283, 305 |
| Eco53kI | GAGCTC | 1 cut(s) | 277 |
| EcoICRI | GAGCTC | 1 cut(s) | 277 |
| EcoT14I | CCWWGG | 1 cut(s) | 248 |
| EcoT38I | GRGCYC | 1 cut(s) | 279 |
| EgeI | GGCGCC | 1 cut(s) | 36 |
| EheI | GGCGCC | 1 cut(s) | 36 |
| ErhI | CCWWGG | 1 cut(s) | 248 |
| FaeI | CATG | 7 cut(s) | 74, 83, 207, 259, 283, 402, 445 |
| FaqI | GGGAC | 1 cut(s) | 193 |
| FatI | CATG | 7 cut(s) | 70, 79, 203, 255, 279, 398, 441 |
| FbaI | TGATCA | 1 cut(s) | 508 |
| Fnu4HI | GCNGC | 2 cut(s) | 228, 357 |
| FriOI | GRGCYC | 1 cut(s) | 279 |
| Fsp4HI | GCNGC | 2 cut(s) | 228, 357 |
| FspBI | CTAG | 2 cut(s) | 224, 534 |
| GlaI | GCGC | 2 cut(s) | 36, 318 |
| GluI | GCNGC | 2 cut(s) | 228, 357 |
| HaeII | RGCGCY | 1 cut(s) | 38 |
| HapII | CCGG | 1 cut(s) | 38 |
| HgaI | GACGC | 1 cut(s) | 13 |
| HhaI | GCGC | 2 cut(s) | 37, 319 |
| Hin1I | GRCGYC | 1 cut(s) | 35 |
| Hin1II | CATG | 7 cut(s) | 74, 83, 207, 259, 283, 402, 445 |
| Hin6I | GCGC | 2 cut(s) | 35, 317 |
| HinP1I | GCGC | 2 cut(s) | 35, 317 |
| HinfI | GANTC | 4 cut(s) | 41, 67, 378, 503 |
| HpaII | CCGG | 1 cut(s) | 38 |
| HphI | GGTGA | 1 cut(s) | 151 |
| Hpy166II | GTNNAC | 1 cut(s) | 159 |
| Hpy188I | TCNGA | 5 cut(s) | 128, 287, 502, 508, 552 |
| Hpy188III | TCNNGA | 1 cut(s) | 71 |
| Hpy8I | GTNNAC | 1 cut(s) | 159 |
| HpyAV | CCTTC | 1 cut(s) | 507 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 1 cut(s) | 56 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 43, 227, 329 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 365 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| Hsp92I | GRCGYC | 1 cut(s) | 35 |
| Hsp92II | CATG | 7 cut(s) | 74, 83, 207, 259, 283, 402, 445 |
| HspAI | GCGC | 2 cut(s) | 35, 317 |
| KasI | GGCGCC | 1 cut(s) | 34 |
| Ksp22I | TGATCA | 1 cut(s) | 508 |
| Kzo9I | GATC | 3 cut(s) | 430, 508, 552 |
| LmnI | GCTCC | 1 cut(s) | 328 |
| LpnPI | CCDG | 4 cut(s) | 51, 179, 246, 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 214 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeI | CTAG | 2 cut(s) | 224, 534 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MaeIII | GTNAC | 1 cut(s) | 368 |
| MalI | GATC | 3 cut(s) | 432, 510, 554 |
| MbiI | CCGCTC | 1 cut(s) | 290 |
| MboI | GATC | 3 cut(s) | 430, 508, 552 |
| MboII | GAAGA | 1 cut(s) | 200 |
| MhlI | GDGCHC | 1 cut(s) | 279 |
| MluCI | AATT | 1 cut(s) | 483 |
| Mly113I | GGCGCC | 1 cut(s) | 35 |
| MlyI | GAGTC | 2 cut(s) | 76, 497 |
| MnlI | CCTC | 5 cut(s) | 318, 321, 346, 428, 577 |
| MseI | TTAA | 1 cut(s) | 473 |
| MslI | CAYNNNNRTG | 1 cut(s) | 114 |
| MspI | CCGG | 1 cut(s) | 38 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 43, 227, 329 |
| NarI | GGCGCC | 1 cut(s) | 35 |
| NdeII | GATC | 3 cut(s) | 430, 508, 552 |
| NlaIII | CATG | 7 cut(s) | 74, 83, 207, 259, 283, 402, 445 |
| NlaIV | GGNNCC | 2 cut(s) | 36, 209 |
| NmuCI | GTSAC | 1 cut(s) | 368 |
| PagI | TCATGA | 1 cut(s) | 70 |
| PfeI | GAWTC | 2 cut(s) | 41, 378 |
| PkrI | GCNGC | 2 cut(s) | 229, 358 |
| PleI | GAGTC | 2 cut(s) | 75, 497 |
| PluTI | GGCGCC | 1 cut(s) | 38 |
| PpsI | GAGTC | 2 cut(s) | 75, 497 |
| Ppu21I | YACGTR | 1 cut(s) | 92 |
| Psp124BI | GAGCTC | 1 cut(s) | 279 |
| PspN4I | GGNNCC | 2 cut(s) | 36, 209 |
| PspPI | GGNCC | 3 cut(s) | 207, 283, 305 |
| RsaI | GTAC | 2 cut(s) | 94, 565 |
| RsaNI | GTAC | 2 cut(s) | 93, 564 |
| RseI | CAYNNNNRTG | 1 cut(s) | 114 |
| SacI | GAGCTC | 1 cut(s) | 279 |
| SaqAI | TTAA | 1 cut(s) | 473 |
| SatI | GCNGC | 2 cut(s) | 228, 357 |
| Sau3AI | GATC | 3 cut(s) | 430, 508, 552 |
| Sau96I | GGNCC | 3 cut(s) | 207, 283, 305 |
| SchI | GAGTC | 2 cut(s) | 76, 497 |
| SduI | GDGCHC | 1 cut(s) | 279 |
| SetI | ASST | 7 cut(s) | 94, 168, 229, 250, 279, 535, 575 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SfoI | GGCGCC | 1 cut(s) | 36 |
| SinI | GGWCC | 3 cut(s) | 207, 283, 305 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 114 |
| SnaBI | TACGTA | 1 cut(s) | 92 |
| Sse9I | AATT | 1 cut(s) | 483 |
| SsiI | CCGC | 5 cut(s) | 104, 154, 290, 303, 356 |
| SspDI | GGCGCC | 1 cut(s) | 34 |
| SspI | AATATT | 1 cut(s) | 19 |
| SspMI | CTAG | 2 cut(s) | 224, 534 |
| SstI | GAGCTC | 1 cut(s) | 279 |
| StyI | CCWWGG | 1 cut(s) | 248 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 2 cut(s) | 340, 433 |
| TasI | AATT | 1 cut(s) | 483 |
| TauI | GCSGC | 1 cut(s) | 359 |
| TfiI | GAWTC | 2 cut(s) | 41, 378 |
| Tru1I | TTAA | 1 cut(s) | 473 |
| Tru9I | TTAA | 1 cut(s) | 473 |
| TscAI | CASTG | 1 cut(s) | 63 |
| TseFI | GTSAC | 1 cut(s) | 368 |
| TseI | GCWGC | 1 cut(s) | 227 |
| Tsp45I | GTSAC | 1 cut(s) | 368 |
| TspDTI | ATGAA | 3 cut(s) | 87, 159, 430 |
| TspRI | CASTG | 1 cut(s) | 63 |
| VpaK11BI | GGWCC | 3 cut(s) | 207, 283, 305 |
| XspI | CTAG | 2 cut(s) | 224, 534 |