ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 350 |
| AccBSI | CCGCTC | 1 cut(s) | 337 |
| AciI | CCGC | 1 cut(s) | 335 |
| AcsI | RAATTY | 1 cut(s) | 209 |
| AcvI | CACGTG | 1 cut(s) | 550 |
| AflIII | ACRYGT | 1 cut(s) | 547 |
| AgsI | TTSAA | 1 cut(s) | 404 |
| AluBI | AGCT | 5 cut(s) | 158, 408, 496, 571, 578 |
| AluI | AGCT | 5 cut(s) | 158, 408, 496, 571, 578 |
| Alw21I | GWGCWC | 1 cut(s) | 573 |
| Ama87I | CYCGRG | 1 cut(s) | 199 |
| AoxI | GGCC | 1 cut(s) | 202 |
| ApaI | GGGCCC | 1 cut(s) | 206 |
| ApeKI | GCWGC | 1 cut(s) | 272 |
| ApoI | RAATTY | 1 cut(s) | 209 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 392 |
| AspS9I | GGNCC | 2 cut(s) | 202, 203 |
| AsuHPI | GGTGA | 2 cut(s) | 154, 446 |
| AvaI | CYCGRG | 1 cut(s) | 199 |
| BaeGI | GKGCMC | 2 cut(s) | 206, 555 |
| BanII | GRGCYC | 2 cut(s) | 206, 573 |
| BbrPI | CACGTG | 1 cut(s) | 550 |
| BbsI | GAAGAC | 1 cut(s) | 356 |
| Bbv12I | GWGCWC | 1 cut(s) | 573 |
| BbvI | GCAGC | 1 cut(s) | 284 |
| BccI | CCATC | 1 cut(s) | 178 |
| BfaI | CTAG | 3 cut(s) | 245, 497, 522 |
| BfmI | CTRYAG | 1 cut(s) | 153 |
| BfuAI | ACCTGC | 1 cut(s) | 350 |
| BisI | GCNGC | 2 cut(s) | 273, 335 |
| BlsI | GCNGC | 2 cut(s) | 274, 336 |
| BmeT110I | CYCGRG | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 2 cut(s) | 202, 203 |
| BmiI | GGNNCC | 1 cut(s) | 204 |
| BmsI | GCATC | 2 cut(s) | 139, 466 |
| BpiI | GAAGAC | 1 cut(s) | 356 |
| BsaAI | YACGTR | 1 cut(s) | 550 |
| BsaJI | CCNNGG | 1 cut(s) | 276 |
| BseDI | CCNNGG | 1 cut(s) | 276 |
| BseRI | GAGGAG | 1 cut(s) | 114 |
| BseSI | GKGCMC | 2 cut(s) | 206, 555 |
| BseXI | GCAGC | 1 cut(s) | 284 |
| BseYI | CCCAGC | 1 cut(s) | 158 |
| BshFI | GGCC | 1 cut(s) | 204 |
| BsiHKAI | GWGCWC | 1 cut(s) | 573 |
| BsiHKCI | CYCGRG | 1 cut(s) | 199 |
| BsnI | GGCC | 1 cut(s) | 204 |
| BsoBI | CYCGRG | 1 cut(s) | 199 |
| Bsp120I | GGGCCC | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 3 cut(s) | 206, 555, 573 |
| Bsp19I | CCATGG | 1 cut(s) | 276 |
| BspACI | CCGC | 1 cut(s) | 335 |
| BspANI | GGCC | 1 cut(s) | 204 |
| BspLI | GGNNCC | 1 cut(s) | 204 |
| BspMI | ACCTGC | 1 cut(s) | 350 |
| BspQI | GCTCTTC | 1 cut(s) | 344 |
| BsrBI | CCGCTC | 1 cut(s) | 337 |
| BssECI | CCNNGG | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 1 cut(s) | 276 |
| Bst4CI | ACNGT | 3 cut(s) | 142, 591, 633 |
| Bst6I | CTCTTC | 1 cut(s) | 344 |
| BstBAI | YACGTR | 1 cut(s) | 550 |
| BstDEI | CTNAG | 1 cut(s) | 492 |
| BstDSI | CCRYGG | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 241 |
| BstSFI | CTRYAG | 1 cut(s) | 153 |
| BstSLI | GKGCMC | 2 cut(s) | 206, 555 |
| BstV1I | GCAGC | 1 cut(s) | 284 |
| BstV2I | GAAGAC | 1 cut(s) | 356 |
| BsuRI | GGCC | 1 cut(s) | 204 |
| BtgI | CCRYGG | 1 cut(s) | 276 |
| BtsI | GCAGTG | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| BveI | ACCTGC | 1 cut(s) | 350 |
| Cfr13I | GGNCC | 2 cut(s) | 202, 203 |
| CviAII | CATG | 5 cut(s) | 216, 229, 236, 277, 296 |
| CviJI | RGCY | 9 cut(s) | 110, 158, 204, 244, 275, 408, 496, 571, 578 |
| CviKI_1 | RGCY | 9 cut(s) | 110, 158, 204, 244, 275, 408, 496, 571, 578 |
| DdeI | CTNAG | 1 cut(s) | 492 |
| DraI | TTTAAA | 1 cut(s) | 261 |
| Eam1104I | CTCTTC | 1 cut(s) | 344 |
| EarI | CTCTTC | 1 cut(s) | 344 |
| Ecl136II | GAGCTC | 1 cut(s) | 571 |
| Eco130I | CCWWGG | 1 cut(s) | 276 |
| Eco24I | GRGCYC | 2 cut(s) | 206, 573 |
| Eco53kI | GAGCTC | 1 cut(s) | 571 |
| Eco72I | CACGTG | 1 cut(s) | 550 |
| Eco88I | CYCGRG | 1 cut(s) | 199 |
| EcoICRI | GAGCTC | 1 cut(s) | 571 |
| EcoT14I | CCWWGG | 1 cut(s) | 276 |
| EcoT38I | GRGCYC | 2 cut(s) | 206, 573 |
| ErhI | CCWWGG | 1 cut(s) | 276 |
| FaeI | CATG | 5 cut(s) | 219, 232, 239, 280, 299 |
| FaiI | YATR | 9 cut(s) | 29, 60, 182, 217, 230, 237, 278, 297, 470 |
| FatI | CATG | 5 cut(s) | 215, 228, 235, 276, 295 |
| Fnu4HI | GCNGC | 2 cut(s) | 273, 335 |
| FriOI | GRGCYC | 2 cut(s) | 206, 573 |
| Fsp4HI | GCNGC | 2 cut(s) | 273, 335 |
| FspBI | CTAG | 3 cut(s) | 245, 497, 522 |
| GluI | GCNGC | 2 cut(s) | 273, 335 |
| GsaI | CCCAGC | 1 cut(s) | 162 |
| HaeIII | GGCC | 1 cut(s) | 204 |
| Hin1II | CATG | 5 cut(s) | 219, 232, 239, 280, 299 |
| HincII | GTYRAC | 1 cut(s) | 193 |
| HindII | GTYRAC | 1 cut(s) | 193 |
| HindIII | AAGCTT | 2 cut(s) | 406, 576 |
| HinfI | GANTC | 1 cut(s) | 393 |
| HphI | GGTGA | 2 cut(s) | 154, 446 |
| Hpy166II | GTNNAC | 1 cut(s) | 193 |
| Hpy188I | TCNGA | 2 cut(s) | 609, 639 |
| Hpy8I | GTNNAC | 1 cut(s) | 193 |
| HpyAV | CCTTC | 4 cut(s) | 13, 115, 416, 420 |
| HpyCH4III | ACNGT | 3 cut(s) | 142, 591, 633 |
| HpyCH4IV | ACGT | 2 cut(s) | 306, 549 |
| HpyCH4V | TGCA | 5 cut(s) | 235, 320, 509, 566, 586 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 241 |
| HpyF3I | CTNAG | 1 cut(s) | 492 |
| HpySE526I | ACGT | 2 cut(s) | 306, 549 |
| Hsp92II | CATG | 5 cut(s) | 219, 232, 239, 280, 299 |
| LguI | GCTCTTC | 1 cut(s) | 344 |
| LpnPI | CCDG | 4 cut(s) | 144, 161, 345, 439 |
| Lsp1109I | GCAGC | 1 cut(s) | 284 |
| LweI | GCATC | 2 cut(s) | 139, 466 |
| MaeI | CTAG | 3 cut(s) | 245, 497, 522 |
| MaeII | ACGT | 2 cut(s) | 306, 549 |
| MaeIII | GTNAC | 2 cut(s) | 136, 323 |
| MbiI | CCGCTC | 1 cut(s) | 337 |
| MboII | GAAGA | 7 cut(s) | 25, 28, 331, 356, 397, 470, 629 |
| MhlI | GDGCHC | 3 cut(s) | 206, 555, 573 |
| MluCI | AATT | 5 cut(s) | 50, 64, 209, 438, 540 |
| MmeI | TCCRAC | 2 cut(s) | 98, 506 |
| MnlI | CCTC | 6 cut(s) | 92, 95, 245, 442, 607, 636 |
| MroXI | GAANNNNTTC | 1 cut(s) | 392 |
| MseI | TTAA | 2 cut(s) | 63, 260 |
| MslI | CAYNNNNRTG | 2 cut(s) | 170, 309 |
| MspA1I | CMGCKG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 241 |
| NcoI | CCATGG | 1 cut(s) | 276 |
| NlaIII | CATG | 5 cut(s) | 219, 232, 239, 280, 299 |
| NlaIV | GGNNCC | 1 cut(s) | 204 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| PciSI | GCTCTTC | 1 cut(s) | 344 |
| PdmI | GAANNNNTTC | 1 cut(s) | 392 |
| PfeI | GAWTC | 1 cut(s) | 393 |
| PkrI | GCNGC | 2 cut(s) | 274, 336 |
| PmaCI | CACGTG | 1 cut(s) | 550 |
| PmlI | CACGTG | 1 cut(s) | 550 |
| Ppu21I | YACGTR | 1 cut(s) | 550 |
| Psp124BI | GAGCTC | 1 cut(s) | 573 |
| PspCI | CACGTG | 1 cut(s) | 550 |
| PspFI | CCCAGC | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 1 cut(s) | 204 |
| PspOMI | GGGCCC | 1 cut(s) | 202 |
| PspPI | GGNCC | 2 cut(s) | 202, 203 |
| PvuII | CAGCTG | 1 cut(s) | 158 |
| RseI | CAYNNNNRTG | 2 cut(s) | 170, 309 |
| SacI | GAGCTC | 1 cut(s) | 573 |
| SapI | GCTCTTC | 1 cut(s) | 344 |
| SaqAI | TTAA | 2 cut(s) | 63, 260 |
| SatI | GCNGC | 2 cut(s) | 273, 335 |
| Sau96I | GGNCC | 2 cut(s) | 202, 203 |
| SduI | GDGCHC | 3 cut(s) | 206, 555, 573 |
| SfaNI | GCATC | 2 cut(s) | 139, 466 |
| SfcI | CTRYAG | 1 cut(s) | 153 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 170, 309 |
| Sse9I | AATT | 5 cut(s) | 50, 64, 209, 438, 540 |
| SsiI | CCGC | 1 cut(s) | 335 |
| SspMI | CTAG | 3 cut(s) | 245, 497, 522 |
| SstI | GAGCTC | 1 cut(s) | 573 |
| StyI | CCWWGG | 1 cut(s) | 276 |
| TaaI | ACNGT | 3 cut(s) | 142, 591, 633 |
| TaiI | ACGT | 2 cut(s) | 309, 552 |
| TasI | AATT | 5 cut(s) | 50, 64, 209, 438, 540 |
| TauI | GCSGC | 1 cut(s) | 337 |
| TfiI | GAWTC | 1 cut(s) | 393 |
| Tru1I | TTAA | 2 cut(s) | 63, 260 |
| Tru9I | TTAA | 2 cut(s) | 63, 260 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 1 cut(s) | 272 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 3 cut(s) | 154, 252, 282 |
| TspRI | CASTG | 1 cut(s) | 81 |
| XapI | RAATTY | 1 cut(s) | 209 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 213 |
| XmnI | GAANNNNTTC | 1 cut(s) | 392 |
| XspI | CTAG | 3 cut(s) | 245, 497, 522 |