ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 924, 1024 |
| AcvI | CACGTG | 1 cut(s) | 954 |
| AfaI | GTAC | 1 cut(s) | 544 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 29, 97, 178, 179 |
| AflIII | ACRYGT | 1 cut(s) | 951 |
| AjnI | CCWGG | 2 cut(s) | 22, 54 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 240, 272 |
| AleI | CACNNNNGTG | 1 cut(s) | 715 |
| AluBI | AGCT | 6 cut(s) | 572, 821, 1000, 1006, 1012, 1090 |
| AluI | AGCT | 6 cut(s) | 572, 821, 1000, 1006, 1012, 1090 |
| Alw21I | GWGCWC | 2 cut(s) | 738, 938 |
| Alw26I | GTCTC | 3 cut(s) | 450, 670, 732 |
| Alw44I | GTGCAC | 2 cut(s) | 734, 934 |
| ApaLI | GTGCAC | 2 cut(s) | 734, 934 |
| ApeKI | GCWGC | 2 cut(s) | 122, 241 |
| ApoI | RAATTY | 2 cut(s) | 924, 1024 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 924 |
| AspS9I | GGNCC | 3 cut(s) | 349, 682, 720 |
| AsuC2I | CCSGG | 1 cut(s) | 686 |
| AsuHPI | GGTGA | 2 cut(s) | 272, 289 |
| AvaII | GGWCC | 3 cut(s) | 349, 682, 720 |
| BaeGI | GKGCMC | 2 cut(s) | 738, 938 |
| BbrPI | CACGTG | 1 cut(s) | 954 |
| Bbv12I | GWGCWC | 2 cut(s) | 738, 938 |
| BbvI | GCAGC | 2 cut(s) | 134, 228 |
| BccI | CCATC | 3 cut(s) | 211, 382, 893 |
| BceAI | ACGGC | 1 cut(s) | 266 |
| BciT130I | CCWGG | 2 cut(s) | 24, 56 |
| BciVI | GTATCC | 1 cut(s) | 492 |
| BcnI | CCSGG | 1 cut(s) | 686 |
| BcoDI | GTCTC | 3 cut(s) | 450, 670, 732 |
| BfaI | CTAG | 4 cut(s) | 69, 822, 1074, 1094 |
| BfuI | GTATCC | 1 cut(s) | 492 |
| BisI | GCNGC | 2 cut(s) | 123, 242 |
| BlsI | GCNGC | 2 cut(s) | 124, 243 |
| Bme1390I | CCNGG | 3 cut(s) | 24, 56, 686 |
| Bme18I | GGWCC | 3 cut(s) | 349, 682, 720 |
| BmgT120I | GGNCC | 3 cut(s) | 349, 682, 720 |
| BmiI | GGNNCC | 2 cut(s) | 64, 350 |
| BmrFI | CCNGG | 3 cut(s) | 24, 56, 686 |
| BpmI | CTGGAG | 1 cut(s) | 1028 |
| BpuMI | CCSGG | 1 cut(s) | 686 |
| Bsa29I | ATCGAT | 1 cut(s) | 550 |
| BsaAI | YACGTR | 2 cut(s) | 636, 954 |
| BsaJI | CCNNGG | 4 cut(s) | 54, 417, 485, 685 |
| BsaWI | WCCGGW | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 631, 661 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 29, 97, 178, 179 |
| Bse1I | ACTGG | 2 cut(s) | 684, 706 |
| Bse3DI | GCAATG | 3 cut(s) | 217, 788, 901 |
| BseBI | CCWGG | 2 cut(s) | 24, 56 |
| BseCI | ATCGAT | 1 cut(s) | 550 |
| BseDI | CCNNGG | 4 cut(s) | 54, 417, 485, 685 |
| BseGI | GGATG | 2 cut(s) | 595, 855 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 29, 97, 178, 179 |
| BseMI | GCAATG | 3 cut(s) | 217, 788, 901 |
| BseMII | CTCAG | 1 cut(s) | 66 |
| BseNI | ACTGG | 2 cut(s) | 684, 706 |
| BseSI | GKGCMC | 2 cut(s) | 738, 938 |
| BseXI | GCAGC | 2 cut(s) | 134, 228 |
| BsgI | GTGCAG | 1 cut(s) | 161 |
| BshVI | ATCGAT | 1 cut(s) | 550 |
| BsiHKAI | GWGCWC | 2 cut(s) | 738, 938 |
| BsiSI | CCGG | 2 cut(s) | 155, 685 |
| BslFI | GGGAC | 3 cut(s) | 37, 51, 362 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 29, 97, 178, 179 |
| BsmAI | GTCTC | 3 cut(s) | 450, 670, 732 |
| BsmFI | GGGAC | 3 cut(s) | 37, 51, 362 |
| BsmI | GAATGC | 1 cut(s) | 788 |
| Bsp1286I | GDGCHC | 2 cut(s) | 738, 938 |
| Bsp143I | GATC | 3 cut(s) | 426, 551, 1124 |
| BspCNI | CTCAG | 1 cut(s) | 67 |
| BspDI | ATCGAT | 1 cut(s) | 550 |
| BspLI | GGNNCC | 2 cut(s) | 64, 350 |
| BsrDI | GCAATG | 3 cut(s) | 217, 788, 901 |
| BsrI | ACTGG | 2 cut(s) | 684, 706 |
| BssECI | CCNNGG | 4 cut(s) | 54, 417, 485, 685 |
| BssMI | GATC | 3 cut(s) | 426, 551, 1124 |
| BssT1I | CCWWGG | 2 cut(s) | 417, 485 |
| Bst2UI | CCWGG | 2 cut(s) | 24, 56 |
| Bst4CI | ACNGT | 3 cut(s) | 296, 714, 754 |
| Bst6I | CTCTTC | 7 cut(s) | 125, 330, 362, 431, 637, 852, 864 |
| BstBAI | YACGTR | 2 cut(s) | 636, 954 |
| BstDEI | CTNAG | 2 cut(s) | 75, 1142 |
| BstF5I | GGATG | 2 cut(s) | 595, 855 |
| BstKTI | GATC | 3 cut(s) | 429, 554, 1127 |
| BstMAI | GTCTC | 3 cut(s) | 450, 670, 732 |
| BstMBI | GATC | 3 cut(s) | 426, 551, 1124 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 250, 606 |
| BstNI | CCWGG | 2 cut(s) | 24, 56 |
| BstSCI | CCNGG | 3 cut(s) | 22, 54, 684 |
| BstSLI | GKGCMC | 2 cut(s) | 738, 938 |
| BstV1I | GCAGC | 2 cut(s) | 134, 228 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 730 |
| Bsu15I | ATCGAT | 1 cut(s) | 550 |
| BsuI | GTATCC | 1 cut(s) | 492 |
| BsuTUI | ATCGAT | 1 cut(s) | 550 |
| BtsCI | GGATG | 2 cut(s) | 595, 855 |
| BtsIMutI | CAGTG | 3 cut(s) | 72, 912, 938 |
| Cfr13I | GGNCC | 3 cut(s) | 349, 682, 720 |
| ClaI | ATCGAT | 1 cut(s) | 550 |
| Csp6I | GTAC | 1 cut(s) | 543 |
| CviAII | CATG | 3 cut(s) | 496, 740, 1111 |
| CviQI | GTAC | 1 cut(s) | 543 |
| DdeI | CTNAG | 2 cut(s) | 75, 1142 |
| DpnI | GATC | 3 cut(s) | 428, 553, 1126 |
| DpnII | GATC | 3 cut(s) | 426, 551, 1124 |
| Eam1104I | CTCTTC | 7 cut(s) | 125, 330, 362, 431, 637, 852, 864 |
| EarI | CTCTTC | 7 cut(s) | 125, 330, 362, 431, 637, 852, 864 |
| Eco130I | CCWWGG | 2 cut(s) | 417, 485 |
| Eco47I | GGWCC | 3 cut(s) | 349, 682, 720 |
| Eco72I | CACGTG | 1 cut(s) | 954 |
| EcoRI | GAATTC | 2 cut(s) | 924, 1024 |
| EcoRII | CCWGG | 2 cut(s) | 22, 54 |
| EcoT14I | CCWWGG | 2 cut(s) | 417, 485 |
| ErhI | CCWWGG | 2 cut(s) | 417, 485 |
| FaeI | CATG | 3 cut(s) | 499, 743, 1114 |
| FaqI | GGGAC | 3 cut(s) | 37, 51, 362 |
| FatI | CATG | 3 cut(s) | 495, 739, 1110 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 242 |
| FokI | GGATG | 2 cut(s) | 602, 862 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 242 |
| FspBI | CTAG | 4 cut(s) | 69, 822, 1074, 1094 |
| GluI | GCNGC | 2 cut(s) | 123, 242 |
| GsuI | CTGGAG | 1 cut(s) | 1028 |
| HapII | CCGG | 2 cut(s) | 155, 685 |
| Hin1II | CATG | 3 cut(s) | 499, 743, 1114 |
| HindIII | AAGCTT | 1 cut(s) | 570 |
| HpaII | CCGG | 2 cut(s) | 155, 685 |
| HphI | GGTGA | 2 cut(s) | 272, 289 |
| Hpy166II | GTNNAC | 2 cut(s) | 736, 936 |
| Hpy188I | TCNGA | 3 cut(s) | 426, 760, 1145 |
| Hpy188III | TCNNGA | 3 cut(s) | 800, 1074, 1128 |
| Hpy8I | GTNNAC | 2 cut(s) | 736, 936 |
| HpyAV | CCTTC | 4 cut(s) | 28, 53, 647, 847 |
| HpyCH4III | ACNGT | 3 cut(s) | 296, 714, 754 |
| HpyCH4IV | ACGT | 2 cut(s) | 635, 953 |
| HpyCH4V | TGCA | 6 cut(s) | 142, 244, 495, 710, 736, 936 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 250, 606 |
| HpyF3I | CTNAG | 2 cut(s) | 75, 1142 |
| HpySE526I | ACGT | 2 cut(s) | 635, 953 |
| Hsp92II | CATG | 3 cut(s) | 499, 743, 1114 |
| Kzo9I | GATC | 3 cut(s) | 426, 551, 1124 |
| LmnI | GCTCC | 2 cut(s) | 818, 1009 |
| Lsp1109I | GCAGC | 2 cut(s) | 134, 228 |
| MaeI | CTAG | 4 cut(s) | 69, 822, 1074, 1094 |
| MaeII | ACGT | 2 cut(s) | 635, 953 |
| MalI | GATC | 3 cut(s) | 428, 553, 1126 |
| MboI | GATC | 3 cut(s) | 426, 551, 1124 |
| MhlI | GDGCHC | 2 cut(s) | 738, 938 |
| MluCI | AATT | 9 cut(s) | 198, 288, 512, 912, 924, 982, 1024, 1029, 1079 |
| MmeI | TCCRAC | 4 cut(s) | 69, 344, 567, 759 |
| MnlI | CCTC | 9 cut(s) | 76, 338, 432, 442, 520, 638, 796, 865, 1110 |
| MroXI | GAANNNNTTC | 1 cut(s) | 924 |
| MseI | TTAA | 3 cut(s) | 201, 507, 795 |
| MslI | CAYNNNNRTG | 2 cut(s) | 191, 715 |
| MspI | CCGG | 2 cut(s) | 155, 685 |
| MspR9I | CCNGG | 3 cut(s) | 24, 56, 686 |
| Mva1269I | GAATGC | 1 cut(s) | 788 |
| MvaI | CCWGG | 2 cut(s) | 24, 56 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 250, 606 |
| NciI | CCSGG | 1 cut(s) | 686 |
| NdeII | GATC | 3 cut(s) | 426, 551, 1124 |
| NlaIII | CATG | 3 cut(s) | 499, 743, 1114 |
| NlaIV | GGNNCC | 2 cut(s) | 64, 350 |
| OliI | CACNNNNGTG | 1 cut(s) | 715 |
| PctI | GAATGC | 1 cut(s) | 788 |
| PdmI | GAANNNNTTC | 1 cut(s) | 924 |
| PkrI | GCNGC | 2 cut(s) | 124, 243 |
| PmaCI | CACGTG | 1 cut(s) | 954 |
| PmlI | CACGTG | 1 cut(s) | 954 |
| Ppu21I | YACGTR | 2 cut(s) | 636, 954 |
| Psp6I | CCWGG | 2 cut(s) | 22, 54 |
| PspCI | CACGTG | 1 cut(s) | 954 |
| PspGI | CCWGG | 2 cut(s) | 22, 54 |
| PspN4I | GGNNCC | 2 cut(s) | 64, 350 |
| PspPI | GGNCC | 3 cut(s) | 349, 682, 720 |
| RsaI | GTAC | 1 cut(s) | 544 |
| RsaNI | GTAC | 1 cut(s) | 543 |
| RseI | CAYNNNNRTG | 2 cut(s) | 191, 715 |
| SaqAI | TTAA | 3 cut(s) | 201, 507, 795 |
| SatI | GCNGC | 2 cut(s) | 123, 242 |
| Sau3AI | GATC | 3 cut(s) | 426, 551, 1124 |
| Sau96I | GGNCC | 3 cut(s) | 349, 682, 720 |
| ScrFI | CCNGG | 3 cut(s) | 24, 56, 686 |
| SduI | GDGCHC | 2 cut(s) | 738, 938 |
| SinI | GGWCC | 3 cut(s) | 349, 682, 720 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 191, 715 |
| Sse9I | AATT | 9 cut(s) | 198, 288, 512, 912, 924, 982, 1024, 1029, 1079 |
| SspI | AATATT | 1 cut(s) | 313 |
| SspMI | CTAG | 4 cut(s) | 69, 822, 1074, 1094 |
| StyD4I | CCNGG | 3 cut(s) | 22, 54, 684 |
| StyI | CCWWGG | 2 cut(s) | 417, 485 |
| TaaI | ACNGT | 3 cut(s) | 296, 714, 754 |
| TaiI | ACGT | 2 cut(s) | 638, 956 |
| TaqI | TCGA | 4 cut(s) | 396, 521, 550, 799 |
| TasI | AATT | 9 cut(s) | 198, 288, 512, 912, 924, 982, 1024, 1029, 1079 |
| TatI | WGTACW | 1 cut(s) | 542 |
| Tru1I | TTAA | 3 cut(s) | 201, 507, 795 |
| Tru9I | TTAA | 3 cut(s) | 201, 507, 795 |
| TscAI | CASTG | 3 cut(s) | 79, 912, 938 |
| TseI | GCWGC | 2 cut(s) | 122, 241 |
| TspDTI | ATGAA | 7 cut(s) | 449, 525, 710, 821, 866, 1002, 1004 |
| TspRI | CASTG | 3 cut(s) | 79, 912, 938 |
| VneI | GTGCAC | 2 cut(s) | 734, 934 |
| VpaK11BI | GGWCC | 3 cut(s) | 349, 682, 720 |
| XapI | RAATTY | 2 cut(s) | 924, 1024 |
| XbaI | TCTAGA | 1 cut(s) | 1073 |
| XmnI | GAANNNNTTC | 1 cut(s) | 924 |
| XspI | CTAG | 4 cut(s) | 69, 822, 1074, 1094 |