ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 199 - 317 | 6.2e-08 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 401 |
| AccII | CGCG | 2 cut(s) | 204, 316 |
| AciI | CCGC | 5 cut(s) | 47, 180, 204, 566, 686 |
| AclWI | GGATC | 4 cut(s) | 167, 177, 190, 252 |
| AcsI | RAATTY | 2 cut(s) | 765, 1198 |
| AcuI | CTGAAG | 1 cut(s) | 927 |
| AfaI | GTAC | 1 cut(s) | 923 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 272, 413, 414, 808 |
| AflIII | ACRYGT | 1 cut(s) | 1081 |
| AgsI | TTSAA | 2 cut(s) | 223, 1270 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 69, 101, 221, 253, 1126, 1158 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 279, 311 |
| AluBI | AGCT | 6 cut(s) | 366, 875, 1015, 1088, 1224, 1237 |
| AluI | AGCT | 6 cut(s) | 366, 875, 1015, 1088, 1224, 1237 |
| Alw21I | GWGCWC | 1 cut(s) | 1109 |
| AlwI | GGATC | 4 cut(s) | 167, 177, 190, 252 |
| AoxI | GGCC | 3 cut(s) | 553, 823, 937 |
| ApaI | GGGCCC | 1 cut(s) | 827 |
| ApoI | RAATTY | 2 cut(s) | 765, 1198 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1199, 1231 |
| AspLEI | GCGC | 1 cut(s) | 318 |
| AspS9I | GGNCC | 6 cut(s) | 391, 553, 823, 824, 938, 1207 |
| AsuC2I | CCSGG | 2 cut(s) | 177, 772 |
| AsuHPI | GGTGA | 1 cut(s) | 1072 |
| AsuNHI | GCTAGC | 1 cut(s) | 43 |
| AvaII | GGWCC | 2 cut(s) | 391, 1207 |
| BaeGI | GKGCMC | 3 cut(s) | 763, 827, 1173 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 336, 369 |
| BamHI | GGATCC | 1 cut(s) | 182 |
| BanII | GRGCYC | 1 cut(s) | 827 |
| BauI | CACGAG | 1 cut(s) | 643 |
| BbsI | GAAGAC | 1 cut(s) | 492 |
| Bbv12I | GWGCWC | 1 cut(s) | 1109 |
| BccI | CCATC | 5 cut(s) | 5, 74, 161, 326, 1070 |
| BceAI | ACGGC | 1 cut(s) | 952 |
| BciVI | GTATCC | 1 cut(s) | 337 |
| BcnI | CCSGG | 2 cut(s) | 177, 772 |
| BfaI | CTAG | 2 cut(s) | 44, 803 |
| BfmI | CTRYAG | 1 cut(s) | 322 |
| BfuI | GTATCC | 1 cut(s) | 337 |
| Bme1390I | CCNGG | 2 cut(s) | 177, 772 |
| Bme18I | GGWCC | 2 cut(s) | 391, 1207 |
| BmgT120I | GGNCC | 6 cut(s) | 391, 553, 823, 824, 938, 1207 |
| BmiI | GGNNCC | 4 cut(s) | 184, 392, 825, 1208 |
| BmrFI | CCNGG | 2 cut(s) | 177, 772 |
| BmsI | GCATC | 4 cut(s) | 10, 250, 553, 772 |
| BmtI | GCTAGC | 1 cut(s) | 47 |
| BpiI | GAAGAC | 1 cut(s) | 492 |
| BpmI | CTGGAG | 1 cut(s) | 679 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1035 |
| BpuMI | CCSGG | 2 cut(s) | 177, 772 |
| BsaBI | GATNNNNATC | 1 cut(s) | 171 |
| BsaWI | WCCGGW | 1 cut(s) | 31 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 272, 413, 414, 808 |
| Bse1I | ACTGG | 2 cut(s) | 69, 726 |
| Bse8I | GATNNNNATC | 1 cut(s) | 171 |
| BseGI | GGATG | 3 cut(s) | 25, 1081, 1263 |
| BseJI | GATNNNNATC | 1 cut(s) | 171 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 272, 413, 414, 808 |
| BseMII | CTCAG | 4 cut(s) | 206, 563, 806, 864 |
| BseNI | ACTGG | 2 cut(s) | 69, 726 |
| BseRI | GAGGAG | 3 cut(s) | 821, 995, 1055 |
| BseSI | GKGCMC | 3 cut(s) | 763, 827, 1173 |
| BseYI | CCCAGC | 1 cut(s) | 1237 |
| Bsh1236I | CGCG | 2 cut(s) | 204, 316 |
| BshFI | GGCC | 3 cut(s) | 555, 825, 939 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1109 |
| BsiSI | CCGG | 3 cut(s) | 32, 176, 772 |
| BslFI | GGGAC | 2 cut(s) | 716, 1220 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 272, 413, 414, 808 |
| BsmFI | GGGAC | 2 cut(s) | 716, 1220 |
| BsmI | GAATGC | 2 cut(s) | 544, 1140 |
| BsnI | GGCC | 3 cut(s) | 555, 825, 939 |
| Bsp120I | GGGCCC | 1 cut(s) | 823 |
| Bsp1286I | GDGCHC | 4 cut(s) | 763, 827, 1109, 1173 |
| Bsp143I | GATC | 4 cut(s) | 172, 182, 244, 946 |
| BspACI | CCGC | 5 cut(s) | 47, 180, 204, 566, 686 |
| BspANI | GGCC | 3 cut(s) | 555, 825, 939 |
| BspCNI | CTCAG | 4 cut(s) | 207, 562, 805, 863 |
| BspFNI | CGCG | 2 cut(s) | 204, 316 |
| BspHI | TCATGA | 1 cut(s) | 298 |
| BspLI | GGNNCC | 4 cut(s) | 184, 392, 825, 1208 |
| BspOI | GCTAGC | 1 cut(s) | 47 |
| BspPI | GGATC | 4 cut(s) | 167, 177, 190, 252 |
| BspQI | GCTCTTC | 1 cut(s) | 475 |
| BsrI | ACTGG | 2 cut(s) | 69, 726 |
| BssMI | GATC | 4 cut(s) | 172, 182, 244, 946 |
| BssSI | CACGAG | 1 cut(s) | 643 |
| Bst2BI | CACGAG | 1 cut(s) | 643 |
| Bst6I | CTCTTC | 2 cut(s) | 470, 475 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 491 |
| BstC8I | GCNNGC | 2 cut(s) | 45, 1226 |
| BstDEI | CTNAG | 6 cut(s) | 215, 549, 792, 850, 1035, 1110 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 806 |
| BstF5I | GGATG | 3 cut(s) | 25, 1081, 1263 |
| BstFNI | CGCG | 2 cut(s) | 204, 316 |
| BstHHI | GCGC | 1 cut(s) | 318 |
| BstKTI | GATC | 4 cut(s) | 175, 185, 247, 949 |
| BstMBI | GATC | 4 cut(s) | 172, 182, 244, 946 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 491, 1234 |
| BstNSI | RCATGY | 3 cut(s) | 920, 1058, 1085 |
| BstSCI | CCNGG | 2 cut(s) | 175, 770 |
| BstSFI | CTRYAG | 1 cut(s) | 322 |
| BstSLI | GKGCMC | 3 cut(s) | 763, 827, 1173 |
| BstUI | CGCG | 2 cut(s) | 204, 316 |
| BstV2I | GAAGAC | 1 cut(s) | 492 |
| BstX2I | RGATCY | 3 cut(s) | 172, 182, 244 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 540 |
| BstYI | RGATCY | 3 cut(s) | 172, 182, 244 |
| BsuI | GTATCC | 1 cut(s) | 337 |
| BsuRI | GGCC | 3 cut(s) | 555, 825, 939 |
| BtsCI | GGATG | 3 cut(s) | 25, 1081, 1263 |
| BtsIMutI | CAGTG | 4 cut(s) | 681, 733, 800, 858 |
| Cac8I | GCNNGC | 2 cut(s) | 45, 1226 |
| CciI | TCATGA | 1 cut(s) | 298 |
| CfoI | GCGC | 1 cut(s) | 318 |
| Cfr13I | GGNCC | 6 cut(s) | 391, 553, 823, 824, 938, 1207 |
| CseI | GACGC | 1 cut(s) | 1011 |
| Csp6I | GTAC | 1 cut(s) | 922 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 367, 402 |
| CviAII | CATG | 9 cut(s) | 293, 299, 540, 917, 926, 1055, 1082, 1126, 1139 |
| CviQI | GTAC | 1 cut(s) | 922 |
| DdeI | CTNAG | 6 cut(s) | 215, 549, 792, 850, 1035, 1110 |
| DpnI | GATC | 4 cut(s) | 174, 184, 246, 948 |
| DpnII | GATC | 4 cut(s) | 172, 182, 244, 946 |
| Eam1104I | CTCTTC | 2 cut(s) | 470, 475 |
| EarI | CTCTTC | 2 cut(s) | 470, 475 |
| EciI | GGCGGA | 1 cut(s) | 195 |
| Eco24I | GRGCYC | 1 cut(s) | 827 |
| Eco47I | GGWCC | 2 cut(s) | 391, 1207 |
| Eco57I | CTGAAG | 1 cut(s) | 927 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 806 |
| EcoO109I | RGGNCCY | 2 cut(s) | 823, 1207 |
| EcoT22I | ATGCAT | 1 cut(s) | 1140 |
| EcoT38I | GRGCYC | 1 cut(s) | 827 |
| FaeI | CATG | 9 cut(s) | 296, 302, 543, 920, 929, 1058, 1085, 1129, 1142 |
| FaqI | GGGAC | 2 cut(s) | 716, 1220 |
| FatI | CATG | 9 cut(s) | 292, 298, 539, 916, 925, 1054, 1081, 1125, 1138 |
| FauI | CCCGC | 1 cut(s) | 197 |
| FblI | GTMKAC | 1 cut(s) | 401 |
| FokI | GGATG | 3 cut(s) | 32, 1088, 1270 |
| FriOI | GRGCYC | 1 cut(s) | 827 |
| FspBI | CTAG | 2 cut(s) | 44, 803 |
| GlaI | GCGC | 1 cut(s) | 317 |
| GsaI | CCCAGC | 1 cut(s) | 1241 |
| GsuI | CTGGAG | 1 cut(s) | 679 |
| HaeIII | GGCC | 3 cut(s) | 555, 825, 939 |
| HapII | CCGG | 3 cut(s) | 32, 176, 772 |
| HgaI | GACGC | 1 cut(s) | 1011 |
| HhaI | GCGC | 1 cut(s) | 318 |
| Hin1II | CATG | 9 cut(s) | 296, 302, 543, 920, 929, 1058, 1085, 1129, 1142 |
| Hin6I | GCGC | 1 cut(s) | 316 |
| HinP1I | GCGC | 1 cut(s) | 316 |
| HindIII | AAGCTT | 1 cut(s) | 1013 |
| HinfI | GANTC | 5 cut(s) | 50, 143, 199, 288, 506 |
| HpaII | CCGG | 3 cut(s) | 32, 176, 772 |
| HphI | GGTGA | 1 cut(s) | 1072 |
| Hpy166II | GTNNAC | 5 cut(s) | 376, 402, 834, 922, 1001 |
| Hpy188I | TCNGA | 4 cut(s) | 216, 505, 946, 1234 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 299, 658, 1255, 1267 |
| Hpy8I | GTNNAC | 5 cut(s) | 376, 402, 834, 922, 1001 |
| Hpy99I | CGWCG | 1 cut(s) | 1286 |
| HpyAV | CCTTC | 4 cut(s) | 185, 951, 1057, 1170 |
| HpyCH4IV | ACGT | 4 cut(s) | 634, 862, 1167, 1281 |
| HpyCH4V | TGCA | 6 cut(s) | 539, 916, 1125, 1138, 1228, 1278 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 491, 1234 |
| HpyF3I | CTNAG | 6 cut(s) | 215, 549, 792, 850, 1035, 1110 |
| HpySE526I | ACGT | 4 cut(s) | 634, 862, 1167, 1281 |
| Hsp92II | CATG | 9 cut(s) | 296, 302, 543, 920, 929, 1058, 1085, 1129, 1142 |
| HspAI | GCGC | 1 cut(s) | 316 |
| Kzo9I | GATC | 4 cut(s) | 172, 182, 244, 946 |
| LguI | GCTCTTC | 1 cut(s) | 475 |
| LmnI | GCTCC | 1 cut(s) | 255 |
| LweI | GCATC | 4 cut(s) | 10, 250, 553, 772 |
| MaeI | CTAG | 2 cut(s) | 44, 803 |
| MaeII | ACGT | 4 cut(s) | 634, 862, 1167, 1281 |
| MaeIII | GTNAC | 2 cut(s) | 651, 797 |
| MalI | GATC | 4 cut(s) | 174, 184, 246, 948 |
| MboI | GATC | 4 cut(s) | 172, 182, 244, 946 |
| MboII | GAAGA | 5 cut(s) | 89, 487, 492, 492, 944 |
| MfeI | CAATTG | 2 cut(s) | 236, 395 |
| MflI | RGATCY | 3 cut(s) | 172, 182, 244 |
| MhlI | GDGCHC | 4 cut(s) | 763, 827, 1109, 1173 |
| Mph1103I | ATGCAT | 1 cut(s) | 1140 |
| MseI | TTAA | 9 cut(s) | 119, 131, 278, 708, 719, 906, 1115, 1182, 1190 |
| MslI | CAYNNNNRTG | 4 cut(s) | 297, 561, 930, 1256 |
| MspA1I | CMGCKG | 1 cut(s) | 688 |
| MspI | CCGG | 3 cut(s) | 32, 176, 772 |
| MspR9I | CCNGG | 2 cut(s) | 177, 772 |
| MunI | CAATTG | 2 cut(s) | 236, 395 |
| Mva1269I | GAATGC | 2 cut(s) | 544, 1140 |
| MvnI | CGCG | 2 cut(s) | 204, 316 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 491, 1234 |
| NciI | CCSGG | 2 cut(s) | 177, 772 |
| NdeII | GATC | 4 cut(s) | 172, 182, 244, 946 |
| NheI | GCTAGC | 1 cut(s) | 43 |
| NlaIII | CATG | 9 cut(s) | 296, 302, 543, 920, 929, 1058, 1085, 1129, 1142 |
| NlaIV | GGNNCC | 4 cut(s) | 184, 392, 825, 1208 |
| NsiI | ATGCAT | 1 cut(s) | 1140 |
| NspI | RCATGY | 3 cut(s) | 920, 1058, 1085 |
| PagI | TCATGA | 1 cut(s) | 298 |
| PciI | ACATGT | 1 cut(s) | 1081 |
| PciSI | GCTCTTC | 1 cut(s) | 475 |
| PctI | GAATGC | 2 cut(s) | 544, 1140 |
| PfeI | GAWTC | 5 cut(s) | 50, 143, 199, 288, 506 |
| PpuMI | RGGWCCY | 1 cut(s) | 1207 |
| PscI | ACATGT | 1 cut(s) | 1081 |
| Psp5II | RGGWCCY | 1 cut(s) | 1207 |
| PspFI | CCCAGC | 1 cut(s) | 1237 |
| PspN4I | GGNNCC | 4 cut(s) | 184, 392, 825, 1208 |
| PspOMI | GGGCCC | 1 cut(s) | 823 |
| PspPI | GGNCC | 6 cut(s) | 391, 553, 823, 824, 938, 1207 |
| PspPPI | RGGWCCY | 1 cut(s) | 1207 |
| PsuI | RGATCY | 3 cut(s) | 172, 182, 244 |
| RsaI | GTAC | 1 cut(s) | 923 |
| RsaNI | GTAC | 1 cut(s) | 922 |
| RseI | CAYNNNNRTG | 4 cut(s) | 297, 561, 930, 1256 |
| SapI | GCTCTTC | 1 cut(s) | 475 |
| SaqAI | TTAA | 9 cut(s) | 119, 131, 278, 708, 719, 906, 1115, 1182, 1190 |
| Sau3AI | GATC | 4 cut(s) | 172, 182, 244, 946 |
| Sau96I | GGNCC | 6 cut(s) | 391, 553, 823, 824, 938, 1207 |
| ScrFI | CCNGG | 2 cut(s) | 177, 772 |
| SduI | GDGCHC | 4 cut(s) | 763, 827, 1109, 1173 |
| SfaNI | GCATC | 4 cut(s) | 10, 250, 553, 772 |
| SfcI | CTRYAG | 1 cut(s) | 322 |
| SinI | GGWCC | 2 cut(s) | 391, 1207 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 297, 561, 930, 1256 |
| SsiI | CCGC | 5 cut(s) | 47, 180, 204, 566, 686 |
| SspI | AATATT | 1 cut(s) | 717 |
| SspMI | CTAG | 2 cut(s) | 44, 803 |
| StyD4I | CCNGG | 2 cut(s) | 175, 770 |
| TaiI | ACGT | 4 cut(s) | 637, 865, 1170, 1284 |
| TaqI | TCGA | 1 cut(s) | 448 |
| TfiI | GAWTC | 5 cut(s) | 50, 143, 199, 288, 506 |
| Tru1I | TTAA | 9 cut(s) | 119, 131, 278, 708, 719, 906, 1115, 1182, 1190 |
| Tru9I | TTAA | 9 cut(s) | 119, 131, 278, 708, 719, 906, 1115, 1182, 1190 |
| TscAI | CASTG | 4 cut(s) | 681, 733, 800, 858 |
| TspDTI | ATGAA | 3 cut(s) | 287, 726, 952 |
| TspRI | CASTG | 4 cut(s) | 681, 733, 800, 858 |
| VpaK11BI | GGWCC | 2 cut(s) | 391, 1207 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 806 |
| XapI | RAATTY | 2 cut(s) | 765, 1198 |
| XceI | RCATGY | 3 cut(s) | 920, 1058, 1085 |
| XmiI | GTMKAC | 1 cut(s) | 401 |
| XspI | CTAG | 2 cut(s) | 44, 803 |
| Zsp2I | ATGCAT | 1 cut(s) | 1140 |