ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 806 |
| AccI | GTMKAC | 1 cut(s) | 882 |
| AccIII | TCCGGA | 1 cut(s) | 130 |
| AclI | AACGTT | 1 cut(s) | 1036 |
| AclWI | GGATC | 4 cut(s) | 141, 550, 806, 819 |
| AcsI | RAATTY | 1 cut(s) | 946 |
| AcuI | CTGAAG | 1 cut(s) | 243 |
| AfaI | GTAC | 1 cut(s) | 769 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 193, 806 |
| AgsI | TTSAA | 8 cut(s) | 13, 152, 427, 782, 841, 917, 997, 1049 |
| AhlI | ACTAGT | 1 cut(s) | 1081 |
| AjnI | CCWGG | 2 cut(s) | 1040, 1065 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1021, 1053 |
| AluBI | AGCT | 3 cut(s) | 215, 386, 980 |
| AluI | AGCT | 3 cut(s) | 215, 386, 980 |
| Alw21I | GWGCWC | 1 cut(s) | 982 |
| Alw26I | GTCTC | 3 cut(s) | 574, 609, 886 |
| AlwI | GGATC | 4 cut(s) | 141, 550, 806, 819 |
| Ama87I | CYCGRG | 1 cut(s) | 633 |
| Aor13HI | TCCGGA | 1 cut(s) | 130 |
| AoxI | GGCC | 4 cut(s) | 37, 208, 591, 1063 |
| ApoI | RAATTY | 1 cut(s) | 946 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 82, 114 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 256 |
| AspLEI | GCGC | 1 cut(s) | 228 |
| AspS9I | GGNCC | 5 cut(s) | 37, 241, 461, 591, 1071 |
| AsuHPI | GGTGA | 2 cut(s) | 634, 700 |
| AsuII | TTCGAA | 1 cut(s) | 1104 |
| AvaI | CYCGRG | 1 cut(s) | 633 |
| AvaII | GGWCC | 3 cut(s) | 241, 461, 1071 |
| AxyI | CCTNAGG | 2 cut(s) | 189, 723 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BamHI | GGATCC | 1 cut(s) | 811 |
| BanII | GRGCYC | 1 cut(s) | 982 |
| Bbv12I | GWGCWC | 1 cut(s) | 982 |
| BbvCI | CCTCAGC | 1 cut(s) | 279 |
| BccI | CCATC | 2 cut(s) | 164, 405 |
| BciT130I | CCWGG | 2 cut(s) | 1042, 1067 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcoDI | GTCTC | 3 cut(s) | 574, 609, 886 |
| BcuI | ACTAGT | 1 cut(s) | 1081 |
| BfaI | CTAG | 3 cut(s) | 96, 212, 1082 |
| BfmI | CTRYAG | 2 cut(s) | 31, 342 |
| BglII | AGATCT | 1 cut(s) | 234 |
| Bme1390I | CCNGG | 2 cut(s) | 1042, 1067 |
| Bme18I | GGWCC | 3 cut(s) | 241, 461, 1071 |
| BmeT110I | CYCGRG | 1 cut(s) | 633 |
| BmgT120I | GGNCC | 5 cut(s) | 37, 241, 461, 591, 1071 |
| BmiI | GGNNCC | 3 cut(s) | 38, 813, 1072 |
| BmrFI | CCNGG | 2 cut(s) | 1042, 1067 |
| BmsI | GCATC | 4 cut(s) | 52, 265, 783, 1104 |
| BpmI | CTGGAG | 1 cut(s) | 897 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| Bpu14I | TTCGAA | 1 cut(s) | 1104 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaAI | YACGTR | 1 cut(s) | 555 |
| BsaJI | CCNNGG | 2 cut(s) | 404, 1066 |
| BsaWI | WCCGGW | 1 cut(s) | 130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 734, 764 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 193, 806 |
| Bse118I | RCCGGY | 1 cut(s) | 416 |
| Bse21I | CCTNAGG | 2 cut(s) | 189, 723 |
| Bse3DI | GCAATG | 2 cut(s) | 235, 614 |
| BseAI | TCCGGA | 1 cut(s) | 130 |
| BseBI | CCWGG | 2 cut(s) | 1042, 1067 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 404, 1066 |
| BseGI | GGATG | 2 cut(s) | 202, 798 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 193, 806 |
| BseMI | GCAATG | 2 cut(s) | 235, 614 |
| BseMII | CTCAG | 3 cut(s) | 270, 404, 667 |
| BseRI | GAGGAG | 2 cut(s) | 362, 755 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BshFI | GGCC | 4 cut(s) | 39, 210, 593, 1065 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 982 |
| BsiHKCI | CYCGRG | 1 cut(s) | 633 |
| BsiSI | CCGG | 2 cut(s) | 131, 417 |
| BslFI | GGGAC | 4 cut(s) | 368, 379, 864, 1084 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 193, 806 |
| BsmAI | GTCTC | 3 cut(s) | 574, 609, 886 |
| BsmFI | GGGAC | 4 cut(s) | 368, 379, 864, 1084 |
| BsmI | GAATGC | 1 cut(s) | 871 |
| BsnI | GGCC | 4 cut(s) | 39, 210, 593, 1065 |
| BsoBI | CYCGRG | 1 cut(s) | 633 |
| Bsp119I | TTCGAA | 1 cut(s) | 1104 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 982 |
| Bsp13I | TCCGGA | 1 cut(s) | 130 |
| Bsp143I | GATC | 8 cut(s) | 133, 234, 522, 542, 586, 664, 681, 811 |
| BspANI | GGCC | 4 cut(s) | 39, 210, 593, 1065 |
| BspCNI | CTCAG | 3 cut(s) | 271, 403, 666 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspEI | TCCGGA | 1 cut(s) | 130 |
| BspLI | GGNNCC | 3 cut(s) | 38, 813, 1072 |
| BspPI | GGATC | 4 cut(s) | 141, 550, 806, 819 |
| BspT104I | TTCGAA | 1 cut(s) | 1104 |
| BsrDI | GCAATG | 2 cut(s) | 235, 614 |
| BsrFI | RCCGGY | 1 cut(s) | 416 |
| BssAI | RCCGGY | 1 cut(s) | 416 |
| BssECI | CCNNGG | 2 cut(s) | 404, 1066 |
| BssMI | GATC | 8 cut(s) | 133, 234, 522, 542, 586, 664, 681, 811 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst2UI | CCWGG | 2 cut(s) | 1042, 1067 |
| Bst4CI | ACNGT | 5 cut(s) | 32, 148, 604, 1075, 1125 |
| Bst6I | CTCTTC | 2 cut(s) | 224, 262 |
| BstBAI | YACGTR | 1 cut(s) | 555 |
| BstBI | TTCGAA | 1 cut(s) | 1104 |
| BstC8I | GCNNGC | 2 cut(s) | 418, 595 |
| BstDEI | CTNAG | 6 cut(s) | 189, 279, 390, 573, 653, 723 |
| BstF5I | GGATG | 2 cut(s) | 202, 798 |
| BstHHI | GCGC | 1 cut(s) | 228 |
| BstKTI | GATC | 8 cut(s) | 136, 237, 525, 545, 589, 667, 684, 814 |
| BstMAI | GTCTC | 3 cut(s) | 574, 609, 886 |
| BstMBI | GATC | 8 cut(s) | 133, 234, 522, 542, 586, 664, 681, 811 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 344 |
| BstNI | CCWGG | 2 cut(s) | 1042, 1067 |
| BstSCI | CCNGG | 2 cut(s) | 1040, 1065 |
| BstSFI | CTRYAG | 2 cut(s) | 31, 342 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstX2I | RGATCY | 3 cut(s) | 133, 234, 811 |
| BstYI | RGATCY | 3 cut(s) | 133, 234, 811 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| Bsu36I | CCTNAGG | 2 cut(s) | 189, 723 |
| BsuRI | GGCC | 4 cut(s) | 39, 210, 593, 1065 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtsCI | GGATG | 2 cut(s) | 202, 798 |
| BtsI | GCAGTG | 2 cut(s) | 503, 667 |
| BtsIMutI | CAGTG | 3 cut(s) | 503, 609, 667 |
| Cac8I | GCNNGC | 2 cut(s) | 418, 595 |
| CfoI | GCGC | 1 cut(s) | 228 |
| Cfr10I | RCCGGY | 1 cut(s) | 416 |
| Cfr13I | GGNCC | 5 cut(s) | 37, 241, 461, 591, 1071 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CpoI | CGGWCCG | 1 cut(s) | 241 |
| Csp6I | GTAC | 1 cut(s) | 768 |
| CspI | CGGWCCG | 1 cut(s) | 241 |
| CviAII | CATG | 3 cut(s) | 363, 443, 758 |
| CviQI | GTAC | 1 cut(s) | 768 |
| DdeI | CTNAG | 6 cut(s) | 189, 279, 390, 573, 653, 723 |
| DpnI | GATC | 8 cut(s) | 135, 236, 524, 544, 588, 666, 683, 813 |
| DpnII | GATC | 8 cut(s) | 133, 234, 522, 542, 586, 664, 681, 811 |
| Eam1104I | CTCTTC | 2 cut(s) | 224, 262 |
| EarI | CTCTTC | 2 cut(s) | 224, 262 |
| Ecl136II | GAGCTC | 1 cut(s) | 980 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco24I | GRGCYC | 1 cut(s) | 982 |
| Eco47I | GGWCC | 3 cut(s) | 241, 461, 1071 |
| Eco53kI | GAGCTC | 1 cut(s) | 980 |
| Eco57I | CTGAAG | 1 cut(s) | 243 |
| Eco81I | CCTNAGG | 2 cut(s) | 189, 723 |
| Eco88I | CYCGRG | 1 cut(s) | 633 |
| EcoICRI | GAGCTC | 1 cut(s) | 980 |
| EcoO109I | RGGNCCY | 2 cut(s) | 37, 461 |
| EcoRII | CCWGG | 2 cut(s) | 1040, 1065 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| EcoT22I | ATGCAT | 1 cut(s) | 1119 |
| EcoT38I | GRGCYC | 1 cut(s) | 982 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| FaeI | CATG | 3 cut(s) | 366, 446, 761 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 51, 83, 492, 524 |
| FaqI | GGGAC | 4 cut(s) | 368, 379, 864, 1084 |
| FatI | CATG | 3 cut(s) | 362, 442, 757 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| FblI | GTMKAC | 1 cut(s) | 882 |
| FokI | GGATG | 2 cut(s) | 209, 805 |
| FriOI | GRGCYC | 1 cut(s) | 982 |
| FspBI | CTAG | 3 cut(s) | 96, 212, 1082 |
| GlaI | GCGC | 1 cut(s) | 227 |
| GsuI | CTGGAG | 1 cut(s) | 897 |
| HaeIII | GGCC | 4 cut(s) | 39, 210, 593, 1065 |
| HapII | CCGG | 2 cut(s) | 131, 417 |
| HhaI | GCGC | 1 cut(s) | 228 |
| Hin1II | CATG | 3 cut(s) | 366, 446, 761 |
| Hin6I | GCGC | 1 cut(s) | 226 |
| HinP1I | GCGC | 1 cut(s) | 226 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HinfI | GANTC | 9 cut(s) | 306, 315, 349, 367, 691, 879, 913, 953, 1045 |
| HpaII | CCGG | 2 cut(s) | 131, 417 |
| HphI | GGTGA | 2 cut(s) | 634, 700 |
| Hpy166II | GTNNAC | 2 cut(s) | 141, 883 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 251, 377, 664 |
| Hpy188III | TCNNGA | 8 cut(s) | 131, 353, 456, 633, 679, 695, 862, 876 |
| Hpy8I | GTNNAC | 2 cut(s) | 141, 883 |
| Hpy99I | CGWCG | 1 cut(s) | 1099 |
| HpyAV | CCTTC | 1 cut(s) | 1055 |
| HpyCH4III | ACNGT | 5 cut(s) | 32, 148, 604, 1075, 1125 |
| HpyCH4IV | ACGT | 2 cut(s) | 554, 1036 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 302, 446, 607, 761, 1111, 1117 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 344 |
| HpyF3I | CTNAG | 6 cut(s) | 189, 279, 390, 573, 653, 723 |
| HpySE526I | ACGT | 2 cut(s) | 554, 1036 |
| Hsp92II | CATG | 3 cut(s) | 366, 446, 761 |
| HspAI | GCGC | 1 cut(s) | 226 |
| Kpn2I | TCCGGA | 1 cut(s) | 130 |
| KroI | GCCGGC | 1 cut(s) | 416 |
| KroNI | GCCGGC | 1 cut(s) | 418 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| Kzo9I | GATC | 8 cut(s) | 133, 234, 522, 542, 586, 664, 681, 811 |
| LmnI | GCTCC | 1 cut(s) | 801 |
| LweI | GCATC | 4 cut(s) | 52, 265, 783, 1104 |
| MaeI | CTAG | 3 cut(s) | 96, 212, 1082 |
| MaeII | ACGT | 2 cut(s) | 554, 1036 |
| MalI | GATC | 8 cut(s) | 135, 236, 524, 544, 588, 666, 683, 813 |
| MboI | GATC | 8 cut(s) | 133, 234, 522, 542, 586, 664, 681, 811 |
| MboII | GAAGA | 4 cut(s) | 97, 211, 249, 955 |
| MflI | RGATCY | 3 cut(s) | 133, 234, 811 |
| MhlI | GDGCHC | 2 cut(s) | 187, 982 |
| MluCI | AATT | 5 cut(s) | 562, 946, 986, 1001, 1106 |
| MlyI | GAGTC | 3 cut(s) | 315, 888, 962 |
| MmeI | TCCRAC | 2 cut(s) | 520, 770 |
| Mph1103I | ATGCAT | 1 cut(s) | 1119 |
| MroI | TCCGGA | 1 cut(s) | 130 |
| MroNI | GCCGGC | 1 cut(s) | 416 |
| MroXI | GAANNNNTTC | 1 cut(s) | 256 |
| MseI | TTAA | 3 cut(s) | 42, 1055, 1129 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspI | CCGG | 2 cut(s) | 131, 417 |
| MspR9I | CCNGG | 2 cut(s) | 1042, 1067 |
| Mva1269I | GAATGC | 1 cut(s) | 871 |
| MvaI | CCWGG | 2 cut(s) | 1042, 1067 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 344 |
| NaeI | GCCGGC | 1 cut(s) | 418 |
| NdeII | GATC | 8 cut(s) | 133, 234, 522, 542, 586, 664, 681, 811 |
| NgoMIV | GCCGGC | 1 cut(s) | 416 |
| NlaIII | CATG | 3 cut(s) | 366, 446, 761 |
| NlaIV | GGNNCC | 3 cut(s) | 38, 813, 1072 |
| NsiI | ATGCAT | 1 cut(s) | 1119 |
| NspV | TTCGAA | 1 cut(s) | 1104 |
| PctI | GAATGC | 1 cut(s) | 871 |
| PdiI | GCCGGC | 1 cut(s) | 418 |
| PdmI | GAANNNNTTC | 1 cut(s) | 256 |
| PfeI | GAWTC | 6 cut(s) | 315, 349, 367, 691, 913, 1045 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 806 |
| PfoI | TCCNGGA | 1 cut(s) | 1040 |
| PleI | GAGTC | 3 cut(s) | 314, 887, 961 |
| PpsI | GAGTC | 3 cut(s) | 314, 887, 961 |
| Ppu21I | YACGTR | 1 cut(s) | 555 |
| PpuMI | RGGWCCY | 1 cut(s) | 461 |
| Psp124BI | GAGCTC | 1 cut(s) | 982 |
| Psp1406I | AACGTT | 1 cut(s) | 1036 |
| Psp5II | RGGWCCY | 1 cut(s) | 461 |
| Psp6I | CCWGG | 2 cut(s) | 1040, 1065 |
| PspGI | CCWGG | 2 cut(s) | 1040, 1065 |
| PspN4I | GGNNCC | 3 cut(s) | 38, 813, 1072 |
| PspPI | GGNCC | 5 cut(s) | 37, 241, 461, 591, 1071 |
| PspPPI | RGGWCCY | 1 cut(s) | 461 |
| PsuI | RGATCY | 3 cut(s) | 133, 234, 811 |
| RsaI | GTAC | 1 cut(s) | 769 |
| RsaNI | GTAC | 1 cut(s) | 768 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| Rsr2I | CGGWCCG | 1 cut(s) | 241 |
| RsrII | CGGWCCG | 1 cut(s) | 241 |
| SacI | GAGCTC | 1 cut(s) | 982 |
| SaqAI | TTAA | 3 cut(s) | 42, 1055, 1129 |
| Sau3AI | GATC | 8 cut(s) | 133, 234, 522, 542, 586, 664, 681, 811 |
| Sau96I | GGNCC | 5 cut(s) | 37, 241, 461, 591, 1071 |
| SchI | GAGTC | 3 cut(s) | 315, 888, 962 |
| ScrFI | CCNGG | 2 cut(s) | 1042, 1067 |
| SduI | GDGCHC | 2 cut(s) | 187, 982 |
| SfaNI | GCATC | 4 cut(s) | 52, 265, 783, 1104 |
| SfcI | CTRYAG | 2 cut(s) | 31, 342 |
| SfuI | TTCGAA | 1 cut(s) | 1104 |
| SinI | GGWCC | 3 cut(s) | 241, 461, 1071 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SpeI | ACTAGT | 1 cut(s) | 1081 |
| Sse9I | AATT | 5 cut(s) | 562, 946, 986, 1001, 1106 |
| SspI | AATATT | 1 cut(s) | 486 |
| SspMI | CTAG | 3 cut(s) | 96, 212, 1082 |
| SstI | GAGCTC | 1 cut(s) | 982 |
| StyD4I | CCNGG | 2 cut(s) | 1040, 1065 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 5 cut(s) | 32, 148, 604, 1075, 1125 |
| TaiI | ACGT | 2 cut(s) | 557, 1039 |
| TaqI | TCGA | 7 cut(s) | 82, 313, 525, 684, 710, 1094, 1104 |
| TaqII | GACCGA | 1 cut(s) | 229 |
| TasI | AATT | 5 cut(s) | 562, 946, 986, 1001, 1106 |
| TfiI | GAWTC | 6 cut(s) | 315, 349, 367, 691, 913, 1045 |
| Tru1I | TTAA | 3 cut(s) | 42, 1055, 1129 |
| Tru9I | TTAA | 3 cut(s) | 42, 1055, 1129 |
| TscAI | CASTG | 3 cut(s) | 510, 609, 674 |
| TspDTI | ATGAA | 2 cut(s) | 444, 1014 |
| TspGWI | ACGGA | 2 cut(s) | 171, 233 |
| TspRI | CASTG | 3 cut(s) | 510, 609, 674 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 806 |
| VpaK11BI | GGWCC | 3 cut(s) | 241, 461, 1071 |
| XapI | RAATTY | 1 cut(s) | 946 |
| XmiI | GTMKAC | 1 cut(s) | 882 |
| XmnI | GAANNNNTTC | 1 cut(s) | 256 |
| XspI | CTAG | 3 cut(s) | 96, 212, 1082 |
| Zsp2I | ATGCAT | 1 cut(s) | 1119 |