ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 342, 358 |
| Acc16I | TGCGCA | 1 cut(s) | 1002 |
| Acc36I | ACCTGC | 1 cut(s) | 1320 |
| AccB1I | GGYRCC | 1 cut(s) | 648 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 659 |
| AccI | GTMKAC | 3 cut(s) | 123, 991, 1122 |
| AccII | CGCG | 4 cut(s) | 421, 485, 547, 611 |
| AclI | AACGTT | 2 cut(s) | 373, 499 |
| AclWI | GGATC | 8 cut(s) | 137, 150, 157, 242, 255, 397, 523, 1162 |
| AcoI | YGGCCR | 1 cut(s) | 681 |
| AcsI | RAATTY | 1 cut(s) | 322 |
| AcuI | CTGAAG | 1 cut(s) | 1305 |
| AcyI | GRCGYC | 2 cut(s) | 339, 355 |
| AfaI | GTAC | 3 cut(s) | 865, 903, 1326 |
| AfeI | AGCGCT | 1 cut(s) | 1306 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 139, 659, 855, 976, 1082, 1107, 1418 |
| AgsI | TTSAA | 3 cut(s) | 88, 1039, 1394 |
| AjnI | CCWGG | 3 cut(s) | 402, 528, 1100 |
| AluBI | AGCT | 2 cut(s) | 714, 1132 |
| AluI | AGCT | 2 cut(s) | 714, 1132 |
| Alw26I | GTCTC | 2 cut(s) | 626, 827 |
| AlwI | GGATC | 8 cut(s) | 137, 150, 157, 242, 255, 397, 523, 1162 |
| Ama87I | CYCGRG | 1 cut(s) | 623 |
| Aor51HI | AGCGCT | 1 cut(s) | 1306 |
| AoxI | GGCC | 2 cut(s) | 572, 681 |
| ApeKI | GCWGC | 7 cut(s) | 74, 209, 445, 859, 998, 1226, 1258 |
| ApoI | RAATTY | 1 cut(s) | 322 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 174 |
| AspLEI | GCGC | 7 cut(s) | 111, 421, 485, 547, 611, 1003, 1307 |
| AspS9I | GGNCC | 1 cut(s) | 1073 |
| AsuC2I | CCSGG | 3 cut(s) | 147, 201, 906 |
| AsuHPI | GGTGA | 1 cut(s) | 971 |
| AvaI | CYCGRG | 1 cut(s) | 623 |
| AvaII | GGWCC | 1 cut(s) | 1073 |
| BaeGI | GKGCMC | 1 cut(s) | 653 |
| BalI | TGGCCA | 1 cut(s) | 683 |
| BamHI | GGATCC | 2 cut(s) | 142, 247 |
| BanI | GGYRCC | 1 cut(s) | 648 |
| BauI | CACGAG | 1 cut(s) | 69 |
| BbvI | GCAGC | 7 cut(s) | 61, 196, 457, 846, 985, 1238, 1245 |
| BccI | CCATC | 7 cut(s) | 86, 186, 223, 622, 638, 734, 1395 |
| BceAI | ACGGC | 3 cut(s) | 275, 432, 558 |
| BciT130I | CCWGG | 3 cut(s) | 404, 530, 1102 |
| BciVI | GTATCC | 1 cut(s) | 1245 |
| BcnI | CCSGG | 3 cut(s) | 147, 201, 906 |
| BcoDI | GTCTC | 2 cut(s) | 626, 827 |
| BfaI | CTAG | 4 cut(s) | 327, 816, 1080, 1158 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BfoI | RGCGCY | 2 cut(s) | 112, 1308 |
| BfuAI | ACCTGC | 1 cut(s) | 1320 |
| BfuI | GTATCC | 1 cut(s) | 1245 |
| Bme1390I | CCNGG | 6 cut(s) | 147, 201, 404, 530, 906, 1102 |
| Bme18I | GGWCC | 1 cut(s) | 1073 |
| BmeT110I | CYCGRG | 1 cut(s) | 623 |
| BmgT120I | GGNCC | 1 cut(s) | 1073 |
| BmiI | GGNNCC | 5 cut(s) | 144, 249, 650, 724, 1106 |
| BmrFI | CCNGG | 6 cut(s) | 147, 201, 404, 530, 906, 1102 |
| BmsI | GCATC | 2 cut(s) | 877, 1353 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1049 |
| BpuEI | CTTGAG | 1 cut(s) | 1228 |
| BpuMI | CCSGG | 3 cut(s) | 147, 201, 906 |
| Bsa29I | ATCGAT | 1 cut(s) | 1201 |
| BsaBI | GATNNNNATC | 1 cut(s) | 8 |
| BsaHI | GRCGYC | 2 cut(s) | 339, 355 |
| BsaI | GGTCTC | 1 cut(s) | 827 |
| BsaJI | CCNNGG | 4 cut(s) | 402, 528, 905, 1016 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 663, 693, 1246, 1276 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 139, 659, 855, 976, 1082, 1107, 1418 |
| Bse118I | RCCGGY | 1 cut(s) | 605 |
| Bse1I | ACTGG | 1 cut(s) | 999 |
| Bse3DI | GCAATG | 3 cut(s) | 474, 600, 1236 |
| Bse8I | GATNNNNATC | 1 cut(s) | 8 |
| BseBI | CCWGG | 3 cut(s) | 404, 530, 1102 |
| BseCI | ATCGAT | 1 cut(s) | 1201 |
| BseDI | CCNNGG | 4 cut(s) | 402, 528, 905, 1016 |
| BseGI | GGATG | 6 cut(s) | 97, 234, 633, 649, 1368, 1406 |
| BseJI | GATNNNNATC | 1 cut(s) | 8 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 139, 659, 855, 976, 1082, 1107, 1418 |
| BseMI | GCAATG | 3 cut(s) | 474, 600, 1236 |
| BseMII | CTCAG | 1 cut(s) | 1040 |
| BseNI | ACTGG | 1 cut(s) | 999 |
| BseRI | GAGGAG | 4 cut(s) | 202, 724, 1367, 1388 |
| BseSI | GKGCMC | 1 cut(s) | 653 |
| BseXI | GCAGC | 7 cut(s) | 61, 196, 457, 846, 985, 1238, 1245 |
| BsgI | GTGCAG | 1 cut(s) | 858 |
| Bsh1236I | CGCG | 4 cut(s) | 421, 485, 547, 611 |
| Bsh1285I | CGRYCG | 1 cut(s) | 308 |
| BshFI | GGCC | 2 cut(s) | 574, 683 |
| BshNI | GGYRCC | 1 cut(s) | 648 |
| BshVI | ATCGAT | 1 cut(s) | 1201 |
| BsiEI | CGRYCG | 1 cut(s) | 308 |
| BsiHKCI | CYCGRG | 1 cut(s) | 623 |
| BsiSI | CCGG | 5 cut(s) | 147, 200, 606, 905, 1108 |
| BslFI | GGGAC | 2 cut(s) | 59, 1365 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 139, 659, 855, 976, 1082, 1107, 1418 |
| BsmAI | GTCTC | 2 cut(s) | 626, 827 |
| BsmFI | GGGAC | 2 cut(s) | 59, 1365 |
| BsnI | GGCC | 2 cut(s) | 574, 683 |
| Bso31I | GGTCTC | 1 cut(s) | 827 |
| BsoBI | CYCGRG | 1 cut(s) | 623 |
| Bsp1286I | GDGCHC | 1 cut(s) | 653 |
| BspANI | GGCC | 2 cut(s) | 574, 683 |
| BspCNI | CTCAG | 1 cut(s) | 1041 |
| BspDI | ATCGAT | 1 cut(s) | 1201 |
| BspFNI | CGCG | 4 cut(s) | 421, 485, 547, 611 |
| BspLI | GGNNCC | 5 cut(s) | 144, 249, 650, 724, 1106 |
| BspMAI | CTGCAG | 1 cut(s) | 214 |
| BspMI | ACCTGC | 1 cut(s) | 1320 |
| BspPI | GGATC | 8 cut(s) | 137, 150, 157, 242, 255, 397, 523, 1162 |
| BspT107I | GGYRCC | 1 cut(s) | 648 |
| BspTNI | GGTCTC | 1 cut(s) | 827 |
| BsrDI | GCAATG | 3 cut(s) | 474, 600, 1236 |
| BsrFI | RCCGGY | 1 cut(s) | 605 |
| BsrI | ACTGG | 1 cut(s) | 999 |
| BssAI | RCCGGY | 1 cut(s) | 605 |
| BssECI | CCNNGG | 4 cut(s) | 402, 528, 905, 1016 |
| BssNAI | GTATAC | 1 cut(s) | 992 |
| BssNI | GRCGYC | 2 cut(s) | 339, 355 |
| BssSI | CACGAG | 1 cut(s) | 69 |
| BssT1I | CCWWGG | 1 cut(s) | 1016 |
| Bst1107I | GTATAC | 1 cut(s) | 992 |
| Bst2BI | CACGAG | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 3 cut(s) | 404, 530, 1102 |
| Bst4CI | ACNGT | 1 cut(s) | 1127 |
| BstACI | GRCGYC | 2 cut(s) | 339, 355 |
| BstC8I | GCNNGC | 2 cut(s) | 607, 1113 |
| BstDEI | CTNAG | 1 cut(s) | 1049 |
| BstEII | GGTNACC | 1 cut(s) | 1421 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1080 |
| BstF5I | GGATG | 6 cut(s) | 97, 234, 633, 649, 1368, 1406 |
| BstFNI | CGCG | 4 cut(s) | 421, 485, 547, 611 |
| BstH2I | RGCGCY | 2 cut(s) | 112, 1308 |
| BstHHI | GCGC | 7 cut(s) | 111, 421, 485, 547, 611, 1003, 1307 |
| BstMAI | GTCTC | 2 cut(s) | 626, 827 |
| BstMCI | CGRYCG | 1 cut(s) | 308 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstNI | CCWGG | 3 cut(s) | 404, 530, 1102 |
| BstPI | GGTNACC | 1 cut(s) | 1421 |
| BstSCI | CCNGG | 6 cut(s) | 145, 199, 402, 528, 904, 1100 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstSLI | GKGCMC | 1 cut(s) | 653 |
| BstUI | CGCG | 4 cut(s) | 421, 485, 547, 611 |
| BstV1I | GCAGC | 7 cut(s) | 61, 196, 457, 846, 985, 1238, 1245 |
| BstX2I | RGATCY | 6 cut(s) | 142, 149, 247, 389, 515, 1154 |
| BstYI | RGATCY | 6 cut(s) | 142, 149, 247, 389, 515, 1154 |
| BstZ17I | GTATAC | 1 cut(s) | 992 |
| Bsu15I | ATCGAT | 1 cut(s) | 1201 |
| BsuI | GTATCC | 1 cut(s) | 1245 |
| BsuRI | GGCC | 2 cut(s) | 574, 683 |
| BsuTUI | ATCGAT | 1 cut(s) | 1201 |
| BtsCI | GGATG | 6 cut(s) | 97, 234, 633, 649, 1368, 1406 |
| BveI | ACCTGC | 1 cut(s) | 1320 |
| Cac8I | GCNNGC | 2 cut(s) | 607, 1113 |
| CfoI | GCGC | 7 cut(s) | 111, 421, 485, 547, 611, 1003, 1307 |
| Cfr10I | RCCGGY | 1 cut(s) | 605 |
| Cfr13I | GGNCC | 1 cut(s) | 1073 |
| ClaI | ATCGAT | 1 cut(s) | 1201 |
| Csp6I | GTAC | 3 cut(s) | 864, 902, 1325 |
| CviAII | CATG | 2 cut(s) | 1206, 1370 |
| CviQI | GTAC | 3 cut(s) | 864, 902, 1325 |
| DdeI | CTNAG | 1 cut(s) | 1049 |
| EaeI | YGGCCR | 1 cut(s) | 681 |
| Eco130I | CCWWGG | 1 cut(s) | 1016 |
| Eco31I | GGTCTC | 1 cut(s) | 827 |
| Eco47I | GGWCC | 1 cut(s) | 1073 |
| Eco47III | AGCGCT | 1 cut(s) | 1306 |
| Eco57I | CTGAAG | 1 cut(s) | 1305 |
| Eco88I | CYCGRG | 1 cut(s) | 623 |
| Eco91I | GGTNACC | 1 cut(s) | 1421 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1080 |
| EcoO65I | GGTNACC | 1 cut(s) | 1421 |
| EcoRII | CCWGG | 3 cut(s) | 402, 528, 1100 |
| EcoT14I | CCWWGG | 1 cut(s) | 1016 |
| ErhI | CCWWGG | 1 cut(s) | 1016 |
| FaeI | CATG | 2 cut(s) | 1209, 1373 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1179, 1211 |
| FaqI | GGGAC | 2 cut(s) | 59, 1365 |
| FatI | CATG | 2 cut(s) | 1205, 1369 |
| FblI | GTMKAC | 3 cut(s) | 123, 991, 1122 |
| FokI | GGATG | 6 cut(s) | 104, 241, 640, 656, 1375, 1413 |
| FspBI | CTAG | 4 cut(s) | 327, 816, 1080, 1158 |
| FspI | TGCGCA | 1 cut(s) | 1002 |
| GlaI | GCGC | 7 cut(s) | 110, 420, 484, 546, 610, 1002, 1306 |
| HaeII | RGCGCY | 2 cut(s) | 112, 1308 |
| HaeIII | GGCC | 2 cut(s) | 574, 683 |
| HapII | CCGG | 5 cut(s) | 147, 200, 606, 905, 1108 |
| HhaI | GCGC | 7 cut(s) | 111, 421, 485, 547, 611, 1003, 1307 |
| Hin1I | GRCGYC | 2 cut(s) | 339, 355 |
| Hin1II | CATG | 2 cut(s) | 1209, 1373 |
| Hin6I | GCGC | 7 cut(s) | 109, 419, 483, 545, 609, 1001, 1305 |
| HinP1I | GCGC | 7 cut(s) | 109, 419, 483, 545, 609, 1001, 1305 |
| HincII | GTYRAC | 2 cut(s) | 414, 540 |
| HindII | GTYRAC | 2 cut(s) | 414, 540 |
| HinfI | GANTC | 7 cut(s) | 47, 164, 170, 299, 365, 491, 966 |
| HpaII | CCGG | 5 cut(s) | 147, 200, 606, 905, 1108 |
| HphI | GGTGA | 1 cut(s) | 971 |
| Hpy166II | GTNNAC | 7 cut(s) | 124, 414, 540, 902, 930, 992, 1123 |
| Hpy188III | TCNNGA | 6 cut(s) | 303, 625, 816, 835, 1048, 1158 |
| Hpy8I | GTNNAC | 7 cut(s) | 124, 414, 540, 902, 930, 992, 1123 |
| Hpy99I | CGWCG | 4 cut(s) | 261, 344, 357, 916 |
| HpyAV | CCTTC | 1 cut(s) | 1422 |
| HpyCH4III | ACNGT | 1 cut(s) | 1127 |
| HpyCH4IV | ACGT | 8 cut(s) | 339, 355, 373, 410, 499, 536, 704, 1339 |
| HpyCH4V | TGCA | 8 cut(s) | 77, 212, 640, 875, 890, 1093, 1209, 1366 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 1 cut(s) | 1049 |
| HpySE526I | ACGT | 8 cut(s) | 339, 355, 373, 410, 499, 536, 704, 1339 |
| Hsp92I | GRCGYC | 2 cut(s) | 339, 355 |
| Hsp92II | CATG | 2 cut(s) | 1209, 1373 |
| HspAI | GCGC | 7 cut(s) | 109, 419, 483, 545, 609, 1001, 1305 |
| KroI | GCCGGC | 1 cut(s) | 605 |
| KroNI | GCCGGC | 1 cut(s) | 607 |
| LmnI | GCTCC | 3 cut(s) | 310, 711, 722 |
| Lsp1109I | GCAGC | 7 cut(s) | 61, 196, 457, 846, 985, 1238, 1245 |
| LweI | GCATC | 2 cut(s) | 877, 1353 |
| MaeI | CTAG | 4 cut(s) | 327, 816, 1080, 1158 |
| MaeII | ACGT | 8 cut(s) | 339, 355, 373, 410, 499, 536, 704, 1339 |
| MaeIII | GTNAC | 6 cut(s) | 406, 532, 959, 1011, 1315, 1421 |
| MboII | GAAGA | 1 cut(s) | 850 |
| MflI | RGATCY | 6 cut(s) | 142, 149, 247, 389, 515, 1154 |
| MhlI | GDGCHC | 1 cut(s) | 653 |
| MlsI | TGGCCA | 1 cut(s) | 683 |
| MluCI | AATT | 3 cut(s) | 322, 792, 1389 |
| MluNI | TGGCCA | 1 cut(s) | 683 |
| MlyI | GAGTC | 5 cut(s) | 41, 173, 374, 500, 975 |
| MmeI | TCCRAC | 5 cut(s) | 280, 342, 376, 468, 894 |
| Mox20I | TGGCCA | 1 cut(s) | 683 |
| MroNI | GCCGGC | 1 cut(s) | 605 |
| MroXI | GAANNNNTTC | 1 cut(s) | 174 |
| MscI | TGGCCA | 1 cut(s) | 683 |
| MseI | TTAA | 4 cut(s) | 8, 20, 30, 756 |
| MslI | CAYNNNNRTG | 1 cut(s) | 885 |
| Msp20I | TGGCCA | 1 cut(s) | 683 |
| MspI | CCGG | 5 cut(s) | 147, 200, 606, 905, 1108 |
| MspR9I | CCNGG | 6 cut(s) | 147, 201, 404, 530, 906, 1102 |
| MvaI | CCWGG | 3 cut(s) | 404, 530, 1102 |
| MvnI | CGCG | 4 cut(s) | 421, 485, 547, 611 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NaeI | GCCGGC | 1 cut(s) | 607 |
| NciI | CCSGG | 3 cut(s) | 147, 201, 906 |
| NgoMIV | GCCGGC | 1 cut(s) | 605 |
| NlaIII | CATG | 2 cut(s) | 1209, 1373 |
| NlaIV | GGNNCC | 5 cut(s) | 144, 249, 650, 724, 1106 |
| NmuCI | GTSAC | 2 cut(s) | 959, 1315 |
| NsbI | TGCGCA | 1 cut(s) | 1002 |
| PdiI | GCCGGC | 1 cut(s) | 607 |
| PdmI | GAANNNNTTC | 1 cut(s) | 174 |
| PfeI | GAWTC | 2 cut(s) | 170, 299 |
| PflFI | GACNNNGTC | 1 cut(s) | 965 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 659 |
| PfoI | TCCNGGA | 1 cut(s) | 145 |
| Ple19I | CGATCG | 1 cut(s) | 308 |
| PleI | GAGTC | 5 cut(s) | 41, 172, 373, 499, 974 |
| PpsI | GAGTC | 5 cut(s) | 41, 172, 373, 499, 974 |
| Psp1406I | AACGTT | 2 cut(s) | 373, 499 |
| Psp6I | CCWGG | 3 cut(s) | 402, 528, 1100 |
| PspEI | GGTNACC | 1 cut(s) | 1421 |
| PspGI | CCWGG | 3 cut(s) | 402, 528, 1100 |
| PspN4I | GGNNCC | 5 cut(s) | 144, 249, 650, 724, 1106 |
| PspPI | GGNCC | 1 cut(s) | 1073 |
| PstI | CTGCAG | 1 cut(s) | 214 |
| PsuI | RGATCY | 6 cut(s) | 142, 149, 247, 389, 515, 1154 |
| PsyI | GACNNNGTC | 1 cut(s) | 965 |
| PvuI | CGATCG | 1 cut(s) | 308 |
| RsaI | GTAC | 3 cut(s) | 865, 903, 1326 |
| RsaNI | GTAC | 3 cut(s) | 864, 902, 1325 |
| RseI | CAYNNNNRTG | 1 cut(s) | 885 |
| SaqAI | TTAA | 4 cut(s) | 8, 20, 30, 756 |
| Sau96I | GGNCC | 1 cut(s) | 1073 |
| SchI | GAGTC | 5 cut(s) | 41, 173, 374, 500, 975 |
| ScrFI | CCNGG | 6 cut(s) | 147, 201, 404, 530, 906, 1102 |
| SduI | GDGCHC | 1 cut(s) | 653 |
| SfaNI | GCATC | 2 cut(s) | 877, 1353 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| SinI | GGWCC | 1 cut(s) | 1073 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 885 |
| SmlI | CTYRAG | 1 cut(s) | 1243 |
| SmoI | CTYRAG | 1 cut(s) | 1243 |
| Sse9I | AATT | 3 cut(s) | 322, 792, 1389 |
| SspMI | CTAG | 4 cut(s) | 327, 816, 1080, 1158 |
| StyD4I | CCNGG | 6 cut(s) | 145, 199, 402, 528, 904, 1100 |
| StyI | CCWWGG | 1 cut(s) | 1016 |
| TaaI | ACNGT | 1 cut(s) | 1127 |
| TaiI | ACGT | 8 cut(s) | 342, 358, 376, 413, 502, 539, 707, 1342 |
| TaqI | TCGA | 4 cut(s) | 304, 801, 1201, 1214 |
| TasI | AATT | 3 cut(s) | 322, 792, 1389 |
| TauI | GCSGC | 6 cut(s) | 109, 424, 445, 550, 571, 574 |
| TfiI | GAWTC | 2 cut(s) | 170, 299 |
| Tru1I | TTAA | 4 cut(s) | 8, 20, 30, 756 |
| Tru9I | TTAA | 4 cut(s) | 8, 20, 30, 756 |
| TseFI | GTSAC | 2 cut(s) | 959, 1315 |
| TseI | GCWGC | 7 cut(s) | 74, 209, 445, 859, 998, 1226, 1258 |
| Tsp45I | GTSAC | 2 cut(s) | 959, 1315 |
| TspDTI | ATGAA | 2 cut(s) | 858, 1056 |
| Tth111I | GACNNNGTC | 1 cut(s) | 965 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 659 |
| VpaK11BI | GGWCC | 1 cut(s) | 1073 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1080 |
| XapI | RAATTY | 1 cut(s) | 322 |
| XbaI | TCTAGA | 2 cut(s) | 815, 1157 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 135 |
| XmiI | GTMKAC | 3 cut(s) | 123, 991, 1122 |
| XmnI | GAANNNNTTC | 1 cut(s) | 174 |
| XspI | CTAG | 4 cut(s) | 327, 816, 1080, 1158 |
| ZraI | GACGTC | 2 cut(s) | 340, 356 |