ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 343 |
| AccB1I | GGYRCC | 1 cut(s) | 343 |
| AciI | CCGC | 1 cut(s) | 386 |
| AcoI | YGGCCR | 1 cut(s) | 383 |
| AcuI | CTGAAG | 1 cut(s) | 282 |
| AfaI | GTAC | 1 cut(s) | 345 |
| AgsI | TTSAA | 1 cut(s) | 238 |
| AjnI | CCWGG | 1 cut(s) | 127 |
| AluBI | AGCT | 2 cut(s) | 34, 307 |
| AluI | AGCT | 2 cut(s) | 34, 307 |
| Alw26I | GTCTC | 1 cut(s) | 57 |
| Ama87I | CYCGRG | 1 cut(s) | 205 |
| AoxI | GGCC | 3 cut(s) | 201, 208, 383 |
| ApaI | GGGCCC | 1 cut(s) | 212 |
| ApeKI | GCWGC | 1 cut(s) | 388 |
| Asp718I | GGTACC | 1 cut(s) | 343 |
| AspS9I | GGNCC | 3 cut(s) | 202, 208, 209 |
| AsuC2I | CCSGG | 2 cut(s) | 206, 207 |
| AvaI | CYCGRG | 1 cut(s) | 205 |
| BaeGI | GKGCMC | 1 cut(s) | 212 |
| BanI | GGYRCC | 1 cut(s) | 343 |
| BanII | GRGCYC | 1 cut(s) | 212 |
| BbvI | GCAGC | 1 cut(s) | 375 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 1 cut(s) | 129 |
| BcnI | CCSGG | 2 cut(s) | 206, 207 |
| BcoDI | GTCTC | 1 cut(s) | 57 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BisI | GCNGC | 2 cut(s) | 386, 389 |
| BlsI | GCNGC | 2 cut(s) | 387, 390 |
| Bme1390I | CCNGG | 3 cut(s) | 129, 206, 207 |
| BmeT110I | CYCGRG | 1 cut(s) | 205 |
| BmgT120I | GGNCC | 3 cut(s) | 202, 208, 209 |
| BmiI | GGNNCC | 3 cut(s) | 204, 210, 345 |
| BmrFI | CCNGG | 3 cut(s) | 129, 206, 207 |
| BmsI | GCATC | 2 cut(s) | 75, 122 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 37, 69 |
| BpuMI | CCSGG | 2 cut(s) | 206, 207 |
| BsaJI | CCNNGG | 4 cut(s) | 5, 127, 204, 205 |
| BseBI | CCWGG | 1 cut(s) | 129 |
| BseDI | CCNNGG | 4 cut(s) | 5, 127, 204, 205 |
| BseGI | GGATG | 2 cut(s) | 137, 271 |
| BseSI | GKGCMC | 1 cut(s) | 212 |
| BseX3I | CGGCCG | 1 cut(s) | 383 |
| BseXI | GCAGC | 1 cut(s) | 375 |
| Bsh1285I | CGRYCG | 1 cut(s) | 386 |
| BshFI | GGCC | 3 cut(s) | 203, 210, 385 |
| BshNI | GGYRCC | 1 cut(s) | 343 |
| BsiEI | CGRYCG | 1 cut(s) | 386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 205 |
| BsiSI | CCGG | 1 cut(s) | 206 |
| BslFI | GGGAC | 1 cut(s) | 127 |
| BsmAI | GTCTC | 1 cut(s) | 57 |
| BsmFI | GGGAC | 1 cut(s) | 127 |
| BsnI | GGCC | 3 cut(s) | 203, 210, 385 |
| BsoBI | CYCGRG | 1 cut(s) | 205 |
| Bsp120I | GGGCCC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 1 cut(s) | 212 |
| Bsp143I | GATC | 1 cut(s) | 397 |
| BspACI | CCGC | 1 cut(s) | 386 |
| BspANI | GGCC | 3 cut(s) | 203, 210, 385 |
| BspLI | GGNNCC | 3 cut(s) | 204, 210, 345 |
| BspT107I | GGYRCC | 1 cut(s) | 343 |
| BssECI | CCNNGG | 4 cut(s) | 5, 127, 204, 205 |
| BssMI | GATC | 1 cut(s) | 397 |
| Bst2UI | CCWGG | 1 cut(s) | 129 |
| Bst4CI | ACNGT | 2 cut(s) | 194, 367 |
| BstC8I | GCNNGC | 2 cut(s) | 64, 305 |
| BstDEI | CTNAG | 1 cut(s) | 311 |
| BstF5I | GGATG | 2 cut(s) | 137, 271 |
| BstKTI | GATC | 1 cut(s) | 400 |
| BstMAI | GTCTC | 1 cut(s) | 57 |
| BstMBI | GATC | 1 cut(s) | 397 |
| BstMCI | CGRYCG | 1 cut(s) | 386 |
| BstNI | CCWGG | 1 cut(s) | 129 |
| BstSCI | CCNGG | 3 cut(s) | 127, 204, 205 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstSLI | GKGCMC | 1 cut(s) | 212 |
| BstV1I | GCAGC | 1 cut(s) | 375 |
| BstZI | CGGCCG | 1 cut(s) | 383 |
| BsuRI | GGCC | 3 cut(s) | 203, 210, 385 |
| BtsCI | GGATG | 2 cut(s) | 137, 271 |
| Cac8I | GCNNGC | 2 cut(s) | 64, 305 |
| Cfr13I | GGNCC | 3 cut(s) | 202, 208, 209 |
| Cfr9I | CCCGGG | 1 cut(s) | 205 |
| Csp6I | GTAC | 1 cut(s) | 344 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 316, 351 |
| CviAII | CATG | 1 cut(s) | 370 |
| CviJI | RGCY | 8 cut(s) | 34, 49, 80, 203, 210, 278, 307, 385 |
| CviKI_1 | RGCY | 8 cut(s) | 34, 49, 80, 203, 210, 278, 307, 385 |
| CviQI | GTAC | 1 cut(s) | 344 |
| DdeI | CTNAG | 1 cut(s) | 311 |
| DpnI | GATC | 1 cut(s) | 399 |
| DpnII | GATC | 1 cut(s) | 397 |
| EaeI | YGGCCR | 1 cut(s) | 383 |
| EagI | CGGCCG | 1 cut(s) | 383 |
| EclXI | CGGCCG | 1 cut(s) | 383 |
| Eco24I | GRGCYC | 1 cut(s) | 212 |
| Eco52I | CGGCCG | 1 cut(s) | 383 |
| Eco57I | CTGAAG | 1 cut(s) | 282 |
| Eco88I | CYCGRG | 1 cut(s) | 205 |
| EcoO109I | RGGNCCY | 2 cut(s) | 202, 209 |
| EcoRII | CCWGG | 1 cut(s) | 127 |
| EcoT38I | GRGCYC | 1 cut(s) | 212 |
| FaeI | CATG | 1 cut(s) | 373 |
| FaiI | YATR | 5 cut(s) | 29, 179, 281, 371, 403 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 275, 307 |
| FaqI | GGGAC | 1 cut(s) | 127 |
| FatI | CATG | 1 cut(s) | 369 |
| Fnu4HI | GCNGC | 2 cut(s) | 386, 389 |
| FokI | GGATG | 2 cut(s) | 144, 278 |
| FriOI | GRGCYC | 1 cut(s) | 212 |
| Fsp4HI | GCNGC | 2 cut(s) | 386, 389 |
| GluI | GCNGC | 2 cut(s) | 386, 389 |
| HaeIII | GGCC | 3 cut(s) | 203, 210, 385 |
| HapII | CCGG | 1 cut(s) | 206 |
| Hin1II | CATG | 1 cut(s) | 373 |
| HincII | GTYRAC | 1 cut(s) | 322 |
| HindII | GTYRAC | 1 cut(s) | 322 |
| HindIII | AAGCTT | 1 cut(s) | 305 |
| HinfI | GANTC | 1 cut(s) | 259 |
| HpaI | GTTAAC | 1 cut(s) | 322 |
| HpaII | CCGG | 1 cut(s) | 206 |
| Hpy166II | GTNNAC | 2 cut(s) | 20, 322 |
| Hpy188III | TCNNGA | 2 cut(s) | 43, 263 |
| Hpy8I | GTNNAC | 2 cut(s) | 20, 322 |
| HpyAV | CCTTC | 1 cut(s) | 155 |
| HpyCH4III | ACNGT | 2 cut(s) | 194, 367 |
| HpyCH4V | TGCA | 1 cut(s) | 391 |
| HpyF3I | CTNAG | 1 cut(s) | 311 |
| Hsp92II | CATG | 1 cut(s) | 373 |
| KpnI | GGTACC | 1 cut(s) | 347 |
| KspAI | GTTAAC | 1 cut(s) | 322 |
| Kzo9I | GATC | 1 cut(s) | 397 |
| LpnPI | CCDG | 7 cut(s) | 76, 114, 141, 219, 225, 248, 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 375 |
| LweI | GCATC | 2 cut(s) | 75, 122 |
| MaeIII | GTNAC | 1 cut(s) | 194 |
| MalI | GATC | 1 cut(s) | 399 |
| MboI | GATC | 1 cut(s) | 397 |
| MboII | GAAGA | 1 cut(s) | 226 |
| MhlI | GDGCHC | 1 cut(s) | 212 |
| MlyI | GAGTC | 1 cut(s) | 268 |
| MnlI | CCTC | 3 cut(s) | 39, 96, 154 |
| MseI | TTAA | 3 cut(s) | 117, 189, 321 |
| MspA1I | CMGCKG | 1 cut(s) | 388 |
| MspI | CCGG | 1 cut(s) | 206 |
| MspR9I | CCNGG | 3 cut(s) | 129, 206, 207 |
| MvaI | CCWGG | 1 cut(s) | 129 |
| NciI | CCSGG | 2 cut(s) | 206, 207 |
| NdeII | GATC | 1 cut(s) | 397 |
| NlaIII | CATG | 1 cut(s) | 373 |
| NlaIV | GGNNCC | 3 cut(s) | 204, 210, 345 |
| NmeAIII | GCCGAG | 1 cut(s) | 30 |
| PkrI | GCNGC | 2 cut(s) | 387, 390 |
| PleI | GAGTC | 1 cut(s) | 267 |
| PpsI | GAGTC | 1 cut(s) | 267 |
| Psp6I | CCWGG | 1 cut(s) | 127 |
| PspGI | CCWGG | 1 cut(s) | 127 |
| PspN4I | GGNNCC | 3 cut(s) | 204, 210, 345 |
| PspOMI | GGGCCC | 1 cut(s) | 208 |
| PspPI | GGNCC | 3 cut(s) | 202, 208, 209 |
| RsaI | GTAC | 1 cut(s) | 345 |
| RsaNI | GTAC | 1 cut(s) | 344 |
| SaqAI | TTAA | 3 cut(s) | 117, 189, 321 |
| SatI | GCNGC | 2 cut(s) | 386, 389 |
| Sau3AI | GATC | 1 cut(s) | 397 |
| Sau96I | GGNCC | 3 cut(s) | 202, 208, 209 |
| SchI | GAGTC | 1 cut(s) | 268 |
| ScrFI | CCNGG | 3 cut(s) | 129, 206, 207 |
| SduI | GDGCHC | 1 cut(s) | 212 |
| SetI | ASST | 4 cut(s) | 36, 123, 309, 349 |
| SfaNI | GCATC | 2 cut(s) | 75, 122 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SmaI | CCCGGG | 1 cut(s) | 207 |
| SsiI | CCGC | 1 cut(s) | 386 |
| StyD4I | CCNGG | 3 cut(s) | 127, 204, 205 |
| TaaI | ACNGT | 2 cut(s) | 194, 367 |
| TauI | GCSGC | 1 cut(s) | 388 |
| Tru1I | TTAA | 3 cut(s) | 117, 189, 321 |
| Tru9I | TTAA | 3 cut(s) | 117, 189, 321 |
| TseI | GCWGC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 1 cut(s) | 182 |
| TspMI | CCCGGG | 1 cut(s) | 205 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 70 |
| XmaI | CCCGGG | 1 cut(s) | 205 |