Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 489 |
| AccB1I | GGYRCC | 1 cut(s) | 631 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 319 |
| AccIII | TCCGGA | 1 cut(s) | 343 |
| AclWI | GGATC | 1 cut(s) | 105 |
| AcoI | YGGCCR | 1 cut(s) | 238 |
| AcsI | RAATTY | 1 cut(s) | 267 |
| AfaI | GTAC | 2 cut(s) | 37, 126 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 250, 251, 319 |
| AgeI | ACCGGT | 1 cut(s) | 538 |
| AgsI | TTSAA | 1 cut(s) | 575 |
| AjiI | CACGTC | 2 cut(s) | 193, 438 |
| AjnI | CCWGG | 1 cut(s) | 443 |
| AluBI | AGCT | 2 cut(s) | 277, 371 |
| AluI | AGCT | 2 cut(s) | 277, 371 |
| Alw26I | GTCTC | 3 cut(s) | 125, 314, 386 |
| AlwI | GGATC | 1 cut(s) | 105 |
| Ama87I | CYCGRG | 1 cut(s) | 272 |
| Aor13HI | TCCGGA | 1 cut(s) | 343 |
| AoxI | GGCC | 2 cut(s) | 200, 238 |
| ApeKI | GCWGC | 1 cut(s) | 371 |
| ApoI | RAATTY | 1 cut(s) | 267 |
| AsiGI | ACCGGT | 1 cut(s) | 538 |
| AspLEI | GCGC | 1 cut(s) | 222 |
| AspS9I | GGNCC | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| AvaI | CYCGRG | 1 cut(s) | 272 |
| BanI | GGYRCC | 1 cut(s) | 631 |
| BanII | GRGCYC | 1 cut(s) | 340 |
| BbvI | GCAGC | 1 cut(s) | 358 |
| BccI | CCATC | 2 cut(s) | 211, 622 |
| BceAI | ACGGC | 1 cut(s) | 253 |
| BciT130I | CCWGG | 1 cut(s) | 445 |
| BciVI | GTATCC | 1 cut(s) | 69 |
| BclI | TGATCA | 1 cut(s) | 499 |
| BcoDI | GTCTC | 3 cut(s) | 125, 314, 386 |
| BfaI | CTAG | 1 cut(s) | 468 |
| BfmI | CTRYAG | 1 cut(s) | 372 |
| BfoI | RGCGCY | 1 cut(s) | 223 |
| BfuAI | ACCTGC | 1 cut(s) | 489 |
| BfuI | GTATCC | 1 cut(s) | 69 |
| BglII | AGATCT | 1 cut(s) | 494 |
| BisI | GCNGC | 1 cut(s) | 372 |
| BlsI | GCNGC | 1 cut(s) | 373 |
| Bme1390I | CCNGG | 1 cut(s) | 445 |
| BmeT110I | CYCGRG | 1 cut(s) | 272 |
| BmgBI | CACGTC | 2 cut(s) | 193, 438 |
| BmgT120I | GGNCC | 1 cut(s) | 200 |
| BmiI | GGNNCC | 2 cut(s) | 201, 633 |
| BmrFI | CCNGG | 1 cut(s) | 445 |
| BmsI | GCATC | 3 cut(s) | 175, 313, 388 |
| Bsa29I | ATCGAT | 1 cut(s) | 183 |
| BsaI | GGTCTC | 2 cut(s) | 125, 386 |
| BsaJI | CCNNGG | 1 cut(s) | 63 |
| BsaWI | WCCGGW | 3 cut(s) | 113, 343, 538 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 250, 251, 319 |
| Bse118I | RCCGGY | 1 cut(s) | 538 |
| BseAI | TCCGGA | 1 cut(s) | 343 |
| BseBI | CCWGG | 1 cut(s) | 445 |
| BseCI | ATCGAT | 1 cut(s) | 183 |
| BseDI | CCNNGG | 1 cut(s) | 63 |
| BseGI | GGATG | 3 cut(s) | 142, 328, 633 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 250, 251, 319 |
| BseRI | GAGGAG | 1 cut(s) | 4 |
| BseXI | GCAGC | 1 cut(s) | 358 |
| Bsh1285I | CGRYCG | 1 cut(s) | 100 |
| BshFI | GGCC | 2 cut(s) | 202, 240 |
| BshNI | GGYRCC | 1 cut(s) | 631 |
| BshTI | ACCGGT | 1 cut(s) | 538 |
| BshVI | ATCGAT | 1 cut(s) | 183 |
| BsiEI | CGRYCG | 1 cut(s) | 100 |
| BsiHKCI | CYCGRG | 1 cut(s) | 272 |
| BsiSI | CCGG | 3 cut(s) | 114, 344, 539 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 250, 251, 319 |
| BsmAI | GTCTC | 3 cut(s) | 125, 314, 386 |
| BsnI | GGCC | 2 cut(s) | 202, 240 |
| Bso31I | GGTCTC | 2 cut(s) | 125, 386 |
| BsoBI | CYCGRG | 1 cut(s) | 272 |
| Bsp1286I | GDGCHC | 1 cut(s) | 340 |
| Bsp13I | TCCGGA | 1 cut(s) | 343 |
| Bsp143I | GATC | 4 cut(s) | 97, 110, 494, 499 |
| BspANI | GGCC | 2 cut(s) | 202, 240 |
| BspDI | ATCGAT | 1 cut(s) | 183 |
| BspEI | TCCGGA | 1 cut(s) | 343 |
| BspLI | GGNNCC | 2 cut(s) | 201, 633 |
| BspMAI | CTGCAG | 1 cut(s) | 376 |
| BspMI | ACCTGC | 1 cut(s) | 489 |
| BspPI | GGATC | 1 cut(s) | 105 |
| BspQI | GCTCTTC | 1 cut(s) | 345 |
| BspT107I | GGYRCC | 1 cut(s) | 631 |
| BspTNI | GGTCTC | 2 cut(s) | 125, 386 |
| BsrFI | RCCGGY | 1 cut(s) | 538 |
| BssAI | RCCGGY | 1 cut(s) | 538 |
| BssECI | CCNNGG | 1 cut(s) | 63 |
| BssMI | GATC | 4 cut(s) | 97, 110, 494, 499 |
| BssT1I | CCWWGG | 1 cut(s) | 63 |
| Bst2UI | CCWGG | 1 cut(s) | 445 |
| Bst4CI | ACNGT | 1 cut(s) | 166 |
| Bst6I | CTCTTC | 4 cut(s) | 63, 345, 389, 570 |
| BstF5I | GGATG | 3 cut(s) | 142, 328, 633 |
| BstH2I | RGCGCY | 1 cut(s) | 223 |
| BstHHI | GCGC | 1 cut(s) | 222 |
| BstKTI | GATC | 4 cut(s) | 100, 113, 497, 502 |
| BstMAI | GTCTC | 3 cut(s) | 125, 314, 386 |
| BstMBI | GATC | 4 cut(s) | 97, 110, 494, 499 |
| BstMCI | CGRYCG | 1 cut(s) | 100 |
| BstNI | CCWGG | 1 cut(s) | 445 |
| BstSCI | CCNGG | 1 cut(s) | 443 |
| BstSFI | CTRYAG | 1 cut(s) | 372 |
| BstV1I | GCAGC | 1 cut(s) | 358 |
| BstX2I | RGATCY | 1 cut(s) | 494 |
| BstYI | RGATCY | 1 cut(s) | 494 |
| Bsu15I | ATCGAT | 1 cut(s) | 183 |
| BsuI | GTATCC | 1 cut(s) | 69 |
| BsuRI | GGCC | 2 cut(s) | 202, 240 |
| BsuTUI | ATCGAT | 1 cut(s) | 183 |
| BtgZI | GCGATG | 1 cut(s) | 411 |
| BtrI | CACGTC | 2 cut(s) | 193, 438 |
| BtsCI | GGATG | 3 cut(s) | 142, 328, 633 |
| BtsIMutI | CAGTG | 1 cut(s) | 28 |
| BveI | ACCTGC | 1 cut(s) | 489 |
| CfoI | GCGC | 1 cut(s) | 222 |
| Cfr10I | RCCGGY | 1 cut(s) | 538 |
| Cfr13I | GGNCC | 1 cut(s) | 200 |
| ClaI | ATCGAT | 1 cut(s) | 183 |
| Csp6I | GTAC | 2 cut(s) | 36, 125 |
| CspAI | ACCGGT | 1 cut(s) | 538 |
| CviAII | CATG | 4 cut(s) | 145, 503, 593, 624 |
| CviJI | RGCY | 8 cut(s) | 68, 202, 240, 277, 338, 371, 448, 462 |
| CviKI_1 | RGCY | 8 cut(s) | 68, 202, 240, 277, 338, 371, 448, 462 |
| CviQI | GTAC | 2 cut(s) | 36, 125 |
| DpnI | GATC | 4 cut(s) | 99, 112, 496, 501 |
| DpnII | GATC | 4 cut(s) | 97, 110, 494, 499 |
| EaeI | YGGCCR | 1 cut(s) | 238 |
| Eam1104I | CTCTTC | 4 cut(s) | 63, 345, 389, 570 |
| EarI | CTCTTC | 4 cut(s) | 63, 345, 389, 570 |
| Eco130I | CCWWGG | 1 cut(s) | 63 |
| Eco24I | GRGCYC | 1 cut(s) | 340 |
| Eco31I | GGTCTC | 2 cut(s) | 125, 386 |
| Eco88I | CYCGRG | 1 cut(s) | 272 |
| EcoRII | CCWGG | 1 cut(s) | 443 |
| EcoT14I | CCWWGG | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 1 cut(s) | 340 |
| ErhI | CCWWGG | 1 cut(s) | 63 |
| FaeI | CATG | 4 cut(s) | 148, 506, 596, 627 |
| FaiI | YATR | 9 cut(s) | 54, 133, 146, 158, 180, 405, 504, 594, 625 |
| FatI | CATG | 4 cut(s) | 144, 502, 592, 623 |
| FbaI | TGATCA | 1 cut(s) | 499 |
| Fnu4HI | GCNGC | 1 cut(s) | 372 |
| FokI | GGATG | 2 cut(s) | 149, 335 |
| FriOI | GRGCYC | 1 cut(s) | 340 |
| Fsp4HI | GCNGC | 1 cut(s) | 372 |
| FspBI | CTAG | 1 cut(s) | 468 |
| GlaI | GCGC | 1 cut(s) | 221 |
| GluI | GCNGC | 1 cut(s) | 372 |
| HaeII | RGCGCY | 1 cut(s) | 223 |
| HaeIII | GGCC | 2 cut(s) | 202, 240 |
| HapII | CCGG | 3 cut(s) | 114, 344, 539 |
| HhaI | GCGC | 1 cut(s) | 222 |
| Hin1II | CATG | 4 cut(s) | 148, 506, 596, 627 |
| Hin6I | GCGC | 1 cut(s) | 220 |
| HinP1I | GCGC | 1 cut(s) | 220 |
| HincII | GTYRAC | 1 cut(s) | 478 |
| HindII | GTYRAC | 1 cut(s) | 478 |
| HinfI | GANTC | 3 cut(s) | 307, 415, 596 |
| HpaI | GTTAAC | 1 cut(s) | 478 |
| HpaII | CCGG | 3 cut(s) | 114, 344, 539 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 1 cut(s) | 478 |
| Hpy188I | TCNGA | 3 cut(s) | 208, 306, 499 |
| Hpy188III | TCNNGA | 3 cut(s) | 272, 344, 419 |
| Hpy8I | GTNNAC | 1 cut(s) | 478 |
| Hpy99I | CGWCG | 3 cut(s) | 194, 336, 561 |
| HpyAV | CCTTC | 2 cut(s) | 190, 523 |
| HpyCH4III | ACNGT | 1 cut(s) | 166 |
| HpyCH4IV | ACGT | 2 cut(s) | 192, 437 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 359, 374, 435 |
| HpySE526I | ACGT | 2 cut(s) | 192, 437 |
| Hsp92II | CATG | 4 cut(s) | 148, 506, 596, 627 |
| HspAI | GCGC | 1 cut(s) | 220 |
| Kpn2I | TCCGGA | 1 cut(s) | 343 |
| Ksp22I | TGATCA | 1 cut(s) | 499 |
| KspAI | GTTAAC | 1 cut(s) | 478 |
| Kzo9I | GATC | 4 cut(s) | 97, 110, 494, 499 |
| LguI | GCTCTTC | 1 cut(s) | 345 |
| LmnI | GCTCC | 2 cut(s) | 368, 393 |
| LpnPI | CCDG | 9 cut(s) | 127, 258, 276, 357, 360, 430, 457, 494, 552 |
| Lsp1109I | GCAGC | 1 cut(s) | 358 |
| LweI | GCATC | 3 cut(s) | 175, 313, 388 |
| MaeI | CTAG | 1 cut(s) | 468 |
| MaeII | ACGT | 2 cut(s) | 192, 437 |
| MaeIII | GTNAC | 1 cut(s) | 350 |
| MalI | GATC | 4 cut(s) | 99, 112, 496, 501 |
| MboI | GATC | 4 cut(s) | 97, 110, 494, 499 |
| MboII | GAAGA | 4 cut(s) | 50, 332, 376, 587 |
| MfeI | CAATTG | 1 cut(s) | 317 |
| MflI | RGATCY | 1 cut(s) | 494 |
| MhlI | GDGCHC | 1 cut(s) | 340 |
| MluCI | AATT | 2 cut(s) | 267, 317 |
| MlyI | GAGTC | 2 cut(s) | 316, 424 |
| MmeI | TCCRAC | 2 cut(s) | 337, 498 |
| MnlI | CCTC | 4 cut(s) | 25, 495, 545, 610 |
| MroI | TCCGGA | 1 cut(s) | 343 |
| MseI | TTAA | 3 cut(s) | 261, 477, 637 |
| MspI | CCGG | 3 cut(s) | 114, 344, 539 |
| MspR9I | CCNGG | 1 cut(s) | 445 |
| MunI | CAATTG | 1 cut(s) | 317 |
| MvaI | CCWGG | 1 cut(s) | 445 |
| NdeII | GATC | 4 cut(s) | 97, 110, 494, 499 |
| NlaIII | CATG | 4 cut(s) | 148, 506, 596, 627 |
| NlaIV | GGNNCC | 2 cut(s) | 201, 633 |
| PaeR7I | CTCGAG | 1 cut(s) | 272 |
| PciSI | GCTCTTC | 1 cut(s) | 345 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 106, 189 |
| PfeI | GAWTC | 1 cut(s) | 596 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 319 |
| PinAI | ACCGGT | 1 cut(s) | 538 |
| PkrI | GCNGC | 1 cut(s) | 373 |
| Ple19I | CGATCG | 1 cut(s) | 100 |
| PleI | GAGTC | 2 cut(s) | 315, 423 |
| PpsI | GAGTC | 2 cut(s) | 315, 423 |
| Psp6I | CCWGG | 1 cut(s) | 443 |
| PspGI | CCWGG | 1 cut(s) | 443 |
| PspN4I | GGNNCC | 2 cut(s) | 201, 633 |
| PspPI | GGNCC | 1 cut(s) | 200 |
| PstI | CTGCAG | 1 cut(s) | 376 |
| PsuI | RGATCY | 1 cut(s) | 494 |
| PvuI | CGATCG | 1 cut(s) | 100 |
| RsaI | GTAC | 2 cut(s) | 37, 126 |
| RsaNI | GTAC | 2 cut(s) | 36, 125 |
| SapI | GCTCTTC | 1 cut(s) | 345 |
| SaqAI | TTAA | 3 cut(s) | 261, 477, 637 |
| SatI | GCNGC | 1 cut(s) | 372 |
| Sau3AI | GATC | 4 cut(s) | 97, 110, 494, 499 |
| Sau96I | GGNCC | 1 cut(s) | 200 |
| SchI | GAGTC | 2 cut(s) | 316, 424 |
| ScrFI | CCNGG | 1 cut(s) | 445 |
| SduI | GDGCHC | 1 cut(s) | 340 |
| SetI | ASST | 7 cut(s) | 195, 279, 357, 373, 440, 483, 572 |
| SfaNI | GCATC | 3 cut(s) | 175, 313, 388 |
| SfcI | CTRYAG | 1 cut(s) | 372 |
| Sfr274I | CTCGAG | 1 cut(s) | 272 |
| SlaI | CTCGAG | 1 cut(s) | 272 |
| SmlI | CTYRAG | 1 cut(s) | 272 |
| SmoI | CTYRAG | 1 cut(s) | 272 |
| Sse9I | AATT | 2 cut(s) | 267, 317 |
| SspI | AATATT | 1 cut(s) | 85 |
| SspMI | CTAG | 1 cut(s) | 468 |
| StyD4I | CCNGG | 1 cut(s) | 443 |
| StyI | CCWWGG | 1 cut(s) | 63 |
| TaaI | ACNGT | 1 cut(s) | 166 |
| TaiI | ACGT | 2 cut(s) | 195, 440 |
| TaqI | TCGA | 4 cut(s) | 96, 100, 183, 273 |
| TasI | AATT | 2 cut(s) | 267, 317 |
| TfiI | GAWTC | 1 cut(s) | 596 |
| Tru1I | TTAA | 3 cut(s) | 261, 477, 637 |
| Tru9I | TTAA | 3 cut(s) | 261, 477, 637 |
| TscAI | CASTG | 1 cut(s) | 28 |
| TseI | GCWGC | 1 cut(s) | 371 |
| TspDTI | ATGAA | 2 cut(s) | 279, 609 |
| TspGWI | ACGGA | 2 cut(s) | 320, 574 |
| TspRI | CASTG | 1 cut(s) | 28 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 319 |
| XapI | RAATTY | 1 cut(s) | 267 |
| XhoI | CTCGAG | 1 cut(s) | 272 |
| XspI | CTAG | 1 cut(s) | 468 |