Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 73 | 8e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 33 |
| AcsI | RAATTY | 3 cut(s) | 214, 233, 328 |
| AfaI | GTAC | 1 cut(s) | 163 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 48, 49, 69 |
| AgsI | TTSAA | 1 cut(s) | 151 |
| AluBI | AGCT | 1 cut(s) | 351 |
| AluI | AGCT | 1 cut(s) | 351 |
| Alw21I | GWGCWC | 1 cut(s) | 49 |
| Alw26I | GTCTC | 1 cut(s) | 98 |
| AlwI | GGATC | 1 cut(s) | 33 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| AoxI | GGCC | 1 cut(s) | 51 |
| ApaI | GGGCCC | 1 cut(s) | 55 |
| ApoI | RAATTY | 3 cut(s) | 214, 233, 328 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspS9I | GGNCC | 2 cut(s) | 51, 52 |
| AsuC2I | CCSGG | 1 cut(s) | 26 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 1 cut(s) | 55 |
| BanII | GRGCYC | 2 cut(s) | 55, 76 |
| BbsI | GAAGAC | 1 cut(s) | 79 |
| Bbv12I | GWGCWC | 1 cut(s) | 49 |
| BccI | CCATC | 1 cut(s) | 257 |
| BcnI | CCSGG | 1 cut(s) | 26 |
| BcoDI | GTCTC | 1 cut(s) | 98 |
| BfaI | CTAG | 1 cut(s) | 32 |
| BfmI | CTRYAG | 1 cut(s) | 371 |
| Bme1390I | CCNGG | 1 cut(s) | 26 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 2 cut(s) | 51, 52 |
| BmiI | GGNNCC | 2 cut(s) | 53, 61 |
| BmrFI | CCNGG | 1 cut(s) | 26 |
| BmrI | ACTGGG | 1 cut(s) | 195 |
| BmsI | GCATC | 1 cut(s) | 192 |
| BmuI | ACTGGG | 1 cut(s) | 195 |
| BpiI | GAAGAC | 1 cut(s) | 79 |
| BpuMI | CCSGG | 1 cut(s) | 26 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 55 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 95, 125, 258, 288 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 48, 49, 69 |
| Bse1I | ACTGG | 3 cut(s) | 83, 190, 307 |
| BseDI | CCNNGG | 2 cut(s) | 25, 55 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 48, 49, 69 |
| BseMII | CTCAG | 1 cut(s) | 122 |
| BseNI | ACTGG | 3 cut(s) | 83, 190, 307 |
| BseSI | GKGCMC | 1 cut(s) | 55 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 1 cut(s) | 49 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BsiSI | CCGG | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 48, 49, 69 |
| BsmAI | GTCTC | 1 cut(s) | 98 |
| BsmI | GAATGC | 1 cut(s) | 336 |
| BsnI | GGCC | 1 cut(s) | 53 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp120I | GGGCCC | 1 cut(s) | 51 |
| Bsp1286I | GDGCHC | 3 cut(s) | 49, 55, 76 |
| Bsp1407I | TGTACA | 1 cut(s) | 161 |
| Bsp143I | GATC | 1 cut(s) | 38 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspCNI | CTCAG | 1 cut(s) | 121 |
| BspLI | GGNNCC | 2 cut(s) | 53, 61 |
| BspPI | GGATC | 1 cut(s) | 33 |
| BsrGI | TGTACA | 1 cut(s) | 161 |
| BsrI | ACTGG | 3 cut(s) | 83, 190, 307 |
| BssECI | CCNNGG | 2 cut(s) | 25, 55 |
| BssMI | GATC | 1 cut(s) | 38 |
| BssT1I | CCWWGG | 1 cut(s) | 55 |
| Bst4CI | ACNGT | 1 cut(s) | 375 |
| BstAUI | TGTACA | 1 cut(s) | 161 |
| BstDEI | CTNAG | 2 cut(s) | 68, 108 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 67 |
| BstKTI | GATC | 1 cut(s) | 41 |
| BstMAI | GTCTC | 1 cut(s) | 98 |
| BstMBI | GATC | 1 cut(s) | 38 |
| BstSCI | CCNGG | 1 cut(s) | 24 |
| BstSFI | CTRYAG | 1 cut(s) | 371 |
| BstSLI | GKGCMC | 1 cut(s) | 55 |
| BstV2I | GAAGAC | 1 cut(s) | 79 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BtsIMutI | CAGTG | 1 cut(s) | 183 |
| Cfr13I | GGNCC | 2 cut(s) | 51, 52 |
| Csp6I | GTAC | 1 cut(s) | 162 |
| CviAII | CATG | 1 cut(s) | 100 |
| CviJI | RGCY | 4 cut(s) | 53, 74, 306, 351 |
| CviKI_1 | RGCY | 4 cut(s) | 53, 74, 306, 351 |
| CviQI | GTAC | 1 cut(s) | 162 |
| DdeI | CTNAG | 2 cut(s) | 68, 108 |
| DpnI | GATC | 1 cut(s) | 40 |
| DpnII | GATC | 1 cut(s) | 38 |
| DraI | TTTAAA | 1 cut(s) | 232 |
| Eco130I | CCWWGG | 1 cut(s) | 55 |
| Eco24I | GRGCYC | 2 cut(s) | 55, 76 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 52 |
| EcoRI | GAATTC | 2 cut(s) | 214, 328 |
| EcoT14I | CCWWGG | 1 cut(s) | 55 |
| EcoT38I | GRGCYC | 2 cut(s) | 55, 76 |
| ErhI | CCWWGG | 1 cut(s) | 55 |
| FaeI | CATG | 1 cut(s) | 103 |
| FaiI | YATR | 5 cut(s) | 78, 101, 258, 288, 312 |
| FatI | CATG | 1 cut(s) | 99 |
| FriOI | GRGCYC | 2 cut(s) | 55, 76 |
| FspBI | CTAG | 1 cut(s) | 32 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| HapII | CCGG | 1 cut(s) | 25 |
| Hin1II | CATG | 1 cut(s) | 103 |
| HinfI | GANTC | 2 cut(s) | 106, 362 |
| HpaII | CCGG | 1 cut(s) | 25 |
| Hpy188I | TCNGA | 3 cut(s) | 201, 220, 283 |
| Hpy188III | TCNNGA | 1 cut(s) | 42 |
| Hpy99I | CGWCG | 2 cut(s) | 328, 362 |
| HpyAV | CCTTC | 1 cut(s) | 330 |
| HpyCH4III | ACNGT | 1 cut(s) | 375 |
| HpyF3I | CTNAG | 2 cut(s) | 68, 108 |
| Hsp92II | CATG | 1 cut(s) | 103 |
| Kzo9I | GATC | 1 cut(s) | 38 |
| LmnI | GCTCC | 1 cut(s) | 348 |
| LpnPI | CCDG | 4 cut(s) | 38, 96, 171, 288 |
| LweI | GCATC | 1 cut(s) | 192 |
| MaeI | CTAG | 1 cut(s) | 32 |
| MaeIII | GTNAC | 1 cut(s) | 179 |
| MalI | GATC | 1 cut(s) | 40 |
| MboI | GATC | 1 cut(s) | 38 |
| MboII | GAAGA | 7 cut(s) | 16, 79, 128, 131, 234, 237, 346 |
| MhlI | GDGCHC | 3 cut(s) | 49, 55, 76 |
| MluCI | AATT | 4 cut(s) | 151, 214, 233, 328 |
| MlyI | GAGTC | 1 cut(s) | 100 |
| MmeI | TCCRAC | 1 cut(s) | 93 |
| MnlI | CCTC | 2 cut(s) | 107, 188 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 2 cut(s) | 137, 231 |
| MslI | CAYNNNNRTG | 1 cut(s) | 261 |
| MspI | CCGG | 1 cut(s) | 25 |
| MspR9I | CCNGG | 1 cut(s) | 26 |
| Mva1269I | GAATGC | 1 cut(s) | 336 |
| NciI | CCSGG | 1 cut(s) | 26 |
| NdeII | GATC | 1 cut(s) | 38 |
| NlaIII | CATG | 1 cut(s) | 103 |
| NlaIV | GGNNCC | 2 cut(s) | 53, 61 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| PctI | GAATGC | 1 cut(s) | 336 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 1 cut(s) | 362 |
| PleI | GAGTC | 1 cut(s) | 100 |
| PpsI | GAGTC | 1 cut(s) | 100 |
| PspN4I | GGNNCC | 2 cut(s) | 53, 61 |
| PspOMI | GGGCCC | 1 cut(s) | 51 |
| PspPI | GGNCC | 2 cut(s) | 51, 52 |
| RsaI | GTAC | 1 cut(s) | 163 |
| RsaNI | GTAC | 1 cut(s) | 162 |
| RseI | CAYNNNNRTG | 1 cut(s) | 261 |
| SaqAI | TTAA | 2 cut(s) | 137, 231 |
| Sau3AI | GATC | 1 cut(s) | 38 |
| Sau96I | GGNCC | 2 cut(s) | 51, 52 |
| SchI | GAGTC | 1 cut(s) | 100 |
| ScrFI | CCNGG | 1 cut(s) | 26 |
| SduI | GDGCHC | 3 cut(s) | 49, 55, 76 |
| SetI | ASST | 4 cut(s) | 65, 175, 199, 353 |
| SfaNI | GCATC | 1 cut(s) | 192 |
| SfcI | CTRYAG | 1 cut(s) | 371 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 261 |
| Sse9I | AATT | 4 cut(s) | 151, 214, 233, 328 |
| SspMI | CTAG | 1 cut(s) | 32 |
| StyD4I | CCNGG | 1 cut(s) | 24 |
| StyI | CCWWGG | 1 cut(s) | 55 |
| TaaI | ACNGT | 1 cut(s) | 375 |
| TaqI | TCGA | 2 cut(s) | 323, 357 |
| TasI | AATT | 4 cut(s) | 151, 214, 233, 328 |
| TatI | WGTACW | 1 cut(s) | 161 |
| TfiI | GAWTC | 1 cut(s) | 362 |
| Tru1I | TTAA | 2 cut(s) | 137, 231 |
| Tru9I | TTAA | 2 cut(s) | 137, 231 |
| TscAI | CASTG | 1 cut(s) | 190 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 2 cut(s) | 17, 329 |
| TspRI | CASTG | 1 cut(s) | 190 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 67 |
| XapI | RAATTY | 3 cut(s) | 214, 233, 328 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 32 |