ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 199 |
| AfaI | GTAC | 1 cut(s) | 289 |
| AgsI | TTSAA | 4 cut(s) | 80, 101, 133, 595 |
| AjnI | CCWGG | 1 cut(s) | 487 |
| AluBI | AGCT | 3 cut(s) | 83, 111, 535 |
| AluI | AGCT | 3 cut(s) | 83, 111, 535 |
| Alw21I | GWGCWC | 2 cut(s) | 113, 160 |
| Alw26I | GTCTC | 1 cut(s) | 253 |
| Alw44I | GTGCAC | 1 cut(s) | 156 |
| Ama87I | CYCGRG | 1 cut(s) | 190 |
| Aor13HI | TCCGGA | 1 cut(s) | 199 |
| AoxI | GGCC | 4 cut(s) | 465, 490, 522, 659 |
| ApaLI | GTGCAC | 1 cut(s) | 156 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 75 |
| AspS9I | GGNCC | 2 cut(s) | 94, 491 |
| AsuHPI | GGTGA | 1 cut(s) | 613 |
| AvaI | CYCGRG | 1 cut(s) | 190 |
| AvaII | GGWCC | 1 cut(s) | 94 |
| BaeGI | GKGCMC | 1 cut(s) | 160 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 21, 54 |
| BanII | GRGCYC | 2 cut(s) | 113, 197 |
| BbsI | GAAGAC | 1 cut(s) | 163 |
| Bbv12I | GWGCWC | 2 cut(s) | 113, 160 |
| BciT130I | CCWGG | 1 cut(s) | 489 |
| BcoDI | GTCTC | 1 cut(s) | 253 |
| BfaI | CTAG | 3 cut(s) | 357, 377, 426 |
| BglII | AGATCT | 1 cut(s) | 301 |
| Bme1390I | CCNGG | 1 cut(s) | 489 |
| Bme18I | GGWCC | 1 cut(s) | 94 |
| BmeT110I | CYCGRG | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 2 cut(s) | 94, 491 |
| BmiI | GGNNCC | 2 cut(s) | 95, 493 |
| BmrFI | CCNGG | 1 cut(s) | 489 |
| BmsI | GCATC | 2 cut(s) | 193, 547 |
| BpiI | GAAGAC | 1 cut(s) | 163 |
| BsaJI | CCNNGG | 1 cut(s) | 487 |
| BsaWI | WCCGGW | 1 cut(s) | 199 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 537, 567 |
| BseAI | TCCGGA | 1 cut(s) | 199 |
| BseBI | CCWGG | 1 cut(s) | 489 |
| BseDI | CCNNGG | 1 cut(s) | 487 |
| BseGI | GGATG | 2 cut(s) | 208, 562 |
| BseMII | CTCAG | 2 cut(s) | 393, 630 |
| BseRI | GAGGAG | 2 cut(s) | 269, 599 |
| BseSI | GKGCMC | 1 cut(s) | 160 |
| BshFI | GGCC | 4 cut(s) | 467, 492, 524, 661 |
| BsiHKAI | GWGCWC | 2 cut(s) | 113, 160 |
| BsiHKCI | CYCGRG | 1 cut(s) | 190 |
| BsiSI | CCGG | 1 cut(s) | 200 |
| BslFI | GGGAC | 2 cut(s) | 107, 140 |
| BsmAI | GTCTC | 1 cut(s) | 253 |
| BsmFI | GGGAC | 2 cut(s) | 107, 140 |
| BsnI | GGCC | 4 cut(s) | 467, 492, 524, 661 |
| BsoBI | CYCGRG | 1 cut(s) | 190 |
| Bsp1286I | GDGCHC | 3 cut(s) | 113, 160, 197 |
| Bsp13I | TCCGGA | 1 cut(s) | 199 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspANI | GGCC | 4 cut(s) | 467, 492, 524, 661 |
| BspCNI | CTCAG | 2 cut(s) | 394, 631 |
| BspEI | TCCGGA | 1 cut(s) | 199 |
| BspLI | GGNNCC | 2 cut(s) | 95, 493 |
| BssECI | CCNNGG | 1 cut(s) | 487 |
| BssMI | GATC | 1 cut(s) | 301 |
| Bst2UI | CCWGG | 1 cut(s) | 489 |
| Bst4CI | ACNGT | 4 cut(s) | 37, 162, 238, 500 |
| BstDEI | CTNAG | 2 cut(s) | 402, 639 |
| BstF5I | GGATG | 2 cut(s) | 208, 562 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMAI | GTCTC | 1 cut(s) | 253 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 164, 437, 464 |
| BstNI | CCWGG | 1 cut(s) | 489 |
| BstSCI | CCNGG | 1 cut(s) | 487 |
| BstSLI | GKGCMC | 1 cut(s) | 160 |
| BstV2I | GAAGAC | 1 cut(s) | 163 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| BsuRI | GGCC | 4 cut(s) | 467, 492, 524, 661 |
| BtsCI | GGATG | 2 cut(s) | 208, 562 |
| Cfr13I | GGNCC | 2 cut(s) | 94, 491 |
| CseI | GACGC | 1 cut(s) | 333 |
| Csp6I | GTAC | 1 cut(s) | 288 |
| CviAII | CATG | 1 cut(s) | 469 |
| CviQI | GTAC | 1 cut(s) | 288 |
| DdeI | CTNAG | 2 cut(s) | 402, 639 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| Ecl136II | GAGCTC | 1 cut(s) | 111 |
| Eco147I | AGGCCT | 1 cut(s) | 524 |
| Eco24I | GRGCYC | 2 cut(s) | 113, 197 |
| Eco47I | GGWCC | 1 cut(s) | 94 |
| Eco53kI | GAGCTC | 1 cut(s) | 111 |
| Eco88I | CYCGRG | 1 cut(s) | 190 |
| EcoICRI | GAGCTC | 1 cut(s) | 111 |
| EcoO109I | RGGNCCY | 1 cut(s) | 94 |
| EcoRII | CCWGG | 1 cut(s) | 487 |
| EcoT38I | GRGCYC | 2 cut(s) | 113, 197 |
| FaeI | CATG | 1 cut(s) | 472 |
| FaiI | YATR | 6 cut(s) | 419, 453, 470, 645, 647, 673 |
| FaqI | GGGAC | 2 cut(s) | 107, 140 |
| FatI | CATG | 1 cut(s) | 468 |
| FokI | GGATG | 2 cut(s) | 215, 569 |
| FriOI | GRGCYC | 2 cut(s) | 113, 197 |
| FspBI | CTAG | 3 cut(s) | 357, 377, 426 |
| HaeIII | GGCC | 4 cut(s) | 467, 492, 524, 661 |
| HapII | CCGG | 1 cut(s) | 200 |
| HgaI | GACGC | 1 cut(s) | 333 |
| Hin1II | CATG | 1 cut(s) | 472 |
| HincII | GTYRAC | 1 cut(s) | 234 |
| HindII | GTYRAC | 1 cut(s) | 234 |
| HinfI | GANTC | 4 cut(s) | 76, 261, 619, 649 |
| HpaI | GTTAAC | 1 cut(s) | 234 |
| HpaII | CCGG | 1 cut(s) | 200 |
| HphI | GGTGA | 1 cut(s) | 613 |
| Hpy166II | GTNNAC | 3 cut(s) | 158, 234, 288 |
| Hpy188I | TCNGA | 3 cut(s) | 403, 583, 624 |
| Hpy188III | TCNNGA | 6 cut(s) | 190, 200, 305, 320, 367, 377 |
| Hpy8I | GTNNAC | 3 cut(s) | 158, 234, 288 |
| Hpy99I | CGWCG | 1 cut(s) | 500 |
| HpyAV | CCTTC | 5 cut(s) | 84, 196, 286, 592, 619 |
| HpyCH4III | ACNGT | 4 cut(s) | 37, 162, 238, 500 |
| HpyCH4IV | ACGT | 1 cut(s) | 104 |
| HpyCH4V | TGCA | 4 cut(s) | 158, 206, 472, 614 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 164, 437, 464 |
| HpyF3I | CTNAG | 2 cut(s) | 402, 639 |
| HpySE526I | ACGT | 1 cut(s) | 104 |
| Hsp92II | CATG | 1 cut(s) | 472 |
| Kpn2I | TCCGGA | 1 cut(s) | 199 |
| KspAI | GTTAAC | 1 cut(s) | 234 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LmnI | GCTCC | 2 cut(s) | 108, 532 |
| LpnPI | CCDG | 8 cut(s) | 27, 99, 213, 290, 474, 501, 506, 651 |
| LweI | GCATC | 2 cut(s) | 193, 547 |
| MaeI | CTAG | 3 cut(s) | 357, 377, 426 |
| MaeII | ACGT | 1 cut(s) | 104 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 3 cut(s) | 163, 236, 607 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MhlI | GDGCHC | 3 cut(s) | 113, 160, 197 |
| MluCI | AATT | 2 cut(s) | 141, 663 |
| MlyI | GAGTC | 2 cut(s) | 255, 658 |
| MmeI | TCCRAC | 1 cut(s) | 8 |
| MnlI | CCTC | 6 cut(s) | 4, 207, 247, 430, 577, 651 |
| MroI | TCCGGA | 1 cut(s) | 199 |
| MroXI | GAANNNNTTC | 1 cut(s) | 75 |
| MseI | TTAA | 1 cut(s) | 233 |
| MspI | CCGG | 1 cut(s) | 200 |
| MspR9I | CCNGG | 1 cut(s) | 489 |
| MvaI | CCWGG | 1 cut(s) | 489 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 164, 437, 464 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIII | CATG | 1 cut(s) | 472 |
| NlaIV | GGNNCC | 2 cut(s) | 95, 493 |
| PaeR7I | CTCGAG | 1 cut(s) | 190 |
| PceI | AGGCCT | 1 cut(s) | 524 |
| PdmI | GAANNNNTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 2 cut(s) | 76, 619 |
| PleI | GAGTC | 2 cut(s) | 255, 657 |
| PpsI | GAGTC | 2 cut(s) | 255, 657 |
| PpuMI | RGGWCCY | 1 cut(s) | 94 |
| Psp124BI | GAGCTC | 1 cut(s) | 113 |
| Psp5II | RGGWCCY | 1 cut(s) | 94 |
| Psp6I | CCWGG | 1 cut(s) | 487 |
| PspGI | CCWGG | 1 cut(s) | 487 |
| PspN4I | GGNNCC | 2 cut(s) | 95, 493 |
| PspPI | GGNCC | 2 cut(s) | 94, 491 |
| PspPPI | RGGWCCY | 1 cut(s) | 94 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| RsaI | GTAC | 1 cut(s) | 289 |
| RsaNI | GTAC | 1 cut(s) | 288 |
| SacI | GAGCTC | 1 cut(s) | 113 |
| SaqAI | TTAA | 1 cut(s) | 233 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| Sau96I | GGNCC | 2 cut(s) | 94, 491 |
| SchI | GAGTC | 2 cut(s) | 255, 658 |
| ScrFI | CCNGG | 1 cut(s) | 489 |
| SduI | GDGCHC | 3 cut(s) | 113, 160, 197 |
| SfaNI | GCATC | 2 cut(s) | 193, 547 |
| Sfr274I | CTCGAG | 1 cut(s) | 190 |
| SinI | GGWCC | 1 cut(s) | 94 |
| SlaI | CTCGAG | 1 cut(s) | 190 |
| SmlI | CTYRAG | 1 cut(s) | 190 |
| SmoI | CTYRAG | 1 cut(s) | 190 |
| Sse9I | AATT | 2 cut(s) | 141, 663 |
| SseBI | AGGCCT | 1 cut(s) | 524 |
| SspMI | CTAG | 3 cut(s) | 357, 377, 426 |
| SstI | GAGCTC | 1 cut(s) | 113 |
| StuI | AGGCCT | 1 cut(s) | 524 |
| StyD4I | CCNGG | 1 cut(s) | 487 |
| TaaI | ACNGT | 4 cut(s) | 37, 162, 238, 500 |
| TaiI | ACGT | 1 cut(s) | 107 |
| TaqI | TCGA | 2 cut(s) | 191, 366 |
| TasI | AATT | 2 cut(s) | 141, 663 |
| TfiI | GAWTC | 2 cut(s) | 76, 619 |
| Tru1I | TTAA | 1 cut(s) | 233 |
| Tru9I | TTAA | 1 cut(s) | 233 |
| TspGWI | ACGGA | 1 cut(s) | 325 |
| VneI | GTGCAC | 1 cut(s) | 156 |
| VpaK11BI | GGWCC | 1 cut(s) | 94 |
| XbaI | TCTAGA | 1 cut(s) | 376 |
| XhoI | CTCGAG | 1 cut(s) | 190 |
| XmnI | GAANNNNTTC | 1 cut(s) | 75 |
| XspI | CTAG | 3 cut(s) | 357, 377, 426 |