ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 55 |
| AccII | CGCG | 1 cut(s) | 337 |
| AciI | CCGC | 6 cut(s) | 337, 344, 413, 881, 949, 1149 |
| AclWI | GGATC | 7 cut(s) | 70, 78, 288, 301, 719, 937, 950 |
| AcuI | CTGAAG | 1 cut(s) | 1077 |
| AfaI | GTAC | 3 cut(s) | 234, 655, 1345 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 586, 1041 |
| AgsI | TTSAA | 6 cut(s) | 248, 424, 1048, 1156, 1178, 1256 |
| AjiI | CACGTC | 2 cut(s) | 1022, 1324 |
| AjnI | CCWGG | 3 cut(s) | 202, 551, 774 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 313, 345 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 515, 547 |
| AluBI | AGCT | 4 cut(s) | 136, 772, 959, 1274 |
| AluI | AGCT | 4 cut(s) | 136, 772, 959, 1274 |
| Alw21I | GWGCWC | 2 cut(s) | 774, 1027 |
| Alw26I | GTCTC | 3 cut(s) | 280, 304, 411 |
| AlwI | GGATC | 7 cut(s) | 70, 78, 288, 301, 719, 937, 950 |
| AoxI | GGCC | 2 cut(s) | 645, 1280 |
| ApeKI | GCWGC | 3 cut(s) | 383, 784, 1217 |
| AspLEI | GCGC | 4 cut(s) | 337, 388, 517, 579 |
| AspS9I | GGNCC | 7 cut(s) | 284, 555, 646, 951, 1146, 1280, 1331 |
| AsuC2I | CCSGG | 1 cut(s) | 1278 |
| AsuHPI | GGTGA | 2 cut(s) | 511, 734 |
| AsuII | TTCGAA | 1 cut(s) | 10 |
| AvaII | GGWCC | 5 cut(s) | 284, 555, 951, 1146, 1331 |
| AxyI | CCTNAGG | 1 cut(s) | 93 |
| BamHI | GGATCC | 2 cut(s) | 293, 942 |
| BanII | GRGCYC | 1 cut(s) | 774 |
| BauI | CACGAG | 1 cut(s) | 1182 |
| Bbv12I | GWGCWC | 2 cut(s) | 774, 1027 |
| BbvI | GCAGC | 3 cut(s) | 395, 796, 1229 |
| BccI | CCATC | 5 cut(s) | 499, 570, 737, 1043, 1280 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 473, 507 |
| BciT130I | CCWGG | 3 cut(s) | 204, 553, 776 |
| BclI | TGATCA | 2 cut(s) | 124, 661 |
| BcnI | CCSGG | 1 cut(s) | 1278 |
| BcoDI | GTCTC | 3 cut(s) | 280, 304, 411 |
| BfaI | CTAG | 1 cut(s) | 438 |
| BfoI | RGCGCY | 1 cut(s) | 580 |
| BisI | GCNGC | 3 cut(s) | 384, 785, 1218 |
| BlsI | GCNGC | 3 cut(s) | 385, 786, 1219 |
| Bme1390I | CCNGG | 4 cut(s) | 204, 553, 776, 1278 |
| Bme18I | GGWCC | 5 cut(s) | 284, 555, 951, 1146, 1331 |
| BmgBI | CACGTC | 2 cut(s) | 1022, 1324 |
| BmgT120I | GGNCC | 7 cut(s) | 284, 555, 646, 951, 1146, 1280, 1331 |
| BmiI | GGNNCC | 5 cut(s) | 295, 648, 944, 1147, 1281 |
| BmrFI | CCNGG | 4 cut(s) | 204, 553, 776, 1278 |
| BmsI | GCATC | 4 cut(s) | 360, 361, 471, 821 |
| BpmI | CTGGAG | 3 cut(s) | 474, 701, 758 |
| Bpu14I | TTCGAA | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 2 cut(s) | 909, 1176 |
| BpuMI | CCSGG | 1 cut(s) | 1278 |
| BsaAI | YACGTR | 1 cut(s) | 149 |
| BsaBI | GATNNNNATC | 1 cut(s) | 351 |
| BsaJI | CCNNGG | 3 cut(s) | 31, 401, 1277 |
| BsaWI | WCCGGW | 1 cut(s) | 317 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 447, 477 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 586, 1041 |
| Bse1I | ACTGG | 1 cut(s) | 684 |
| Bse21I | CCTNAGG | 1 cut(s) | 93 |
| Bse3DI | GCAATG | 2 cut(s) | 408, 1000 |
| Bse8I | GATNNNNATC | 1 cut(s) | 351 |
| BseBI | CCWGG | 3 cut(s) | 204, 553, 776 |
| BseDI | CCNNGG | 3 cut(s) | 31, 401, 1277 |
| BseGI | GGATG | 4 cut(s) | 228, 277, 448, 1296 |
| BseJI | GATNNNNATC | 1 cut(s) | 351 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 586, 1041 |
| BseMI | GCAATG | 2 cut(s) | 408, 1000 |
| BseNI | ACTGG | 1 cut(s) | 684 |
| BseRI | GAGGAG | 1 cut(s) | 200 |
| BseXI | GCAGC | 3 cut(s) | 395, 796, 1229 |
| BsgI | GTGCAG | 1 cut(s) | 730 |
| Bsh1236I | CGCG | 1 cut(s) | 337 |
| BshFI | GGCC | 2 cut(s) | 647, 1282 |
| BsiHKAI | GWGCWC | 2 cut(s) | 774, 1027 |
| BsiSI | CCGG | 2 cut(s) | 318, 1277 |
| BslFI | GGGAC | 2 cut(s) | 1159, 1279 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 586, 1041 |
| BsmAI | GTCTC | 3 cut(s) | 280, 304, 411 |
| BsmFI | GGGAC | 2 cut(s) | 1159, 1279 |
| BsnI | GGCC | 2 cut(s) | 647, 1282 |
| Bsp119I | TTCGAA | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 2 cut(s) | 774, 1027 |
| Bsp1407I | TGTACA | 1 cut(s) | 1343 |
| BspACI | CCGC | 6 cut(s) | 337, 344, 413, 881, 949, 1149 |
| BspANI | GGCC | 2 cut(s) | 647, 1282 |
| BspFNI | CGCG | 1 cut(s) | 337 |
| BspLI | GGNNCC | 5 cut(s) | 295, 648, 944, 1147, 1281 |
| BspPI | GGATC | 7 cut(s) | 70, 78, 288, 301, 719, 937, 950 |
| BspT104I | TTCGAA | 1 cut(s) | 10 |
| BsrDI | GCAATG | 2 cut(s) | 408, 1000 |
| BsrGI | TGTACA | 1 cut(s) | 1343 |
| BsrI | ACTGG | 1 cut(s) | 684 |
| BssECI | CCNNGG | 3 cut(s) | 31, 401, 1277 |
| BssSI | CACGAG | 1 cut(s) | 1182 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst2BI | CACGAG | 1 cut(s) | 1182 |
| Bst2UI | CCWGG | 3 cut(s) | 204, 553, 776 |
| Bst4CI | ACNGT | 2 cut(s) | 675, 1174 |
| Bst6I | CTCTTC | 2 cut(s) | 1227, 1270 |
| BstAUI | TGTACA | 1 cut(s) | 1343 |
| BstBAI | YACGTR | 1 cut(s) | 149 |
| BstBI | TTCGAA | 1 cut(s) | 10 |
| BstC8I | GCNNGC | 4 cut(s) | 486, 836, 891, 972 |
| BstDEI | CTNAG | 2 cut(s) | 93, 570 |
| BstF5I | GGATG | 4 cut(s) | 228, 277, 448, 1296 |
| BstFNI | CGCG | 1 cut(s) | 337 |
| BstH2I | RGCGCY | 1 cut(s) | 580 |
| BstHHI | GCGC | 4 cut(s) | 337, 388, 517, 579 |
| BstMAI | GTCTC | 3 cut(s) | 280, 304, 411 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 1031 |
| BstNI | CCWGG | 3 cut(s) | 204, 553, 776 |
| BstNSI | RCATGY | 1 cut(s) | 269 |
| BstSCI | CCNGG | 4 cut(s) | 202, 551, 774, 1276 |
| BstSNI | TACGTA | 1 cut(s) | 149 |
| BstUI | CGCG | 1 cut(s) | 337 |
| BstV1I | GCAGC | 3 cut(s) | 395, 796, 1229 |
| BstX2I | RGATCY | 3 cut(s) | 70, 293, 942 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 306 |
| BstYI | RGATCY | 3 cut(s) | 70, 293, 942 |
| Bsu36I | CCTNAGG | 1 cut(s) | 93 |
| BsuRI | GGCC | 2 cut(s) | 647, 1282 |
| BtgZI | GCGATG | 1 cut(s) | 207 |
| BtrI | CACGTC | 2 cut(s) | 1022, 1324 |
| BtsCI | GGATG | 4 cut(s) | 228, 277, 448, 1296 |
| BtsI | GCAGTG | 1 cut(s) | 713 |
| BtsIMutI | CAGTG | 2 cut(s) | 671, 713 |
| Cac8I | GCNNGC | 4 cut(s) | 486, 836, 891, 972 |
| CfoI | GCGC | 4 cut(s) | 337, 388, 517, 579 |
| Cfr13I | GGNCC | 7 cut(s) | 284, 555, 646, 951, 1146, 1280, 1331 |
| CseI | GACGC | 1 cut(s) | 646 |
| CsiI | ACCWGGT | 1 cut(s) | 551 |
| Csp6I | GTAC | 3 cut(s) | 233, 654, 1344 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 249, 284 |
| CviAII | CATG | 4 cut(s) | 266, 780, 1142, 1198 |
| CviQI | GTAC | 3 cut(s) | 233, 654, 1344 |
| DdeI | CTNAG | 2 cut(s) | 93, 570 |
| Eam1104I | CTCTTC | 2 cut(s) | 1227, 1270 |
| EarI | CTCTTC | 2 cut(s) | 1227, 1270 |
| Ecl136II | GAGCTC | 1 cut(s) | 772 |
| Eco105I | TACGTA | 1 cut(s) | 149 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco24I | GRGCYC | 1 cut(s) | 774 |
| Eco47I | GGWCC | 5 cut(s) | 284, 555, 951, 1146, 1331 |
| Eco53kI | GAGCTC | 1 cut(s) | 772 |
| Eco57I | CTGAAG | 1 cut(s) | 1077 |
| Eco81I | CCTNAGG | 1 cut(s) | 93 |
| EcoICRI | GAGCTC | 1 cut(s) | 772 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1280 |
| EcoRII | CCWGG | 3 cut(s) | 202, 551, 774 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| EcoT38I | GRGCYC | 1 cut(s) | 774 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| FaeI | CATG | 4 cut(s) | 269, 783, 1145, 1201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 903, 935 |
| FaqI | GGGAC | 2 cut(s) | 1159, 1279 |
| FatI | CATG | 4 cut(s) | 265, 779, 1141, 1197 |
| FauI | CCCGC | 1 cut(s) | 406 |
| FbaI | TGATCA | 2 cut(s) | 124, 661 |
| FblI | GTMKAC | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 3 cut(s) | 384, 785, 1218 |
| FokI | GGATG | 4 cut(s) | 235, 284, 455, 1303 |
| FriOI | GRGCYC | 1 cut(s) | 774 |
| Fsp4HI | GCNGC | 3 cut(s) | 384, 785, 1218 |
| FspBI | CTAG | 1 cut(s) | 438 |
| GlaI | GCGC | 4 cut(s) | 336, 387, 516, 578 |
| GluI | GCNGC | 3 cut(s) | 384, 785, 1218 |
| GsuI | CTGGAG | 3 cut(s) | 474, 701, 758 |
| HaeII | RGCGCY | 1 cut(s) | 580 |
| HaeIII | GGCC | 2 cut(s) | 647, 1282 |
| HapII | CCGG | 2 cut(s) | 318, 1277 |
| HgaI | GACGC | 1 cut(s) | 646 |
| HhaI | GCGC | 4 cut(s) | 337, 388, 517, 579 |
| Hin1II | CATG | 4 cut(s) | 269, 783, 1145, 1201 |
| Hin6I | GCGC | 4 cut(s) | 335, 386, 515, 577 |
| HinP1I | GCGC | 4 cut(s) | 335, 386, 515, 577 |
| HincII | GTYRAC | 2 cut(s) | 56, 636 |
| HindII | GTYRAC | 2 cut(s) | 56, 636 |
| HindIII | AAGCTT | 1 cut(s) | 957 |
| HinfI | GANTC | 6 cut(s) | 12, 140, 197, 906, 1189, 1201 |
| HpaII | CCGG | 2 cut(s) | 318, 1277 |
| HphI | GGTGA | 2 cut(s) | 511, 734 |
| Hpy166II | GTNNAC | 5 cut(s) | 56, 597, 636, 671, 1344 |
| Hpy188I | TCNGA | 8 cut(s) | 75, 80, 112, 559, 661, 1228, 1241, 1331 |
| Hpy188III | TCNNGA | 6 cut(s) | 154, 453, 494, 926, 1205, 1309 |
| Hpy8I | GTNNAC | 5 cut(s) | 56, 597, 636, 671, 1344 |
| Hpy99I | CGWCG | 4 cut(s) | 57, 60, 1328, 1331 |
| HpyAV | CCTTC | 2 cut(s) | 1003, 1052 |
| HpyCH4III | ACNGT | 2 cut(s) | 675, 1174 |
| HpyCH4IV | ACGT | 5 cut(s) | 148, 231, 359, 1021, 1323 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 1031 |
| HpyF3I | CTNAG | 2 cut(s) | 93, 570 |
| HpySE526I | ACGT | 5 cut(s) | 148, 231, 359, 1021, 1323 |
| Hsp92II | CATG | 4 cut(s) | 269, 783, 1145, 1201 |
| HspAI | GCGC | 4 cut(s) | 335, 386, 515, 577 |
| Ksp22I | TGATCA | 2 cut(s) | 124, 661 |
| LmnI | GCTCC | 4 cut(s) | 574, 769, 777, 1279 |
| Lsp1109I | GCAGC | 3 cut(s) | 395, 796, 1229 |
| LweI | GCATC | 4 cut(s) | 360, 361, 471, 821 |
| MabI | ACCWGGT | 1 cut(s) | 551 |
| MaeI | CTAG | 1 cut(s) | 438 |
| MaeII | ACGT | 5 cut(s) | 148, 231, 359, 1021, 1323 |
| MaeIII | GTNAC | 4 cut(s) | 675, 915, 1099, 1186 |
| MboII | GAAGA | 6 cut(s) | 621, 941, 1087, 1244, 1257, 1297 |
| MfeI | CAATTG | 1 cut(s) | 377 |
| MflI | RGATCY | 3 cut(s) | 70, 293, 942 |
| MhlI | GDGCHC | 2 cut(s) | 774, 1027 |
| MluCI | AATT | 5 cut(s) | 25, 237, 250, 377, 845 |
| MlyI | GAGTC | 1 cut(s) | 1183 |
| MmeI | TCCRAC | 3 cut(s) | 501, 582, 1309 |
| MseI | TTAA | 2 cut(s) | 753, 1211 |
| MslI | CAYNNNNRTG | 1 cut(s) | 270 |
| MspA1I | CMGCKG | 2 cut(s) | 344, 949 |
| MspI | CCGG | 2 cut(s) | 318, 1277 |
| MspR9I | CCNGG | 4 cut(s) | 204, 553, 776, 1278 |
| MunI | CAATTG | 1 cut(s) | 377 |
| MvaI | CCWGG | 3 cut(s) | 204, 553, 776 |
| MvnI | CGCG | 1 cut(s) | 337 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 1031 |
| NciI | CCSGG | 1 cut(s) | 1278 |
| NlaIII | CATG | 4 cut(s) | 269, 783, 1145, 1201 |
| NlaIV | GGNNCC | 5 cut(s) | 295, 648, 944, 1147, 1281 |
| NmeAIII | GCCGAG | 1 cut(s) | 56 |
| NmuCI | GTSAC | 2 cut(s) | 1099, 1186 |
| NspI | RCATGY | 1 cut(s) | 269 |
| NspV | TTCGAA | 1 cut(s) | 10 |
| PfeI | GAWTC | 5 cut(s) | 12, 140, 197, 906, 1201 |
| PkrI | GCNGC | 3 cut(s) | 385, 786, 1219 |
| PleI | GAGTC | 1 cut(s) | 1183 |
| PpsI | GAGTC | 1 cut(s) | 1183 |
| Ppu21I | YACGTR | 1 cut(s) | 149 |
| Psp124BI | GAGCTC | 1 cut(s) | 774 |
| Psp6I | CCWGG | 3 cut(s) | 202, 551, 774 |
| PspGI | CCWGG | 3 cut(s) | 202, 551, 774 |
| PspN4I | GGNNCC | 5 cut(s) | 295, 648, 944, 1147, 1281 |
| PspPI | GGNCC | 7 cut(s) | 284, 555, 646, 951, 1146, 1280, 1331 |
| PsuI | RGATCY | 3 cut(s) | 70, 293, 942 |
| RsaI | GTAC | 3 cut(s) | 234, 655, 1345 |
| RsaNI | GTAC | 3 cut(s) | 233, 654, 1344 |
| RseI | CAYNNNNRTG | 1 cut(s) | 270 |
| SacI | GAGCTC | 1 cut(s) | 774 |
| SalI | GTCGAC | 1 cut(s) | 54 |
| SaqAI | TTAA | 2 cut(s) | 753, 1211 |
| SatI | GCNGC | 3 cut(s) | 384, 785, 1218 |
| Sau96I | GGNCC | 7 cut(s) | 284, 555, 646, 951, 1146, 1280, 1331 |
| SchI | GAGTC | 1 cut(s) | 1183 |
| ScrFI | CCNGG | 4 cut(s) | 204, 553, 776, 1278 |
| SduI | GDGCHC | 2 cut(s) | 774, 1027 |
| SexAI | ACCWGGT | 1 cut(s) | 551 |
| SfaNI | GCATC | 4 cut(s) | 360, 361, 471, 821 |
| SfuI | TTCGAA | 1 cut(s) | 10 |
| SgrDI | CGTCGACG | 1 cut(s) | 54 |
| SinI | GGWCC | 5 cut(s) | 284, 555, 951, 1146, 1331 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 270 |
| SmlI | CTYRAG | 2 cut(s) | 924, 1191 |
| SmoI | CTYRAG | 2 cut(s) | 924, 1191 |
| SnaBI | TACGTA | 1 cut(s) | 149 |
| Sse9I | AATT | 5 cut(s) | 25, 237, 250, 377, 845 |
| SsiI | CCGC | 6 cut(s) | 337, 344, 413, 881, 949, 1149 |
| SspMI | CTAG | 1 cut(s) | 438 |
| SstI | GAGCTC | 1 cut(s) | 774 |
| StyD4I | CCNGG | 4 cut(s) | 202, 551, 774, 1276 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 2 cut(s) | 675, 1174 |
| TaiI | ACGT | 5 cut(s) | 151, 234, 362, 1024, 1326 |
| TaqI | TCGA | 8 cut(s) | 10, 55, 138, 355, 864, 904, 1027, 1073 |
| TasI | AATT | 5 cut(s) | 25, 237, 250, 377, 845 |
| TatI | WGTACW | 2 cut(s) | 653, 1343 |
| TfiI | GAWTC | 5 cut(s) | 12, 140, 197, 906, 1201 |
| Tru1I | TTAA | 2 cut(s) | 753, 1211 |
| Tru9I | TTAA | 2 cut(s) | 753, 1211 |
| TscAI | CASTG | 2 cut(s) | 678, 713 |
| TseFI | GTSAC | 2 cut(s) | 1099, 1186 |
| TseI | GCWGC | 3 cut(s) | 383, 784, 1217 |
| Tsp45I | GTSAC | 2 cut(s) | 1099, 1186 |
| TspDTI | ATGAA | 7 cut(s) | 210, 239, 858, 989, 1130, 1214, 1245 |
| TspGWI | ACGGA | 1 cut(s) | 794 |
| TspRI | CASTG | 2 cut(s) | 678, 713 |
| VpaK11BI | GGWCC | 5 cut(s) | 284, 555, 951, 1146, 1331 |
| XceI | RCATGY | 1 cut(s) | 269 |
| XmiI | GTMKAC | 1 cut(s) | 55 |
| XspI | CTAG | 1 cut(s) | 438 |