ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 34 - 132 | 4.5e-06 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 380, 388 |
| AclI | AACGTT | 1 cut(s) | 355 |
| AclWI | GGATC | 3 cut(s) | 369, 419, 432 |
| AcvI | CACGTG | 1 cut(s) | 330 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 126, 180, 181 |
| AflIII | ACRYGT | 1 cut(s) | 43 |
| AgsI | TTSAA | 1 cut(s) | 202 |
| AjnI | CCWGG | 1 cut(s) | 137 |
| AluBI | AGCT | 2 cut(s) | 266, 385 |
| AluI | AGCT | 2 cut(s) | 266, 385 |
| Alw26I | GTCTC | 2 cut(s) | 58, 78 |
| AlwI | GGATC | 3 cut(s) | 369, 419, 432 |
| ApeKI | GCWGC | 3 cut(s) | 65, 161, 385 |
| AspLEI | GCGC | 1 cut(s) | 166 |
| AsuHPI | GGTGA | 1 cut(s) | 206 |
| AsuNHI | GCTAGC | 1 cut(s) | 250 |
| BamHI | GGATCC | 1 cut(s) | 424 |
| BbrPI | CACGTG | 1 cut(s) | 330 |
| BbvI | GCAGC | 3 cut(s) | 52, 173, 372 |
| BccI | CCATC | 1 cut(s) | 277 |
| BceAI | ACGGC | 1 cut(s) | 393 |
| BciT130I | CCWGG | 1 cut(s) | 139 |
| BclI | TGATCA | 1 cut(s) | 337 |
| BcoDI | GTCTC | 2 cut(s) | 58, 78 |
| BfaI | CTAG | 2 cut(s) | 216, 251 |
| BfmI | CTRYAG | 1 cut(s) | 66 |
| BisI | GCNGC | 3 cut(s) | 66, 162, 386 |
| BlsI | GCNGC | 3 cut(s) | 67, 163, 387 |
| Bme1390I | CCNGG | 1 cut(s) | 139 |
| BmiI | GGNNCC | 1 cut(s) | 426 |
| BmrFI | CCNGG | 1 cut(s) | 139 |
| BmsI | GCATC | 1 cut(s) | 138 |
| BmtI | GCTAGC | 1 cut(s) | 254 |
| BsaAI | YACGTR | 1 cut(s) | 330 |
| BsaI | GGTCTC | 1 cut(s) | 78 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 179 |
| BsaWI | WCCGGW | 1 cut(s) | 314 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 126, 180, 181 |
| Bse1I | ACTGG | 2 cut(s) | 100, 162 |
| BseBI | CCWGG | 1 cut(s) | 139 |
| BseDI | CCNNGG | 2 cut(s) | 138, 179 |
| BseGI | GGATG | 2 cut(s) | 13, 170 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 126, 180, 181 |
| BseNI | ACTGG | 2 cut(s) | 100, 162 |
| BseXI | GCAGC | 3 cut(s) | 52, 173, 372 |
| Bsh1285I | CGRYCG | 1 cut(s) | 127 |
| BsiEI | CGRYCG | 1 cut(s) | 127 |
| BsiSI | CCGG | 1 cut(s) | 315 |
| BslFI | GGGAC | 1 cut(s) | 404 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 126, 180, 181 |
| BsmAI | GTCTC | 2 cut(s) | 58, 78 |
| BsmFI | GGGAC | 1 cut(s) | 404 |
| Bso31I | GGTCTC | 1 cut(s) | 78 |
| Bsp143I | GATC | 4 cut(s) | 124, 337, 361, 424 |
| Bsp19I | CCATGG | 1 cut(s) | 179 |
| BspACI | CCGC | 2 cut(s) | 380, 388 |
| BspLI | GGNNCC | 1 cut(s) | 426 |
| BspMAI | CTGCAG | 1 cut(s) | 70 |
| BspOI | GCTAGC | 1 cut(s) | 254 |
| BspPI | GGATC | 3 cut(s) | 369, 419, 432 |
| BspTNI | GGTCTC | 1 cut(s) | 78 |
| BsrI | ACTGG | 2 cut(s) | 100, 162 |
| BssECI | CCNNGG | 2 cut(s) | 138, 179 |
| BssMI | GATC | 4 cut(s) | 124, 337, 361, 424 |
| BssT1I | CCWWGG | 1 cut(s) | 179 |
| Bst2UI | CCWGG | 1 cut(s) | 139 |
| BstBAI | YACGTR | 1 cut(s) | 330 |
| BstC8I | GCNNGC | 2 cut(s) | 252, 264 |
| BstDEI | CTNAG | 2 cut(s) | 348, 402 |
| BstDSI | CCRYGG | 1 cut(s) | 179 |
| BstF5I | GGATG | 2 cut(s) | 13, 170 |
| BstHHI | GCGC | 1 cut(s) | 166 |
| BstKTI | GATC | 4 cut(s) | 127, 340, 364, 427 |
| BstMAI | GTCTC | 2 cut(s) | 58, 78 |
| BstMBI | GATC | 4 cut(s) | 124, 337, 361, 424 |
| BstMCI | CGRYCG | 1 cut(s) | 127 |
| BstNI | CCWGG | 1 cut(s) | 139 |
| BstNSI | RCATGY | 1 cut(s) | 47 |
| BstSCI | CCNGG | 1 cut(s) | 137 |
| BstSFI | CTRYAG | 1 cut(s) | 66 |
| BstV1I | GCAGC | 3 cut(s) | 52, 173, 372 |
| BstX2I | RGATCY | 1 cut(s) | 424 |
| BstYI | RGATCY | 1 cut(s) | 424 |
| BtgI | CCRYGG | 1 cut(s) | 179 |
| BtsCI | GGATG | 2 cut(s) | 13, 170 |
| Cac8I | GCNNGC | 2 cut(s) | 252, 264 |
| CfoI | GCGC | 1 cut(s) | 166 |
| CviAII | CATG | 2 cut(s) | 44, 180 |
| CviJI | RGCY | 6 cut(s) | 65, 250, 266, 278, 321, 385 |
| CviKI_1 | RGCY | 6 cut(s) | 65, 250, 266, 278, 321, 385 |
| DdeI | CTNAG | 2 cut(s) | 348, 402 |
| DpnI | GATC | 4 cut(s) | 126, 339, 363, 426 |
| DpnII | GATC | 4 cut(s) | 124, 337, 361, 424 |
| EciI | GGCGGA | 1 cut(s) | 395 |
| Eco130I | CCWWGG | 1 cut(s) | 179 |
| Eco31I | GGTCTC | 1 cut(s) | 78 |
| Eco72I | CACGTG | 1 cut(s) | 330 |
| EcoRII | CCWGG | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 179 |
| ErhI | CCWWGG | 1 cut(s) | 179 |
| FaeI | CATG | 2 cut(s) | 47, 183 |
| FaqI | GGGAC | 1 cut(s) | 404 |
| FatI | CATG | 2 cut(s) | 43, 179 |
| FauI | CCCGC | 1 cut(s) | 381 |
| FbaI | TGATCA | 1 cut(s) | 337 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 162, 386 |
| FokI | GGATG | 2 cut(s) | 20, 157 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 162, 386 |
| FspBI | CTAG | 2 cut(s) | 216, 251 |
| GlaI | GCGC | 1 cut(s) | 165 |
| GluI | GCNGC | 3 cut(s) | 66, 162, 386 |
| HapII | CCGG | 1 cut(s) | 315 |
| HhaI | GCGC | 1 cut(s) | 166 |
| Hin1II | CATG | 2 cut(s) | 47, 183 |
| Hin6I | GCGC | 1 cut(s) | 164 |
| HinP1I | GCGC | 1 cut(s) | 164 |
| HincII | GTYRAC | 1 cut(s) | 93 |
| HindII | GTYRAC | 1 cut(s) | 93 |
| HindIII | AAGCTT | 1 cut(s) | 264 |
| HinfI | GANTC | 3 cut(s) | 130, 208, 415 |
| HpaI | GTTAAC | 1 cut(s) | 93 |
| HpaII | CCGG | 1 cut(s) | 315 |
| HphI | GGTGA | 1 cut(s) | 206 |
| Hpy166II | GTNNAC | 1 cut(s) | 93 |
| Hpy188I | TCNGA | 4 cut(s) | 78, 129, 232, 345 |
| Hpy8I | GTNNAC | 1 cut(s) | 93 |
| HpyAV | CCTTC | 1 cut(s) | 227 |
| HpyCH4IV | ACGT | 2 cut(s) | 329, 355 |
| HpyCH4V | TGCA | 3 cut(s) | 68, 113, 262 |
| HpyF3I | CTNAG | 2 cut(s) | 348, 402 |
| HpySE526I | ACGT | 2 cut(s) | 329, 355 |
| Hsp92II | CATG | 2 cut(s) | 47, 183 |
| HspAI | GCGC | 1 cut(s) | 164 |
| Ksp22I | TGATCA | 1 cut(s) | 337 |
| KspAI | GTTAAC | 1 cut(s) | 93 |
| Kzo9I | GATC | 4 cut(s) | 124, 337, 361, 424 |
| LmnI | GCTCC | 1 cut(s) | 382 |
| LpnPI | CCDG | 8 cut(s) | 54, 81, 124, 133, 143, 151, 188, 328 |
| Lsp1109I | GCAGC | 3 cut(s) | 52, 173, 372 |
| LweI | GCATC | 1 cut(s) | 138 |
| MaeI | CTAG | 2 cut(s) | 216, 251 |
| MaeII | ACGT | 2 cut(s) | 329, 355 |
| MalI | GATC | 4 cut(s) | 126, 339, 363, 426 |
| MboI | GATC | 4 cut(s) | 124, 337, 361, 424 |
| MflI | RGATCY | 1 cut(s) | 424 |
| MlyI | GAGTC | 2 cut(s) | 139, 409 |
| MnlI | CCTC | 4 cut(s) | 81, 240, 268, 418 |
| MseI | TTAA | 1 cut(s) | 92 |
| MslI | CAYNNNNRTG | 1 cut(s) | 48 |
| MspI | CCGG | 1 cut(s) | 315 |
| MspR9I | CCNGG | 1 cut(s) | 139 |
| MvaI | CCWGG | 1 cut(s) | 139 |
| NcoI | CCATGG | 1 cut(s) | 179 |
| NdeII | GATC | 4 cut(s) | 124, 337, 361, 424 |
| NheI | GCTAGC | 1 cut(s) | 250 |
| NlaIII | CATG | 2 cut(s) | 47, 183 |
| NlaIV | GGNNCC | 1 cut(s) | 426 |
| NspI | RCATGY | 1 cut(s) | 47 |
| PciI | ACATGT | 1 cut(s) | 43 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 361 |
| PfeI | GAWTC | 1 cut(s) | 208 |
| PkrI | GCNGC | 3 cut(s) | 67, 163, 387 |
| Ple19I | CGATCG | 1 cut(s) | 127 |
| PleI | GAGTC | 2 cut(s) | 138, 409 |
| PmaCI | CACGTG | 1 cut(s) | 330 |
| PmlI | CACGTG | 1 cut(s) | 330 |
| PpsI | GAGTC | 2 cut(s) | 138, 409 |
| Ppu21I | YACGTR | 1 cut(s) | 330 |
| PscI | ACATGT | 1 cut(s) | 43 |
| Psp1406I | AACGTT | 1 cut(s) | 355 |
| Psp6I | CCWGG | 1 cut(s) | 137 |
| PspCI | CACGTG | 1 cut(s) | 330 |
| PspGI | CCWGG | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 1 cut(s) | 426 |
| PstI | CTGCAG | 1 cut(s) | 70 |
| PsuI | RGATCY | 1 cut(s) | 424 |
| PvuI | CGATCG | 1 cut(s) | 127 |
| RseI | CAYNNNNRTG | 1 cut(s) | 48 |
| SaqAI | TTAA | 1 cut(s) | 92 |
| SatI | GCNGC | 3 cut(s) | 66, 162, 386 |
| Sau3AI | GATC | 4 cut(s) | 124, 337, 361, 424 |
| SchI | GAGTC | 2 cut(s) | 139, 409 |
| ScrFI | CCNGG | 1 cut(s) | 139 |
| SetI | ASST | 7 cut(s) | 92, 140, 238, 268, 332, 358, 387 |
| SfaNI | GCATC | 1 cut(s) | 138 |
| SfcI | CTRYAG | 1 cut(s) | 66 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 48 |
| SsiI | CCGC | 2 cut(s) | 380, 388 |
| SspMI | CTAG | 2 cut(s) | 216, 251 |
| StyD4I | CCNGG | 1 cut(s) | 137 |
| StyI | CCWWGG | 1 cut(s) | 179 |
| TaiI | ACGT | 2 cut(s) | 332, 358 |
| TaqI | TCGA | 2 cut(s) | 48, 364 |
| TfiI | GAWTC | 1 cut(s) | 208 |
| Tru1I | TTAA | 1 cut(s) | 92 |
| Tru9I | TTAA | 1 cut(s) | 92 |
| TseI | GCWGC | 3 cut(s) | 65, 161, 385 |
| TspDTI | ATGAA | 2 cut(s) | 8, 17 |
| XceI | RCATGY | 1 cut(s) | 47 |
| XspI | CTAG | 2 cut(s) | 216, 251 |