ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 2 - 176 | 1.5e-08 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 682 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 366 |
| Acc36I | ACCTGC | 1 cut(s) | 682 |
| AccBSI | CCGCTC | 1 cut(s) | 863 |
| AccI | GTMKAC | 1 cut(s) | 352 |
| AciI | CCGC | 2 cut(s) | 791, 863 |
| AclI | AACGTT | 1 cut(s) | 469 |
| AclWI | GGATC | 1 cut(s) | 637 |
| AcoI | YGGCCR | 3 cut(s) | 281, 431, 838 |
| AcsI | RAATTY | 4 cut(s) | 254, 422, 561, 772 |
| AfaI | GTAC | 1 cut(s) | 346 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 230 |
| AflII | CTTAAG | 1 cut(s) | 410 |
| AflIII | ACRYGT | 1 cut(s) | 130 |
| AgsI | TTSAA | 5 cut(s) | 422, 505, 568, 602, 727 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 764, 796 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 533, 565 |
| AluBI | AGCT | 1 cut(s) | 571 |
| AluI | AGCT | 1 cut(s) | 571 |
| Alw26I | GTCTC | 1 cut(s) | 536 |
| AlwI | GGATC | 1 cut(s) | 637 |
| Ama87I | CYCGRG | 1 cut(s) | 572 |
| AoxI | GGCC | 3 cut(s) | 281, 431, 838 |
| ApeKI | GCWGC | 1 cut(s) | 580 |
| ApoI | RAATTY | 4 cut(s) | 254, 422, 561, 772 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 783 |
| AsuC2I | CCSGG | 1 cut(s) | 156 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| AvaI | CYCGRG | 1 cut(s) | 572 |
| BalI | TGGCCA | 2 cut(s) | 433, 840 |
| BanII | GRGCYC | 1 cut(s) | 517 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 860, 892 |
| BauI | CACGAG | 1 cut(s) | 516 |
| BbsI | GAAGAC | 1 cut(s) | 624 |
| BbvI | GCAGC | 1 cut(s) | 567 |
| BccI | CCATC | 3 cut(s) | 161, 451, 854 |
| BciVI | GTATCC | 1 cut(s) | 816 |
| BcnI | CCSGG | 1 cut(s) | 156 |
| BcoDI | GTCTC | 1 cut(s) | 536 |
| BfaI | CTAG | 1 cut(s) | 596 |
| BfrI | CTTAAG | 1 cut(s) | 410 |
| BfuAI | ACCTGC | 1 cut(s) | 682 |
| BfuI | GTATCC | 1 cut(s) | 816 |
| BisI | GCNGC | 1 cut(s) | 581 |
| BlpI | GCTNAGC | 1 cut(s) | 747 |
| BlsI | GCNGC | 1 cut(s) | 582 |
| Bme1390I | CCNGG | 1 cut(s) | 156 |
| BmeT110I | CYCGRG | 1 cut(s) | 572 |
| BmrFI | CCNGG | 1 cut(s) | 156 |
| BmrI | ACTGGG | 1 cut(s) | 59 |
| BmsI | GCATC | 1 cut(s) | 250 |
| BmuI | ACTGGG | 1 cut(s) | 59 |
| BpiI | GAAGAC | 1 cut(s) | 624 |
| BpmI | CTGGAG | 2 cut(s) | 633, 879 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 747 |
| BpuEI | CTTGAG | 1 cut(s) | 752 |
| BpuMI | CCSGG | 1 cut(s) | 156 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 533, 563 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 230 |
| Bse118I | RCCGGY | 1 cut(s) | 283 |
| Bse1I | ACTGG | 3 cut(s) | 54, 211, 858 |
| Bse3DI | GCAATG | 2 cut(s) | 61, 755 |
| BseGI | GGATG | 3 cut(s) | 151, 462, 799 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 230 |
| BseMI | GCAATG | 2 cut(s) | 61, 755 |
| BseMII | CTCAG | 1 cut(s) | 188 |
| BseNI | ACTGG | 3 cut(s) | 54, 211, 858 |
| BseXI | GCAGC | 1 cut(s) | 567 |
| BshFI | GGCC | 3 cut(s) | 283, 433, 840 |
| BsiHKCI | CYCGRG | 1 cut(s) | 572 |
| BsiSI | CCGG | 3 cut(s) | 155, 224, 284 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 230 |
| BsmAI | GTCTC | 1 cut(s) | 536 |
| BsnI | GGCC | 3 cut(s) | 283, 433, 840 |
| BsoBI | CYCGRG | 1 cut(s) | 572 |
| Bsp1286I | GDGCHC | 1 cut(s) | 517 |
| Bsp143I | GATC | 2 cut(s) | 528, 629 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 747 |
| BspACI | CCGC | 2 cut(s) | 791, 863 |
| BspANI | GGCC | 3 cut(s) | 283, 433, 840 |
| BspCNI | CTCAG | 1 cut(s) | 189 |
| BspMI | ACCTGC | 1 cut(s) | 682 |
| BspPI | GGATC | 1 cut(s) | 637 |
| BspTI | CTTAAG | 1 cut(s) | 410 |
| BsrBI | CCGCTC | 1 cut(s) | 863 |
| BsrDI | GCAATG | 2 cut(s) | 61, 755 |
| BsrFI | RCCGGY | 1 cut(s) | 283 |
| BsrI | ACTGG | 3 cut(s) | 54, 211, 858 |
| BssAI | RCCGGY | 1 cut(s) | 283 |
| BssMI | GATC | 2 cut(s) | 528, 629 |
| BssSI | CACGAG | 1 cut(s) | 516 |
| Bst2BI | CACGAG | 1 cut(s) | 516 |
| Bst4CI | ACNGT | 2 cut(s) | 363, 381 |
| Bst6I | CTCTTC | 1 cut(s) | 185 |
| BstAFI | CTTAAG | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 1 cut(s) | 285 |
| BstDEI | CTNAG | 5 cut(s) | 9, 197, 356, 686, 747 |
| BstF5I | GGATG | 3 cut(s) | 151, 462, 799 |
| BstKTI | GATC | 2 cut(s) | 531, 632 |
| BstMAI | GTCTC | 1 cut(s) | 536 |
| BstMBI | GATC | 2 cut(s) | 528, 629 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 577, 757, 908 |
| BstNSI | RCATGY | 2 cut(s) | 134, 740 |
| BstSCI | CCNGG | 1 cut(s) | 154 |
| BstV1I | GCAGC | 1 cut(s) | 567 |
| BstV2I | GAAGAC | 1 cut(s) | 624 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 853 |
| BsuI | GTATCC | 1 cut(s) | 816 |
| BsuRI | GGCC | 3 cut(s) | 283, 433, 840 |
| BtgZI | GCGATG | 1 cut(s) | 41 |
| BtsCI | GGATG | 3 cut(s) | 151, 462, 799 |
| BtsIMutI | CAGTG | 1 cut(s) | 47 |
| BveI | ACCTGC | 1 cut(s) | 682 |
| Cac8I | GCNNGC | 1 cut(s) | 285 |
| Cfr10I | RCCGGY | 1 cut(s) | 283 |
| Csp6I | GTAC | 1 cut(s) | 345 |
| CviAII | CATG | 4 cut(s) | 131, 429, 737, 912 |
| CviQI | GTAC | 1 cut(s) | 345 |
| DdeI | CTNAG | 5 cut(s) | 9, 197, 356, 686, 747 |
| DpnI | GATC | 2 cut(s) | 530, 631 |
| DpnII | GATC | 2 cut(s) | 528, 629 |
| DraI | TTTAAA | 1 cut(s) | 489 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 366 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 366 |
| EaeI | YGGCCR | 3 cut(s) | 281, 431, 838 |
| Eam1104I | CTCTTC | 1 cut(s) | 185 |
| EarI | CTCTTC | 1 cut(s) | 185 |
| Eco24I | GRGCYC | 1 cut(s) | 517 |
| Eco88I | CYCGRG | 1 cut(s) | 572 |
| EcoRI | GAATTC | 1 cut(s) | 422 |
| EcoT38I | GRGCYC | 1 cut(s) | 517 |
| FaeI | CATG | 4 cut(s) | 134, 432, 740, 915 |
| FatI | CATG | 4 cut(s) | 130, 428, 736, 911 |
| FblI | GTMKAC | 1 cut(s) | 352 |
| Fnu4HI | GCNGC | 1 cut(s) | 581 |
| FokI | GGATG | 3 cut(s) | 158, 469, 806 |
| FriOI | GRGCYC | 1 cut(s) | 517 |
| Fsp4HI | GCNGC | 1 cut(s) | 581 |
| FspBI | CTAG | 1 cut(s) | 596 |
| GluI | GCNGC | 1 cut(s) | 581 |
| GsuI | CTGGAG | 2 cut(s) | 633, 879 |
| HaeIII | GGCC | 3 cut(s) | 283, 433, 840 |
| HapII | CCGG | 3 cut(s) | 155, 224, 284 |
| Hin1II | CATG | 4 cut(s) | 134, 432, 740, 915 |
| HincII | GTYRAC | 2 cut(s) | 353, 524 |
| HindII | GTYRAC | 2 cut(s) | 353, 524 |
| HinfI | GANTC | 1 cut(s) | 554 |
| HpaII | CCGG | 3 cut(s) | 155, 224, 284 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 5 cut(s) | 47, 353, 441, 524, 877 |
| Hpy188I | TCNGA | 2 cut(s) | 466, 559 |
| Hpy188III | TCNNGA | 2 cut(s) | 663, 769 |
| Hpy8I | GTNNAC | 5 cut(s) | 47, 353, 441, 524, 877 |
| Hpy99I | CGWCG | 2 cut(s) | 232, 267 |
| HpyAV | CCTTC | 3 cut(s) | 112, 620, 892 |
| HpyCH4III | ACNGT | 2 cut(s) | 363, 381 |
| HpyCH4IV | ACGT | 1 cut(s) | 469 |
| HpyCH4V | TGCA | 2 cut(s) | 66, 671 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 577, 757, 908 |
| HpyF3I | CTNAG | 5 cut(s) | 9, 197, 356, 686, 747 |
| HpySE526I | ACGT | 1 cut(s) | 469 |
| Hsp92II | CATG | 4 cut(s) | 134, 432, 740, 915 |
| KroI | GCCGGC | 1 cut(s) | 283 |
| KroNI | GCCGGC | 1 cut(s) | 285 |
| Kzo9I | GATC | 2 cut(s) | 528, 629 |
| LmnI | GCTCC | 1 cut(s) | 860 |
| Lsp1109I | GCAGC | 1 cut(s) | 567 |
| LweI | GCATC | 1 cut(s) | 250 |
| MaeI | CTAG | 1 cut(s) | 596 |
| MaeII | ACGT | 1 cut(s) | 469 |
| MaeIII | GTNAC | 2 cut(s) | 53, 689 |
| MalI | GATC | 2 cut(s) | 530, 631 |
| MbiI | CCGCTC | 1 cut(s) | 863 |
| MboI | GATC | 2 cut(s) | 528, 629 |
| MboII | GAAGA | 5 cut(s) | 25, 202, 629, 635, 880 |
| MhlI | GDGCHC | 1 cut(s) | 517 |
| MlsI | TGGCCA | 2 cut(s) | 433, 840 |
| MluCI | AATT | 7 cut(s) | 35, 201, 254, 422, 561, 772, 779 |
| MluNI | TGGCCA | 2 cut(s) | 433, 840 |
| MnlI | CCTC | 8 cut(s) | 16, 115, 186, 231, 688, 762, 874, 883 |
| Mox20I | TGGCCA | 2 cut(s) | 433, 840 |
| MroNI | GCCGGC | 1 cut(s) | 283 |
| MroXI | GAANNNNTTC | 1 cut(s) | 783 |
| MscI | TGGCCA | 2 cut(s) | 433, 840 |
| MseI | TTAA | 6 cut(s) | 33, 315, 384, 411, 488, 885 |
| MslI | CAYNNNNRTG | 2 cut(s) | 112, 741 |
| Msp20I | TGGCCA | 2 cut(s) | 433, 840 |
| MspCI | CTTAAG | 1 cut(s) | 410 |
| MspI | CCGG | 3 cut(s) | 155, 224, 284 |
| MspR9I | CCNGG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 577, 757, 908 |
| NaeI | GCCGGC | 1 cut(s) | 285 |
| NciI | CCSGG | 1 cut(s) | 156 |
| NdeII | GATC | 2 cut(s) | 528, 629 |
| NgoMIV | GCCGGC | 1 cut(s) | 283 |
| NlaIII | CATG | 4 cut(s) | 134, 432, 740, 915 |
| NspI | RCATGY | 2 cut(s) | 134, 740 |
| PaqCI | CACCTGC | 1 cut(s) | 682 |
| PciI | ACATGT | 1 cut(s) | 130 |
| PdiI | GCCGGC | 1 cut(s) | 285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 783 |
| PfeI | GAWTC | 1 cut(s) | 554 |
| PkrI | GCNGC | 1 cut(s) | 582 |
| PscI | ACATGT | 1 cut(s) | 130 |
| Psp1406I | AACGTT | 1 cut(s) | 469 |
| RsaI | GTAC | 1 cut(s) | 346 |
| RsaNI | GTAC | 1 cut(s) | 345 |
| RseI | CAYNNNNRTG | 2 cut(s) | 112, 741 |
| SalI | GTCGAC | 1 cut(s) | 351 |
| SaqAI | TTAA | 6 cut(s) | 33, 315, 384, 411, 488, 885 |
| SatI | GCNGC | 1 cut(s) | 581 |
| Sau3AI | GATC | 2 cut(s) | 528, 629 |
| ScrFI | CCNGG | 1 cut(s) | 156 |
| SduI | GDGCHC | 1 cut(s) | 517 |
| SetI | ASST | 6 cut(s) | 97, 393, 472, 573, 676, 885 |
| SfaNI | GCATC | 1 cut(s) | 250 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 112, 741 |
| SmlI | CTYRAG | 2 cut(s) | 410, 767 |
| SmoI | CTYRAG | 2 cut(s) | 410, 767 |
| Sse9I | AATT | 7 cut(s) | 35, 201, 254, 422, 561, 772, 779 |
| SsiI | CCGC | 2 cut(s) | 791, 863 |
| SspMI | CTAG | 1 cut(s) | 596 |
| StyD4I | CCNGG | 1 cut(s) | 154 |
| TaaI | ACNGT | 2 cut(s) | 363, 381 |
| TaiI | ACGT | 1 cut(s) | 472 |
| TaqI | TCGA | 3 cut(s) | 352, 552, 632 |
| TasI | AATT | 7 cut(s) | 35, 201, 254, 422, 561, 772, 779 |
| TfiI | GAWTC | 1 cut(s) | 554 |
| Tru1I | TTAA | 6 cut(s) | 33, 315, 384, 411, 488, 885 |
| Tru9I | TTAA | 6 cut(s) | 33, 315, 384, 411, 488, 885 |
| TscAI | CASTG | 1 cut(s) | 54 |
| TseI | GCWGC | 1 cut(s) | 580 |
| TspDTI | ATGAA | 2 cut(s) | 414, 577 |
| TspRI | CASTG | 1 cut(s) | 54 |
| Vha464I | CTTAAG | 1 cut(s) | 410 |
| XapI | RAATTY | 4 cut(s) | 254, 422, 561, 772 |
| XceI | RCATGY | 2 cut(s) | 134, 740 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 441 |
| XmiI | GTMKAC | 1 cut(s) | 352 |
| XmnI | GAANNNNTTC | 1 cut(s) | 783 |
| XspI | CTAG | 1 cut(s) | 596 |