ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 68 |
| AccII | CGCG | 1 cut(s) | 132 |
| AciI | CCGC | 1 cut(s) | 106 |
| AcuI | CTGAAG | 1 cut(s) | 345 |
| AgsI | TTSAA | 1 cut(s) | 260 |
| AluBI | AGCT | 1 cut(s) | 8 |
| AluI | AGCT | 1 cut(s) | 8 |
| Ama87I | CYCGRG | 1 cut(s) | 169 |
| AoxI | GGCC | 1 cut(s) | 18 |
| ApeKI | GCWGC | 2 cut(s) | 60, 391 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 334, 366 |
| AspLEI | GCGC | 1 cut(s) | 132 |
| AspS9I | GGNCC | 1 cut(s) | 331 |
| AsuHPI | GGTGA | 1 cut(s) | 158 |
| AvaI | CYCGRG | 1 cut(s) | 169 |
| AvaII | GGWCC | 1 cut(s) | 331 |
| BaeGI | GKGCMC | 1 cut(s) | 274 |
| BbvI | GCAGC | 2 cut(s) | 72, 403 |
| BccI | CCATC | 1 cut(s) | 303 |
| BceAI | ACGGC | 2 cut(s) | 73, 290 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 233, 267 |
| BciVI | GTATCC | 1 cut(s) | 313 |
| BclI | TGATCA | 2 cut(s) | 79, 181 |
| BfuI | GTATCC | 1 cut(s) | 313 |
| BisI | GCNGC | 2 cut(s) | 61, 392 |
| BlsI | GCNGC | 2 cut(s) | 62, 393 |
| Bme18I | GGWCC | 1 cut(s) | 331 |
| BmeT110I | CYCGRG | 1 cut(s) | 169 |
| BmgT120I | GGNCC | 1 cut(s) | 331 |
| BmiI | GGNNCC | 2 cut(s) | 332, 333 |
| BoxI | GACNNNNGTC | 1 cut(s) | 108 |
| BseGI | GGATG | 1 cut(s) | 314 |
| BseSI | GKGCMC | 1 cut(s) | 274 |
| BseXI | GCAGC | 2 cut(s) | 72, 403 |
| Bsh1236I | CGCG | 1 cut(s) | 132 |
| BshFI | GGCC | 1 cut(s) | 20 |
| BsiHKCI | CYCGRG | 1 cut(s) | 169 |
| BslFI | GGGAC | 1 cut(s) | 344 |
| BsmFI | GGGAC | 1 cut(s) | 344 |
| BsmI | GAATGC | 1 cut(s) | 145 |
| BsnI | GGCC | 1 cut(s) | 20 |
| BsoBI | CYCGRG | 1 cut(s) | 169 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp143I | GATC | 2 cut(s) | 79, 181 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspANI | GGCC | 1 cut(s) | 20 |
| BspFNI | CGCG | 1 cut(s) | 132 |
| BspLI | GGNNCC | 2 cut(s) | 332, 333 |
| BssMI | GATC | 2 cut(s) | 79, 181 |
| BssNAI | GTATAC | 1 cut(s) | 69 |
| Bst1107I | GTATAC | 1 cut(s) | 69 |
| Bst4CI | ACNGT | 2 cut(s) | 99, 264 |
| Bst6I | CTCTTC | 1 cut(s) | 233 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstF5I | GGATG | 1 cut(s) | 314 |
| BstFNI | CGCG | 1 cut(s) | 132 |
| BstHHI | GCGC | 1 cut(s) | 132 |
| BstKTI | GATC | 2 cut(s) | 82, 184 |
| BstMBI | GATC | 2 cut(s) | 79, 181 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 108 |
| BstSLI | GKGCMC | 1 cut(s) | 274 |
| BstUI | CGCG | 1 cut(s) | 132 |
| BstV1I | GCAGC | 2 cut(s) | 72, 403 |
| BstZ17I | GTATAC | 1 cut(s) | 69 |
| BsuI | GTATCC | 1 cut(s) | 313 |
| BsuRI | GGCC | 1 cut(s) | 20 |
| BtsCI | GGATG | 1 cut(s) | 314 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CfoI | GCGC | 1 cut(s) | 132 |
| Cfr13I | GGNCC | 1 cut(s) | 331 |
| CviAII | CATG | 2 cut(s) | 72, 387 |
| CviJI | RGCY | 5 cut(s) | 8, 20, 63, 293, 383 |
| CviKI_1 | RGCY | 5 cut(s) | 8, 20, 63, 293, 383 |
| DpnI | GATC | 2 cut(s) | 81, 183 |
| DpnII | GATC | 2 cut(s) | 79, 181 |
| Eam1104I | CTCTTC | 1 cut(s) | 233 |
| EarI | CTCTTC | 1 cut(s) | 233 |
| Eco47I | GGWCC | 1 cut(s) | 331 |
| Eco57I | CTGAAG | 1 cut(s) | 345 |
| Eco88I | CYCGRG | 1 cut(s) | 169 |
| EcoO109I | RGGNCCY | 1 cut(s) | 331 |
| FaeI | CATG | 2 cut(s) | 75, 390 |
| FaiI | YATR | 9 cut(s) | 47, 69, 73, 186, 246, 279, 338, 388, 396 |
| FaqI | GGGAC | 1 cut(s) | 344 |
| FatI | CATG | 2 cut(s) | 71, 386 |
| FbaI | TGATCA | 2 cut(s) | 79, 181 |
| FblI | GTMKAC | 1 cut(s) | 68 |
| Fnu4HI | GCNGC | 2 cut(s) | 61, 392 |
| FokI | GGATG | 1 cut(s) | 321 |
| Fsp4HI | GCNGC | 2 cut(s) | 61, 392 |
| GlaI | GCGC | 1 cut(s) | 131 |
| GluI | GCNGC | 2 cut(s) | 61, 392 |
| HaeIII | GGCC | 1 cut(s) | 20 |
| HhaI | GCGC | 1 cut(s) | 132 |
| Hin1II | CATG | 2 cut(s) | 75, 390 |
| Hin6I | GCGC | 1 cut(s) | 130 |
| HinP1I | GCGC | 1 cut(s) | 130 |
| HindIII | AAGCTT | 1 cut(s) | 6 |
| HinfI | GANTC | 1 cut(s) | 215 |
| HphI | GGTGA | 1 cut(s) | 158 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 191 |
| Hpy188I | TCNGA | 5 cut(s) | 14, 79, 87, 181, 303 |
| Hpy188III | TCNNGA | 1 cut(s) | 196 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 191 |
| HpyAV | CCTTC | 3 cut(s) | 85, 173, 320 |
| HpyCH4III | ACNGT | 2 cut(s) | 99, 264 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 221, 340 |
| Hsp92II | CATG | 2 cut(s) | 75, 390 |
| HspAI | GCGC | 1 cut(s) | 130 |
| KflI | GGGWCCC | 1 cut(s) | 331 |
| Ksp22I | TGATCA | 2 cut(s) | 79, 181 |
| Kzo9I | GATC | 2 cut(s) | 79, 181 |
| LpnPI | CCDG | 3 cut(s) | 127, 299, 354 |
| Lsp1109I | GCAGC | 2 cut(s) | 72, 403 |
| MalI | GATC | 2 cut(s) | 81, 183 |
| MboI | GATC | 2 cut(s) | 79, 181 |
| MboII | GAAGA | 1 cut(s) | 250 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MluCI | AATT | 1 cut(s) | 357 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MmeI | TCCRAC | 1 cut(s) | 215 |
| MnlI | CCTC | 4 cut(s) | 10, 187, 234, 283 |
| MseI | TTAA | 1 cut(s) | 360 |
| Mva1269I | GAATGC | 1 cut(s) | 145 |
| MvnI | CGCG | 1 cut(s) | 132 |
| NdeII | GATC | 2 cut(s) | 79, 181 |
| NlaIII | CATG | 2 cut(s) | 75, 390 |
| NlaIV | GGNNCC | 2 cut(s) | 332, 333 |
| PctI | GAATGC | 1 cut(s) | 145 |
| PkrI | GCNGC | 2 cut(s) | 62, 393 |
| PleI | GAGTC | 1 cut(s) | 209 |
| PpsI | GAGTC | 1 cut(s) | 209 |
| PpuMI | RGGWCCY | 1 cut(s) | 331 |
| PshAI | GACNNNNGTC | 1 cut(s) | 108 |
| Psp5II | RGGWCCY | 1 cut(s) | 331 |
| PspN4I | GGNNCC | 2 cut(s) | 332, 333 |
| PspPI | GGNCC | 1 cut(s) | 331 |
| PspPPI | RGGWCCY | 1 cut(s) | 331 |
| SaqAI | TTAA | 1 cut(s) | 360 |
| SatI | GCNGC | 2 cut(s) | 61, 392 |
| Sau3AI | GATC | 2 cut(s) | 79, 181 |
| Sau96I | GGNCC | 1 cut(s) | 331 |
| SchI | GAGTC | 1 cut(s) | 209 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SetI | ASST | 3 cut(s) | 10, 165, 348 |
| SinI | GGWCC | 1 cut(s) | 331 |
| Sse9I | AATT | 1 cut(s) | 357 |
| SsiI | CCGC | 1 cut(s) | 106 |
| TaaI | ACNGT | 2 cut(s) | 99, 264 |
| TaqI | TCGA | 2 cut(s) | 253, 412 |
| TasI | AATT | 1 cut(s) | 357 |
| Tru1I | TTAA | 1 cut(s) | 360 |
| Tru9I | TTAA | 1 cut(s) | 360 |
| TseI | GCWGC | 2 cut(s) | 60, 391 |
| VpaK11BI | GGWCC | 1 cut(s) | 331 |
| XmiI | GTMKAC | 1 cut(s) | 68 |