ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 470 |
| Acc36I | ACCTGC | 2 cut(s) | 144, 470 |
| AccII | CGCG | 1 cut(s) | 767 |
| AciI | CCGC | 2 cut(s) | 126, 338 |
| AclWI | GGATC | 1 cut(s) | 782 |
| AcsI | RAATTY | 2 cut(s) | 324, 752 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 153, 614 |
| AgsI | TTSAA | 6 cut(s) | 13, 300, 494, 532, 632, 757 |
| AjnI | CCWGG | 1 cut(s) | 75 |
| AluBI | AGCT | 2 cut(s) | 410, 707 |
| AluI | AGCT | 2 cut(s) | 410, 707 |
| Alw26I | GTCTC | 3 cut(s) | 76, 666, 732 |
| AlwI | GGATC | 1 cut(s) | 782 |
| AoxI | GGCC | 1 cut(s) | 37 |
| ApeKI | GCWGC | 1 cut(s) | 344 |
| ApoI | RAATTY | 2 cut(s) | 324, 752 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 82, 114, 341, 373 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 398 |
| AspLEI | GCGC | 1 cut(s) | 675 |
| AspS9I | GGNCC | 2 cut(s) | 365, 449 |
| AsuHPI | GGTGA | 4 cut(s) | 91, 299, 451, 598 |
| AvaII | GGWCC | 2 cut(s) | 365, 449 |
| BbvI | GCAGC | 1 cut(s) | 356 |
| BccI | CCATC | 2 cut(s) | 164, 591 |
| BciT130I | CCWGG | 1 cut(s) | 77 |
| BcoDI | GTCTC | 3 cut(s) | 76, 666, 732 |
| BfaI | CTAG | 3 cut(s) | 96, 453, 749 |
| BfmI | CTRYAG | 1 cut(s) | 463 |
| BfuAI | ACCTGC | 2 cut(s) | 144, 470 |
| BisI | GCNGC | 2 cut(s) | 126, 345 |
| BlsI | GCNGC | 2 cut(s) | 127, 346 |
| Bme1390I | CCNGG | 1 cut(s) | 77 |
| Bme18I | GGWCC | 2 cut(s) | 365, 449 |
| BmgT120I | GGNCC | 2 cut(s) | 365, 449 |
| BmrFI | CCNGG | 1 cut(s) | 77 |
| BmrI | ACTGGG | 1 cut(s) | 233 |
| BmsI | GCATC | 5 cut(s) | 13, 52, 331, 610, 814 |
| BmuI | ACTGGG | 1 cut(s) | 233 |
| BoxI | GACNNNNGTC | 2 cut(s) | 477, 744 |
| BpmI | CTGGAG | 3 cut(s) | 161, 381, 636 |
| BpuEI | CTTGAG | 1 cut(s) | 707 |
| Bsa29I | ATCGAT | 1 cut(s) | 541 |
| BsaI | GGTCTC | 1 cut(s) | 666 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 153, 614 |
| Bse1I | ACTGG | 1 cut(s) | 239 |
| Bse3DI | GCAATG | 1 cut(s) | 630 |
| BseBI | CCWGG | 1 cut(s) | 77 |
| BseCI | ATCGAT | 1 cut(s) | 541 |
| BseGI | GGATG | 4 cut(s) | 346, 602, 606, 805 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 153, 614 |
| BseMI | GCAATG | 1 cut(s) | 630 |
| BseMII | CTCAG | 1 cut(s) | 699 |
| BseNI | ACTGG | 1 cut(s) | 239 |
| BseRI | GAGGAG | 2 cut(s) | 169, 360 |
| BseXI | GCAGC | 1 cut(s) | 356 |
| BseYI | CCCAGC | 1 cut(s) | 683 |
| Bsh1236I | CGCG | 1 cut(s) | 767 |
| BshFI | GGCC | 1 cut(s) | 39 |
| BshVI | ATCGAT | 1 cut(s) | 541 |
| BsiSI | CCGG | 1 cut(s) | 403 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 153, 614 |
| BsmAI | GTCTC | 3 cut(s) | 76, 666, 732 |
| BsmBI | CGTCTC | 1 cut(s) | 732 |
| BsnI | GGCC | 1 cut(s) | 39 |
| Bso31I | GGTCTC | 1 cut(s) | 666 |
| Bsp143I | GATC | 2 cut(s) | 467, 774 |
| Bsp68I | TCGCGA | 1 cut(s) | 767 |
| BspACI | CCGC | 2 cut(s) | 126, 338 |
| BspANI | GGCC | 1 cut(s) | 39 |
| BspCNI | CTCAG | 1 cut(s) | 700 |
| BspDI | ATCGAT | 1 cut(s) | 541 |
| BspFNI | CGCG | 1 cut(s) | 767 |
| BspMAI | CTGCAG | 1 cut(s) | 467 |
| BspMI | ACCTGC | 2 cut(s) | 144, 470 |
| BspPI | GGATC | 1 cut(s) | 782 |
| BspTNI | GGTCTC | 1 cut(s) | 666 |
| BsrDI | GCAATG | 1 cut(s) | 630 |
| BsrI | ACTGG | 1 cut(s) | 239 |
| BssMI | GATC | 2 cut(s) | 467, 774 |
| Bst2UI | CCWGG | 1 cut(s) | 77 |
| Bst4CI | ACNGT | 2 cut(s) | 203, 814 |
| BstC8I | GCNNGC | 3 cut(s) | 408, 677, 681 |
| BstDEI | CTNAG | 1 cut(s) | 708 |
| BstF5I | GGATG | 4 cut(s) | 346, 602, 606, 805 |
| BstFNI | CGCG | 1 cut(s) | 767 |
| BstHHI | GCGC | 1 cut(s) | 675 |
| BstKTI | GATC | 2 cut(s) | 470, 777 |
| BstMAI | GTCTC | 3 cut(s) | 76, 666, 732 |
| BstMBI | GATC | 2 cut(s) | 467, 774 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 344, 620 |
| BstNI | CCWGG | 1 cut(s) | 77 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 477, 744 |
| BstSCI | CCNGG | 1 cut(s) | 75 |
| BstSFI | CTRYAG | 1 cut(s) | 463 |
| BstUI | CGCG | 1 cut(s) | 767 |
| BstV1I | GCAGC | 1 cut(s) | 356 |
| Bsu15I | ATCGAT | 1 cut(s) | 541 |
| BsuRI | GGCC | 1 cut(s) | 39 |
| BsuTUI | ATCGAT | 1 cut(s) | 541 |
| BtgZI | GCGATG | 1 cut(s) | 404 |
| BtsCI | GGATG | 4 cut(s) | 346, 602, 606, 805 |
| BtsIMutI | CAGTG | 1 cut(s) | 318 |
| BtuMI | TCGCGA | 1 cut(s) | 767 |
| BveI | ACCTGC | 2 cut(s) | 144, 470 |
| Cac8I | GCNNGC | 3 cut(s) | 408, 677, 681 |
| CfoI | GCGC | 1 cut(s) | 675 |
| Cfr13I | GGNCC | 2 cut(s) | 365, 449 |
| ClaI | ATCGAT | 1 cut(s) | 541 |
| CseI | GACGC | 1 cut(s) | 515 |
| CsiI | ACCWGGT | 1 cut(s) | 75 |
| CviAII | CATG | 4 cut(s) | 24, 436, 569, 670 |
| CviJI | RGCY | 6 cut(s) | 39, 125, 410, 683, 707, 762 |
| CviKI_1 | RGCY | 6 cut(s) | 39, 125, 410, 683, 707, 762 |
| DdeI | CTNAG | 1 cut(s) | 708 |
| DpnI | GATC | 2 cut(s) | 469, 776 |
| DpnII | GATC | 2 cut(s) | 467, 774 |
| EciI | GGCGGA | 1 cut(s) | 353 |
| Eco31I | GGTCTC | 1 cut(s) | 666 |
| Eco47I | GGWCC | 2 cut(s) | 365, 449 |
| EcoO109I | RGGNCCY | 1 cut(s) | 365 |
| EcoRI | GAATTC | 1 cut(s) | 752 |
| EcoRII | CCWGG | 1 cut(s) | 75 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| Esp3I | CGTCTC | 1 cut(s) | 732 |
| FaeI | CATG | 4 cut(s) | 27, 439, 572, 673 |
| FatI | CATG | 4 cut(s) | 23, 435, 568, 669 |
| FauNDI | CATATG | 1 cut(s) | 179 |
| Fnu4HI | GCNGC | 2 cut(s) | 126, 345 |
| FokI | GGATG | 4 cut(s) | 353, 609, 613, 792 |
| Fsp4HI | GCNGC | 2 cut(s) | 126, 345 |
| FspBI | CTAG | 3 cut(s) | 96, 453, 749 |
| GlaI | GCGC | 1 cut(s) | 674 |
| GluI | GCNGC | 2 cut(s) | 126, 345 |
| GsaI | CCCAGC | 1 cut(s) | 687 |
| GsuI | CTGGAG | 3 cut(s) | 161, 381, 636 |
| HaeIII | GGCC | 1 cut(s) | 39 |
| HapII | CCGG | 1 cut(s) | 403 |
| HgaI | GACGC | 1 cut(s) | 515 |
| HhaI | GCGC | 1 cut(s) | 675 |
| Hin1II | CATG | 4 cut(s) | 27, 439, 572, 673 |
| Hin6I | GCGC | 1 cut(s) | 673 |
| HinP1I | GCGC | 1 cut(s) | 673 |
| HincII | GTYRAC | 2 cut(s) | 73, 418 |
| HindII | GTYRAC | 2 cut(s) | 73, 418 |
| HinfI | GANTC | 7 cut(s) | 16, 143, 399, 456, 543, 604, 824 |
| HpaI | GTTAAC | 1 cut(s) | 73 |
| HpaII | CCGG | 1 cut(s) | 403 |
| HphI | GGTGA | 4 cut(s) | 91, 299, 451, 598 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 418 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 189, 472, 800 |
| Hpy188III | TCNNGA | 8 cut(s) | 13, 151, 360, 447, 503, 724, 749, 766 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 418 |
| HpyAV | CCTTC | 3 cut(s) | 633, 737, 763 |
| HpyCH4III | ACNGT | 2 cut(s) | 203, 814 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 260, 344, 465, 623 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 344, 620 |
| HpyF3I | CTNAG | 1 cut(s) | 708 |
| Hsp92II | CATG | 4 cut(s) | 27, 439, 572, 673 |
| HspAI | GCGC | 1 cut(s) | 673 |
| KspAI | GTTAAC | 1 cut(s) | 73 |
| Kzo9I | GATC | 2 cut(s) | 467, 774 |
| Lsp1109I | GCAGC | 1 cut(s) | 356 |
| LweI | GCATC | 5 cut(s) | 13, 52, 331, 610, 814 |
| MabI | ACCWGGT | 1 cut(s) | 75 |
| MaeI | CTAG | 3 cut(s) | 96, 453, 749 |
| MaeIII | GTNAC | 3 cut(s) | 203, 515, 558 |
| MalI | GATC | 2 cut(s) | 469, 776 |
| MboI | GATC | 2 cut(s) | 467, 774 |
| MboII | GAAGA | 1 cut(s) | 238 |
| MluCI | AATT | 8 cut(s) | 28, 159, 265, 291, 324, 535, 645, 752 |
| MlyI | GAGTC | 1 cut(s) | 152 |
| MmeI | TCCRAC | 3 cut(s) | 616, 718, 833 |
| MnlI | CCTC | 6 cut(s) | 147, 274, 356, 378, 381, 541 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 398 |
| MseI | TTAA | 4 cut(s) | 72, 498, 648, 832 |
| MspI | CCGG | 1 cut(s) | 403 |
| MspR9I | CCNGG | 1 cut(s) | 77 |
| MvaI | CCWGG | 1 cut(s) | 77 |
| MvnI | CGCG | 1 cut(s) | 767 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 344, 620 |
| NdeI | CATATG | 1 cut(s) | 179 |
| NdeII | GATC | 2 cut(s) | 467, 774 |
| NlaIII | CATG | 4 cut(s) | 27, 439, 572, 673 |
| NmuCI | GTSAC | 1 cut(s) | 203 |
| NruI | TCGCGA | 1 cut(s) | 767 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PaqCI | CACCTGC | 1 cut(s) | 470 |
| PdmI | GAANNNNTTC | 1 cut(s) | 398 |
| PfeI | GAWTC | 6 cut(s) | 16, 399, 456, 543, 604, 824 |
| PkrI | GCNGC | 2 cut(s) | 127, 346 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| PpuMI | RGGWCCY | 1 cut(s) | 365 |
| PshAI | GACNNNNGTC | 2 cut(s) | 477, 744 |
| Psp5II | RGGWCCY | 1 cut(s) | 365 |
| Psp6I | CCWGG | 1 cut(s) | 75 |
| PspFI | CCCAGC | 1 cut(s) | 683 |
| PspGI | CCWGG | 1 cut(s) | 75 |
| PspPI | GGNCC | 2 cut(s) | 365, 449 |
| PspPPI | RGGWCCY | 1 cut(s) | 365 |
| PstI | CTGCAG | 1 cut(s) | 467 |
| RruI | TCGCGA | 1 cut(s) | 767 |
| SaqAI | TTAA | 4 cut(s) | 72, 498, 648, 832 |
| SatI | GCNGC | 2 cut(s) | 126, 345 |
| Sau3AI | GATC | 2 cut(s) | 467, 774 |
| Sau96I | GGNCC | 2 cut(s) | 365, 449 |
| SchI | GAGTC | 1 cut(s) | 152 |
| ScrFI | CCNGG | 1 cut(s) | 77 |
| SetI | ASST | 9 cut(s) | 78, 138, 285, 367, 412, 454, 464, 709, 748 |
| SexAI | ACCWGGT | 1 cut(s) | 75 |
| SfaNI | GCATC | 5 cut(s) | 13, 52, 331, 610, 814 |
| SfcI | CTRYAG | 1 cut(s) | 463 |
| SinI | GGWCC | 2 cut(s) | 365, 449 |
| SmlI | CTYRAG | 1 cut(s) | 722 |
| SmoI | CTYRAG | 1 cut(s) | 722 |
| Sse9I | AATT | 8 cut(s) | 28, 159, 265, 291, 324, 535, 645, 752 |
| SsiI | CCGC | 2 cut(s) | 126, 338 |
| SspMI | CTAG | 3 cut(s) | 96, 453, 749 |
| StyD4I | CCNGG | 1 cut(s) | 75 |
| TaaI | ACNGT | 2 cut(s) | 203, 814 |
| TaqI | TCGA | 7 cut(s) | 51, 244, 521, 541, 546, 777, 822 |
| TasI | AATT | 8 cut(s) | 28, 159, 265, 291, 324, 535, 645, 752 |
| TauI | GCSGC | 1 cut(s) | 128 |
| TfiI | GAWTC | 6 cut(s) | 16, 399, 456, 543, 604, 824 |
| Tru1I | TTAA | 4 cut(s) | 72, 498, 648, 832 |
| Tru9I | TTAA | 4 cut(s) | 72, 498, 648, 832 |
| TscAI | CASTG | 1 cut(s) | 325 |
| TseFI | GTSAC | 1 cut(s) | 203 |
| TseI | GCWGC | 1 cut(s) | 344 |
| Tsp45I | GTSAC | 1 cut(s) | 203 |
| TspDTI | ATGAA | 4 cut(s) | 239, 259, 407, 784 |
| TspGWI | ACGGA | 3 cut(s) | 136, 222, 317 |
| TspRI | CASTG | 1 cut(s) | 325 |
| VpaK11BI | GGWCC | 2 cut(s) | 365, 449 |
| XapI | RAATTY | 2 cut(s) | 324, 752 |
| XbaI | TCTAGA | 1 cut(s) | 748 |
| XmnI | GAANNNNTTC | 1 cut(s) | 398 |
| XspI | CTAG | 3 cut(s) | 96, 453, 749 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |