ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 33 |
| AccB1I | GGYRCC | 1 cut(s) | 366 |
| AcsI | RAATTY | 2 cut(s) | 116, 537 |
| AcuI | CTGAAG | 2 cut(s) | 211, 603 |
| AdeI | CACNNNGTG | 1 cut(s) | 630 |
| AfaI | GTAC | 3 cut(s) | 329, 528, 674 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 302 |
| AgsI | TTSAA | 2 cut(s) | 398, 542 |
| AluBI | AGCT | 1 cut(s) | 322 |
| AluI | AGCT | 1 cut(s) | 322 |
| Alw21I | GWGCWC | 1 cut(s) | 266 |
| Alw26I | GTCTC | 2 cut(s) | 346, 431 |
| AoxI | GGCC | 4 cut(s) | 293, 493, 600, 668 |
| ApeKI | GCWGC | 1 cut(s) | 319 |
| ApoI | RAATTY | 2 cut(s) | 116, 537 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 14, 46 |
| AspS9I | GGNCC | 1 cut(s) | 493 |
| AsuHPI | GGTGA | 4 cut(s) | 196, 301, 625, 649 |
| BanI | GGYRCC | 1 cut(s) | 366 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 31, 63 |
| BbsI | GAAGAC | 2 cut(s) | 205, 539 |
| Bbv12I | GWGCWC | 1 cut(s) | 266 |
| BbvI | GCAGC | 1 cut(s) | 331 |
| BccI | CCATC | 1 cut(s) | 610 |
| BceAI | ACGGC | 1 cut(s) | 655 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BcoDI | GTCTC | 2 cut(s) | 346, 431 |
| BfaI | CTAG | 2 cut(s) | 462, 591 |
| BfmI | CTRYAG | 1 cut(s) | 297 |
| BfuAI | ACCTGC | 1 cut(s) | 33 |
| BglII | AGATCT | 1 cut(s) | 658 |
| BisI | GCNGC | 1 cut(s) | 320 |
| BlsI | GCNGC | 1 cut(s) | 321 |
| BmgT120I | GGNCC | 1 cut(s) | 493 |
| BmiI | GGNNCC | 2 cut(s) | 368, 494 |
| BmsI | GCATC | 1 cut(s) | 610 |
| BpiI | GAAGAC | 2 cut(s) | 205, 539 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 248, 280 |
| BpmI | CTGGAG | 1 cut(s) | 370 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 302 |
| BseGI | GGATG | 2 cut(s) | 273, 625 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 302 |
| BseRI | GAGGAG | 2 cut(s) | 124, 272 |
| BseXI | GCAGC | 1 cut(s) | 331 |
| BseYI | CCCAGC | 1 cut(s) | 322 |
| BshFI | GGCC | 4 cut(s) | 295, 495, 602, 670 |
| BshNI | GGYRCC | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 266 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 302 |
| BsmAI | GTCTC | 2 cut(s) | 346, 431 |
| BsnI | GGCC | 4 cut(s) | 295, 495, 602, 670 |
| Bsp1286I | GDGCHC | 1 cut(s) | 266 |
| Bsp143I | GATC | 3 cut(s) | 160, 444, 658 |
| BspANI | GGCC | 4 cut(s) | 295, 495, 602, 670 |
| BspLI | GGNNCC | 2 cut(s) | 368, 494 |
| BspMI | ACCTGC | 1 cut(s) | 33 |
| BspT107I | GGYRCC | 1 cut(s) | 366 |
| BssMI | GATC | 3 cut(s) | 160, 444, 658 |
| Bst4CI | ACNGT | 2 cut(s) | 457, 630 |
| BstC8I | GCNNGC | 1 cut(s) | 346 |
| BstDEI | CTNAG | 1 cut(s) | 69 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 300 |
| BstF5I | GGATG | 2 cut(s) | 273, 625 |
| BstKTI | GATC | 3 cut(s) | 163, 447, 661 |
| BstMAI | GTCTC | 2 cut(s) | 346, 431 |
| BstMBI | GATC | 3 cut(s) | 160, 444, 658 |
| BstSFI | CTRYAG | 1 cut(s) | 297 |
| BstV1I | GCAGC | 1 cut(s) | 331 |
| BstV2I | GAAGAC | 2 cut(s) | 205, 539 |
| BstX2I | RGATCY | 1 cut(s) | 658 |
| BstYI | RGATCY | 1 cut(s) | 658 |
| BsuRI | GGCC | 4 cut(s) | 295, 495, 602, 670 |
| BtsCI | GGATG | 2 cut(s) | 273, 625 |
| BtsIMutI | CAGTG | 3 cut(s) | 453, 531, 675 |
| BveI | ACCTGC | 1 cut(s) | 33 |
| Cac8I | GCNNGC | 1 cut(s) | 346 |
| Cfr13I | GGNCC | 1 cut(s) | 493 |
| Csp6I | GTAC | 3 cut(s) | 328, 527, 673 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 266, 301 |
| CviAII | CATG | 5 cut(s) | 25, 51, 130, 248, 649 |
| CviQI | GTAC | 3 cut(s) | 328, 527, 673 |
| DdeI | CTNAG | 1 cut(s) | 69 |
| DpnI | GATC | 3 cut(s) | 162, 446, 660 |
| DpnII | GATC | 3 cut(s) | 160, 444, 658 |
| DraI | TTTAAA | 1 cut(s) | 144 |
| DraIII | CACNNNGTG | 1 cut(s) | 630 |
| Eco147I | AGGCCT | 2 cut(s) | 295, 602 |
| Eco32I | GATATC | 1 cut(s) | 432 |
| Eco57I | CTGAAG | 2 cut(s) | 211, 603 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 300 |
| EcoO109I | RGGNCCY | 1 cut(s) | 493 |
| EcoRV | GATATC | 1 cut(s) | 432 |
| FaeI | CATG | 5 cut(s) | 28, 54, 133, 251, 652 |
| FaiI | YATR | 9 cut(s) | 20, 26, 52, 131, 244, 249, 359, 650, 665 |
| FatI | CATG | 5 cut(s) | 24, 50, 129, 247, 648 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 1 cut(s) | 320 |
| FokI | GGATG | 2 cut(s) | 260, 632 |
| Fsp4HI | GCNGC | 1 cut(s) | 320 |
| FspBI | CTAG | 2 cut(s) | 462, 591 |
| GluI | GCNGC | 1 cut(s) | 320 |
| GsaI | CCCAGC | 1 cut(s) | 326 |
| GsuI | CTGGAG | 1 cut(s) | 370 |
| HaeIII | GGCC | 4 cut(s) | 295, 495, 602, 670 |
| Hin1II | CATG | 5 cut(s) | 28, 54, 133, 251, 652 |
| HinfI | GANTC | 2 cut(s) | 155, 187 |
| HphI | GGTGA | 4 cut(s) | 196, 301, 625, 649 |
| Hpy166II | GTNNAC | 5 cut(s) | 48, 170, 194, 221, 675 |
| Hpy188I | TCNGA | 3 cut(s) | 160, 177, 436 |
| Hpy188III | TCNNGA | 2 cut(s) | 191, 448 |
| Hpy8I | GTNNAC | 5 cut(s) | 48, 170, 194, 221, 675 |
| HpyAV | CCTTC | 3 cut(s) | 465, 506, 578 |
| HpyCH4III | ACNGT | 2 cut(s) | 457, 630 |
| HpyCH4IV | ACGT | 1 cut(s) | 544 |
| HpyCH4V | TGCA | 2 cut(s) | 422, 607 |
| HpyF3I | CTNAG | 1 cut(s) | 69 |
| HpySE526I | ACGT | 1 cut(s) | 544 |
| Hsp92II | CATG | 5 cut(s) | 28, 54, 133, 251, 652 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 3 cut(s) | 160, 444, 658 |
| LmnI | GCTCC | 1 cut(s) | 269 |
| LpnPI | CCDG | 9 cut(s) | 28, 70, 214, 285, 308, 330, 334, 475, 596 |
| Lsp1109I | GCAGC | 1 cut(s) | 331 |
| LweI | GCATC | 1 cut(s) | 610 |
| MaeI | CTAG | 2 cut(s) | 462, 591 |
| MaeII | ACGT | 1 cut(s) | 544 |
| MaeIII | GTNAC | 1 cut(s) | 637 |
| MalI | GATC | 3 cut(s) | 162, 446, 660 |
| MboI | GATC | 3 cut(s) | 160, 444, 658 |
| MboII | GAAGA | 3 cut(s) | 210, 539, 668 |
| MflI | RGATCY | 1 cut(s) | 658 |
| MhlI | GDGCHC | 1 cut(s) | 266 |
| MluCI | AATT | 3 cut(s) | 116, 333, 537 |
| MlyI | GAGTC | 2 cut(s) | 164, 196 |
| MmeI | TCCRAC | 2 cut(s) | 60, 301 |
| MnlI | CCTC | 9 cut(s) | 102, 175, 250, 285, 296, 384, 396, 592, 660 |
| MseI | TTAA | 4 cut(s) | 143, 234, 336, 501 |
| MslI | CAYNNNNRTG | 2 cut(s) | 23, 103 |
| MspA1I | CMGCKG | 1 cut(s) | 322 |
| NdeII | GATC | 3 cut(s) | 160, 444, 658 |
| NlaIII | CATG | 5 cut(s) | 28, 54, 133, 251, 652 |
| NlaIV | GGNNCC | 2 cut(s) | 368, 494 |
| NmuCI | GTSAC | 1 cut(s) | 637 |
| PceI | AGGCCT | 2 cut(s) | 295, 602 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 440 |
| PkrI | GCNGC | 1 cut(s) | 321 |
| PleI | GAGTC | 2 cut(s) | 163, 195 |
| PpsI | GAGTC | 2 cut(s) | 163, 195 |
| PspFI | CCCAGC | 1 cut(s) | 322 |
| PspN4I | GGNNCC | 2 cut(s) | 368, 494 |
| PspPI | GGNCC | 1 cut(s) | 493 |
| PsuI | RGATCY | 1 cut(s) | 658 |
| PvuII | CAGCTG | 1 cut(s) | 322 |
| RsaI | GTAC | 3 cut(s) | 329, 528, 674 |
| RsaNI | GTAC | 3 cut(s) | 328, 527, 673 |
| RseI | CAYNNNNRTG | 2 cut(s) | 23, 103 |
| SaqAI | TTAA | 4 cut(s) | 143, 234, 336, 501 |
| SatI | GCNGC | 1 cut(s) | 320 |
| Sau3AI | GATC | 3 cut(s) | 160, 444, 658 |
| Sau96I | GGNCC | 1 cut(s) | 493 |
| SchI | GAGTC | 2 cut(s) | 164, 196 |
| SduI | GDGCHC | 1 cut(s) | 266 |
| SetI | ASST | 9 cut(s) | 47, 80, 186, 233, 324, 372, 547, 615, 639 |
| SfaNI | GCATC | 1 cut(s) | 610 |
| SfcI | CTRYAG | 1 cut(s) | 297 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 23, 103 |
| Sse9I | AATT | 3 cut(s) | 116, 333, 537 |
| SseBI | AGGCCT | 2 cut(s) | 295, 602 |
| SspMI | CTAG | 2 cut(s) | 462, 591 |
| StuI | AGGCCT | 2 cut(s) | 295, 602 |
| TaaI | ACNGT | 2 cut(s) | 457, 630 |
| TaiI | ACGT | 1 cut(s) | 547 |
| TasI | AATT | 3 cut(s) | 116, 333, 537 |
| Tru1I | TTAA | 4 cut(s) | 143, 234, 336, 501 |
| Tru9I | TTAA | 4 cut(s) | 143, 234, 336, 501 |
| TscAI | CASTG | 3 cut(s) | 460, 538, 682 |
| TseFI | GTSAC | 1 cut(s) | 637 |
| TseI | GCWGC | 1 cut(s) | 319 |
| Tsp45I | GTSAC | 1 cut(s) | 637 |
| TspDTI | ATGAA | 4 cut(s) | 7, 519, 665, 669 |
| TspRI | CASTG | 3 cut(s) | 460, 538, 682 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 300 |
| XapI | RAATTY | 2 cut(s) | 116, 537 |
| XspI | CTAG | 2 cut(s) | 462, 591 |