ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 748 |
| AatII | GACGTC | 1 cut(s) | 279 |
| Acc36I | ACCTGC | 1 cut(s) | 676 |
| AccI | GTMKAC | 1 cut(s) | 273 |
| AccII | CGCG | 2 cut(s) | 15, 97 |
| AccIII | TCCGGA | 1 cut(s) | 455 |
| AciI | CCGC | 5 cut(s) | 48, 95, 239, 605, 613 |
| AclI | AACGTT | 1 cut(s) | 580 |
| AclWI | GGATC | 4 cut(s) | 594, 644, 657, 672 |
| AcvI | CACGTG | 1 cut(s) | 555 |
| AcyI | GRCGYC | 1 cut(s) | 276 |
| AfaI | GTAC | 1 cut(s) | 658 |
| AfeI | AGCGCT | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 351, 405, 406 |
| AflIII | ACRYGT | 1 cut(s) | 268 |
| AgsI | TTSAA | 2 cut(s) | 143, 427 |
| AjnI | CCWGG | 1 cut(s) | 362 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 450, 482 |
| AluBI | AGCT | 3 cut(s) | 23, 491, 610 |
| AluI | AGCT | 3 cut(s) | 23, 491, 610 |
| Alw26I | GTCTC | 2 cut(s) | 283, 303 |
| AlwI | GGATC | 4 cut(s) | 594, 644, 657, 672 |
| Aor13HI | TCCGGA | 1 cut(s) | 455 |
| Aor51HI | AGCGCT | 1 cut(s) | 66 |
| ApeKI | GCWGC | 2 cut(s) | 290, 610 |
| AspLEI | GCGC | 3 cut(s) | 67, 217, 391 |
| AsuC2I | CCSGG | 1 cut(s) | 207 |
| AsuHPI | GGTGA | 2 cut(s) | 195, 431 |
| AsuII | TTCGAA | 2 cut(s) | 82, 469 |
| AsuNHI | GCTAGC | 1 cut(s) | 475 |
| BamHI | GGATCC | 1 cut(s) | 649 |
| BbrPI | CACGTG | 1 cut(s) | 555 |
| BbsI | GAAGAC | 1 cut(s) | 2 |
| BbvI | GCAGC | 2 cut(s) | 277, 597 |
| BccI | CCATC | 1 cut(s) | 502 |
| BceAI | ACGGC | 1 cut(s) | 618 |
| BciT130I | CCWGG | 1 cut(s) | 364 |
| BclI | TGATCA | 3 cut(s) | 127, 153, 562 |
| BcnI | CCSGG | 1 cut(s) | 207 |
| BcoDI | GTCTC | 2 cut(s) | 283, 303 |
| BfaI | CTAG | 2 cut(s) | 441, 476 |
| BfmI | CTRYAG | 2 cut(s) | 291, 683 |
| BfoI | RGCGCY | 2 cut(s) | 68, 218 |
| BfuAI | ACCTGC | 1 cut(s) | 676 |
| BisI | GCNGC | 2 cut(s) | 291, 611 |
| BlsI | GCNGC | 2 cut(s) | 292, 612 |
| Bme1390I | CCNGG | 2 cut(s) | 207, 364 |
| BmiI | GGNNCC | 1 cut(s) | 651 |
| BmrFI | CCNGG | 2 cut(s) | 207, 364 |
| BmsI | GCATC | 1 cut(s) | 363 |
| BmtI | GCTAGC | 1 cut(s) | 479 |
| BpiI | GAAGAC | 1 cut(s) | 2 |
| Bpu14I | TTCGAA | 2 cut(s) | 82, 469 |
| BpuMI | CCSGG | 1 cut(s) | 207 |
| BsaAI | YACGTR | 1 cut(s) | 555 |
| BsaHI | GRCGYC | 1 cut(s) | 276 |
| BsaI | GGTCTC | 1 cut(s) | 303 |
| BsaJI | CCNNGG | 3 cut(s) | 206, 363, 404 |
| BsaWI | WCCGGW | 2 cut(s) | 455, 539 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 450, 480 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 351, 405, 406 |
| Bse1I | ACTGG | 2 cut(s) | 325, 387 |
| Bse3DI | GCAATG | 1 cut(s) | 709 |
| BseAI | TCCGGA | 1 cut(s) | 455 |
| BseBI | CCWGG | 1 cut(s) | 364 |
| BseDI | CCNNGG | 3 cut(s) | 206, 363, 404 |
| BseGI | GGATG | 3 cut(s) | 231, 238, 395 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 351, 405, 406 |
| BseMI | GCAATG | 1 cut(s) | 709 |
| BseNI | ACTGG | 2 cut(s) | 325, 387 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BseXI | GCAGC | 2 cut(s) | 277, 597 |
| Bsh1236I | CGCG | 2 cut(s) | 15, 97 |
| Bsh1285I | CGRYCG | 1 cut(s) | 352 |
| BsiEI | CGRYCG | 1 cut(s) | 352 |
| BsiSI | CCGG | 3 cut(s) | 206, 456, 540 |
| BslFI | GGGAC | 2 cut(s) | 629, 657 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 351, 405, 406 |
| BsmAI | GTCTC | 2 cut(s) | 283, 303 |
| BsmBI | CGTCTC | 1 cut(s) | 283 |
| BsmFI | GGGAC | 2 cut(s) | 629, 657 |
| Bso31I | GGTCTC | 1 cut(s) | 303 |
| Bsp119I | TTCGAA | 2 cut(s) | 82, 469 |
| Bsp13I | TCCGGA | 1 cut(s) | 455 |
| Bsp143I | GATC | 8 cut(s) | 73, 127, 153, 349, 562, 586, 649, 664 |
| Bsp19I | CCATGG | 1 cut(s) | 404 |
| BspACI | CCGC | 5 cut(s) | 48, 95, 239, 605, 613 |
| BspEI | TCCGGA | 1 cut(s) | 455 |
| BspFNI | CGCG | 2 cut(s) | 15, 97 |
| BspLI | GGNNCC | 1 cut(s) | 651 |
| BspMAI | CTGCAG | 2 cut(s) | 295, 687 |
| BspMI | ACCTGC | 1 cut(s) | 676 |
| BspOI | GCTAGC | 1 cut(s) | 479 |
| BspPI | GGATC | 4 cut(s) | 594, 644, 657, 672 |
| BspT104I | TTCGAA | 2 cut(s) | 82, 469 |
| BspTNI | GGTCTC | 1 cut(s) | 303 |
| BsrDI | GCAATG | 1 cut(s) | 709 |
| BsrI | ACTGG | 2 cut(s) | 325, 387 |
| BssECI | CCNNGG | 3 cut(s) | 206, 363, 404 |
| BssMI | GATC | 8 cut(s) | 73, 127, 153, 349, 562, 586, 649, 664 |
| BssNI | GRCGYC | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst2UI | CCWGG | 1 cut(s) | 364 |
| BstACI | GRCGYC | 1 cut(s) | 276 |
| BstBAI | YACGTR | 1 cut(s) | 555 |
| BstBI | TTCGAA | 2 cut(s) | 82, 469 |
| BstC8I | GCNNGC | 2 cut(s) | 477, 489 |
| BstDEI | CTNAG | 4 cut(s) | 19, 573, 627, 727 |
| BstDSI | CCRYGG | 1 cut(s) | 404 |
| BstF5I | GGATG | 3 cut(s) | 231, 238, 395 |
| BstFNI | CGCG | 2 cut(s) | 15, 97 |
| BstH2I | RGCGCY | 2 cut(s) | 68, 218 |
| BstHHI | GCGC | 3 cut(s) | 67, 217, 391 |
| BstKTI | GATC | 8 cut(s) | 76, 130, 156, 352, 565, 589, 652, 667 |
| BstMAI | GTCTC | 2 cut(s) | 283, 303 |
| BstMBI | GATC | 8 cut(s) | 73, 127, 153, 349, 562, 586, 649, 664 |
| BstMCI | CGRYCG | 1 cut(s) | 352 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 54 |
| BstNI | CCWGG | 1 cut(s) | 364 |
| BstNSI | RCATGY | 1 cut(s) | 272 |
| BstSCI | CCNGG | 2 cut(s) | 205, 362 |
| BstSFI | CTRYAG | 2 cut(s) | 291, 683 |
| BstUI | CGCG | 2 cut(s) | 15, 97 |
| BstV1I | GCAGC | 2 cut(s) | 277, 597 |
| BstV2I | GAAGAC | 1 cut(s) | 2 |
| BstX2I | RGATCY | 1 cut(s) | 649 |
| BstYI | RGATCY | 1 cut(s) | 649 |
| BtgI | CCRYGG | 1 cut(s) | 404 |
| BtsCI | GGATG | 3 cut(s) | 231, 238, 395 |
| BveI | ACCTGC | 1 cut(s) | 676 |
| Cac8I | GCNNGC | 2 cut(s) | 477, 489 |
| CfoI | GCGC | 3 cut(s) | 67, 217, 391 |
| CseI | GACGC | 1 cut(s) | 4 |
| Csp6I | GTAC | 1 cut(s) | 657 |
| CviAII | CATG | 2 cut(s) | 269, 405 |
| CviJI | RGCY | 7 cut(s) | 23, 290, 475, 491, 503, 546, 610 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 290, 475, 491, 503, 546, 610 |
| CviQI | GTAC | 1 cut(s) | 657 |
| DdeI | CTNAG | 4 cut(s) | 19, 573, 627, 727 |
| DpnI | GATC | 8 cut(s) | 75, 129, 155, 351, 564, 588, 651, 666 |
| DpnII | GATC | 8 cut(s) | 73, 127, 153, 349, 562, 586, 649, 664 |
| EciI | GGCGGA | 1 cut(s) | 620 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco31I | GGTCTC | 1 cut(s) | 303 |
| Eco47III | AGCGCT | 1 cut(s) | 66 |
| Eco72I | CACGTG | 1 cut(s) | 555 |
| EcoRII | CCWGG | 1 cut(s) | 362 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| Esp3I | CGTCTC | 1 cut(s) | 283 |
| FaeI | CATG | 2 cut(s) | 272, 408 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 123, 155 |
| FaqI | GGGAC | 2 cut(s) | 629, 657 |
| FatI | CATG | 2 cut(s) | 268, 404 |
| FauI | CCCGC | 1 cut(s) | 606 |
| FbaI | TGATCA | 3 cut(s) | 127, 153, 562 |
| FblI | GTMKAC | 1 cut(s) | 273 |
| Fnu4HI | GCNGC | 2 cut(s) | 291, 611 |
| FokI | GGATG | 3 cut(s) | 238, 245, 382 |
| Fsp4HI | GCNGC | 2 cut(s) | 291, 611 |
| FspBI | CTAG | 2 cut(s) | 441, 476 |
| GlaI | GCGC | 3 cut(s) | 66, 216, 390 |
| GluI | GCNGC | 2 cut(s) | 291, 611 |
| HaeII | RGCGCY | 2 cut(s) | 68, 218 |
| HapII | CCGG | 3 cut(s) | 206, 456, 540 |
| HgaI | GACGC | 1 cut(s) | 4 |
| HhaI | GCGC | 3 cut(s) | 67, 217, 391 |
| Hin1I | GRCGYC | 1 cut(s) | 276 |
| Hin1II | CATG | 2 cut(s) | 272, 408 |
| Hin6I | GCGC | 3 cut(s) | 65, 215, 389 |
| HinP1I | GCGC | 3 cut(s) | 65, 215, 389 |
| HincII | GTYRAC | 2 cut(s) | 274, 318 |
| HindII | GTYRAC | 2 cut(s) | 274, 318 |
| HindIII | AAGCTT | 1 cut(s) | 489 |
| HinfI | GANTC | 8 cut(s) | 7, 79, 143, 200, 355, 433, 640, 695 |
| HpaI | GTTAAC | 1 cut(s) | 318 |
| HpaII | CCGG | 3 cut(s) | 206, 456, 540 |
| HphI | GGTGA | 2 cut(s) | 195, 431 |
| Hpy166II | GTNNAC | 2 cut(s) | 274, 318 |
| Hpy188I | TCNGA | 7 cut(s) | 78, 115, 303, 354, 562, 570, 664 |
| Hpy188III | TCNNGA | 3 cut(s) | 157, 223, 456 |
| Hpy8I | GTNNAC | 2 cut(s) | 274, 318 |
| Hpy99I | CGWCG | 3 cut(s) | 63, 278, 664 |
| HpyAV | CCTTC | 2 cut(s) | 223, 465 |
| HpyCH4IV | ACGT | 4 cut(s) | 276, 554, 580, 659 |
| HpyCH4V | TGCA | 5 cut(s) | 293, 338, 487, 685, 707 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 54 |
| HpyF3I | CTNAG | 4 cut(s) | 19, 573, 627, 727 |
| HpySE526I | ACGT | 4 cut(s) | 276, 554, 580, 659 |
| Hsp92I | GRCGYC | 1 cut(s) | 276 |
| Hsp92II | CATG | 2 cut(s) | 272, 408 |
| HspAI | GCGC | 3 cut(s) | 65, 215, 389 |
| Kpn2I | TCCGGA | 1 cut(s) | 455 |
| Ksp22I | TGATCA | 3 cut(s) | 127, 153, 562 |
| KspAI | GTTAAC | 1 cut(s) | 318 |
| Kzo9I | GATC | 8 cut(s) | 73, 127, 153, 349, 562, 586, 649, 664 |
| LmnI | GCTCC | 1 cut(s) | 607 |
| Lsp1109I | GCAGC | 2 cut(s) | 277, 597 |
| LweI | GCATC | 1 cut(s) | 363 |
| MaeI | CTAG | 2 cut(s) | 441, 476 |
| MaeII | ACGT | 4 cut(s) | 276, 554, 580, 659 |
| MaeIII | GTNAC | 1 cut(s) | 736 |
| MalI | GATC | 8 cut(s) | 75, 129, 155, 351, 564, 588, 651, 666 |
| MboI | GATC | 8 cut(s) | 73, 127, 153, 349, 562, 586, 649, 664 |
| MflI | RGATCY | 1 cut(s) | 649 |
| MluCI | AATT | 3 cut(s) | 28, 172, 720 |
| MlyI | GAGTC | 4 cut(s) | 16, 364, 634, 704 |
| MmeI | TCCRAC | 1 cut(s) | 642 |
| MnlI | CCTC | 6 cut(s) | 181, 190, 306, 452, 493, 643 |
| MroI | TCCGGA | 1 cut(s) | 455 |
| MseI | TTAA | 1 cut(s) | 317 |
| MspI | CCGG | 3 cut(s) | 206, 456, 540 |
| MspR9I | CCNGG | 2 cut(s) | 207, 364 |
| MvaI | CCWGG | 1 cut(s) | 364 |
| MvnI | CGCG | 2 cut(s) | 15, 97 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 54 |
| NciI | CCSGG | 1 cut(s) | 207 |
| NcoI | CCATGG | 1 cut(s) | 404 |
| NdeII | GATC | 8 cut(s) | 73, 127, 153, 349, 562, 586, 649, 664 |
| NheI | GCTAGC | 1 cut(s) | 475 |
| NlaIII | CATG | 2 cut(s) | 272, 408 |
| NlaIV | GGNNCC | 1 cut(s) | 651 |
| NspI | RCATGY | 1 cut(s) | 272 |
| NspV | TTCGAA | 2 cut(s) | 82, 469 |
| PciI | ACATGT | 1 cut(s) | 268 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 586 |
| PfeI | GAWTC | 4 cut(s) | 79, 143, 200, 433 |
| PkrI | GCNGC | 2 cut(s) | 292, 612 |
| Ple19I | CGATCG | 1 cut(s) | 352 |
| PleI | GAGTC | 4 cut(s) | 15, 363, 634, 703 |
| PmaCI | CACGTG | 1 cut(s) | 555 |
| PmlI | CACGTG | 1 cut(s) | 555 |
| PpsI | GAGTC | 4 cut(s) | 15, 363, 634, 703 |
| Ppu21I | YACGTR | 1 cut(s) | 555 |
| PscI | ACATGT | 1 cut(s) | 268 |
| PsiI | TTATAA | 1 cut(s) | 748 |
| Psp1406I | AACGTT | 1 cut(s) | 580 |
| Psp6I | CCWGG | 1 cut(s) | 362 |
| PspCI | CACGTG | 1 cut(s) | 555 |
| PspGI | CCWGG | 1 cut(s) | 362 |
| PspN4I | GGNNCC | 1 cut(s) | 651 |
| PstI | CTGCAG | 2 cut(s) | 295, 687 |
| PsuI | RGATCY | 1 cut(s) | 649 |
| PvuI | CGATCG | 1 cut(s) | 352 |
| RsaI | GTAC | 1 cut(s) | 658 |
| RsaNI | GTAC | 1 cut(s) | 657 |
| SalI | GTCGAC | 1 cut(s) | 272 |
| SaqAI | TTAA | 1 cut(s) | 317 |
| SatI | GCNGC | 2 cut(s) | 291, 611 |
| Sau3AI | GATC | 8 cut(s) | 73, 127, 153, 349, 562, 586, 649, 664 |
| SchI | GAGTC | 4 cut(s) | 16, 364, 634, 704 |
| ScrFI | CCNGG | 2 cut(s) | 207, 364 |
| SfaNI | GCATC | 1 cut(s) | 363 |
| SfcI | CTRYAG | 2 cut(s) | 291, 683 |
| SfuI | TTCGAA | 2 cut(s) | 82, 469 |
| Sse9I | AATT | 3 cut(s) | 28, 172, 720 |
| SsiI | CCGC | 5 cut(s) | 48, 95, 239, 605, 613 |
| SspMI | CTAG | 2 cut(s) | 441, 476 |
| StyD4I | CCNGG | 2 cut(s) | 205, 362 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaiI | ACGT | 4 cut(s) | 279, 557, 583, 662 |
| TaqI | TCGA | 4 cut(s) | 82, 273, 469, 589 |
| TasI | AATT | 3 cut(s) | 28, 172, 720 |
| TfiI | GAWTC | 4 cut(s) | 79, 143, 200, 433 |
| Tru1I | TTAA | 1 cut(s) | 317 |
| Tru9I | TTAA | 1 cut(s) | 317 |
| TseI | GCWGC | 2 cut(s) | 290, 610 |
| TspDTI | ATGAA | 3 cut(s) | 233, 242, 732 |
| XceI | RCATGY | 1 cut(s) | 272 |
| XmiI | GTMKAC | 1 cut(s) | 273 |
| XspI | CTAG | 2 cut(s) | 441, 476 |
| ZraI | GACGTC | 1 cut(s) | 277 |