ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 418 - 471 | 3.5e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1104 |
| AccI | GTMKAC | 1 cut(s) | 393 |
| AclWI | GGATC | 1 cut(s) | 212 |
| AcsI | RAATTY | 2 cut(s) | 273, 449 |
| AcuI | CTGAAG | 1 cut(s) | 1350 |
| AdeI | CACNNNGTG | 1 cut(s) | 877 |
| AfaI | GTAC | 2 cut(s) | 785, 814 |
| AfeI | AGCGCT | 1 cut(s) | 96 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 492, 682, 1104 |
| AflIII | ACRYGT | 1 cut(s) | 1375 |
| AgeI | ACCGGT | 1 cut(s) | 1348 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1079, 1111 |
| Alw21I | GWGCWC | 3 cut(s) | 349, 954, 1148 |
| Alw26I | GTCTC | 3 cut(s) | 527, 1114, 1305 |
| AlwI | GGATC | 1 cut(s) | 212 |
| Ama87I | CYCGRG | 1 cut(s) | 924 |
| Aor51HI | AGCGCT | 1 cut(s) | 96 |
| AoxI | GGCC | 2 cut(s) | 175, 684 |
| ApeKI | GCWGC | 4 cut(s) | 218, 824, 1334, 1400 |
| ApoI | RAATTY | 2 cut(s) | 273, 449 |
| AsiGI | ACCGGT | 1 cut(s) | 1348 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 136, 1302 |
| AspLEI | GCGC | 2 cut(s) | 7, 97 |
| AspS9I | GGNCC | 1 cut(s) | 921 |
| AsuC2I | CCSGG | 3 cut(s) | 833, 925, 926 |
| AsuHPI | GGTGA | 5 cut(s) | 314, 445, 818, 889, 1226 |
| AsuII | TTCGAA | 2 cut(s) | 130, 256 |
| AsuNHI | GCTAGC | 1 cut(s) | 1229 |
| AvaI | CYCGRG | 1 cut(s) | 924 |
| AvaII | GGWCC | 1 cut(s) | 921 |
| BaeGI | GKGCMC | 1 cut(s) | 935 |
| BanII | GRGCYC | 1 cut(s) | 349 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 488, 520 |
| Bbv12I | GWGCWC | 3 cut(s) | 349, 954, 1148 |
| BbvI | GCAGC | 4 cut(s) | 205, 836, 1346, 1412 |
| BceAI | ACGGC | 1 cut(s) | 378 |
| BciVI | GTATCC | 1 cut(s) | 877 |
| BcnI | CCSGG | 3 cut(s) | 833, 925, 926 |
| BcoDI | GTCTC | 3 cut(s) | 527, 1114, 1305 |
| BfaI | CTAG | 4 cut(s) | 29, 41, 1197, 1230 |
| BfmI | CTRYAG | 1 cut(s) | 1339 |
| BfoI | RGCGCY | 1 cut(s) | 98 |
| BfuI | GTATCC | 1 cut(s) | 877 |
| BisI | GCNGC | 4 cut(s) | 219, 825, 1335, 1401 |
| BlsI | GCNGC | 4 cut(s) | 220, 826, 1336, 1402 |
| BmcAI | AGTACT | 1 cut(s) | 785 |
| Bme1390I | CCNGG | 3 cut(s) | 833, 925, 926 |
| Bme18I | GGWCC | 1 cut(s) | 921 |
| BmeT110I | CYCGRG | 1 cut(s) | 924 |
| BmgT120I | GGNCC | 1 cut(s) | 921 |
| BmiI | GGNNCC | 1 cut(s) | 923 |
| BmrFI | CCNGG | 3 cut(s) | 833, 925, 926 |
| BmsI | GCATC | 1 cut(s) | 1005 |
| BmtI | GCTAGC | 1 cut(s) | 1233 |
| Bpu10I | CCTNAGC | 2 cut(s) | 917, 942 |
| Bpu14I | TTCGAA | 2 cut(s) | 130, 256 |
| BpuEI | CTTGAG | 1 cut(s) | 207 |
| BpuMI | CCSGG | 3 cut(s) | 833, 925, 926 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1067 |
| BsaI | GGTCTC | 1 cut(s) | 1114 |
| BsaJI | CCNNGG | 5 cut(s) | 287, 350, 491, 924, 1404 |
| BsaWI | WCCGGW | 1 cut(s) | 1348 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 46, 76, 1079, 1109 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 492, 682, 1104 |
| Bse118I | RCCGGY | 1 cut(s) | 1348 |
| Bse1I | ACTGG | 2 cut(s) | 998, 1029 |
| Bse3DI | GCAATG | 2 cut(s) | 393, 1329 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1067 |
| BseDI | CCNNGG | 5 cut(s) | 287, 350, 491, 924, 1404 |
| BseGI | GGATG | 8 cut(s) | 79, 86, 218, 274, 618, 655, 828, 1020 |
| BseJI | GATNNNNATC | 1 cut(s) | 1067 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 492, 682, 1104 |
| BseMI | GCAATG | 2 cut(s) | 393, 1329 |
| BseMII | CTCAG | 1 cut(s) | 558 |
| BseNI | ACTGG | 2 cut(s) | 998, 1029 |
| BseRI | GAGGAG | 1 cut(s) | 1305 |
| BseSI | GKGCMC | 1 cut(s) | 935 |
| BseXI | GCAGC | 4 cut(s) | 205, 836, 1346, 1412 |
| BshFI | GGCC | 2 cut(s) | 177, 686 |
| BshTI | ACCGGT | 1 cut(s) | 1348 |
| BsiHKAI | GWGCWC | 3 cut(s) | 349, 954, 1148 |
| BsiHKCI | CYCGRG | 1 cut(s) | 924 |
| BsiSI | CCGG | 3 cut(s) | 833, 925, 1349 |
| BslFI | GGGAC | 2 cut(s) | 668, 907 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 492, 682, 1104 |
| BsmAI | GTCTC | 3 cut(s) | 527, 1114, 1305 |
| BsmFI | GGGAC | 2 cut(s) | 668, 907 |
| BsnI | GGCC | 2 cut(s) | 177, 686 |
| Bso31I | GGTCTC | 1 cut(s) | 1114 |
| BsoBI | CYCGRG | 1 cut(s) | 924 |
| Bsp119I | TTCGAA | 2 cut(s) | 130, 256 |
| Bsp1286I | GDGCHC | 4 cut(s) | 349, 935, 954, 1148 |
| Bsp143I | GATC | 2 cut(s) | 204, 547 |
| Bsp19I | CCATGG | 2 cut(s) | 287, 491 |
| BspANI | GGCC | 2 cut(s) | 177, 686 |
| BspCNI | CTCAG | 1 cut(s) | 557 |
| BspLI | GGNNCC | 1 cut(s) | 923 |
| BspOI | GCTAGC | 1 cut(s) | 1233 |
| BspPI | GGATC | 1 cut(s) | 212 |
| BspT104I | TTCGAA | 2 cut(s) | 130, 256 |
| BspTNI | GGTCTC | 1 cut(s) | 1114 |
| BsrDI | GCAATG | 2 cut(s) | 393, 1329 |
| BsrFI | RCCGGY | 1 cut(s) | 1348 |
| BsrI | ACTGG | 2 cut(s) | 998, 1029 |
| BssAI | RCCGGY | 1 cut(s) | 1348 |
| BssECI | CCNNGG | 5 cut(s) | 287, 350, 491, 924, 1404 |
| BssMI | GATC | 2 cut(s) | 204, 547 |
| BssT1I | CCWWGG | 4 cut(s) | 287, 350, 491, 1404 |
| Bst4CI | ACNGT | 3 cut(s) | 398, 554, 1343 |
| Bst6I | CTCTTC | 3 cut(s) | 534, 870, 1158 |
| BstBI | TTCGAA | 2 cut(s) | 130, 256 |
| BstC8I | GCNNGC | 1 cut(s) | 1231 |
| BstDEI | CTNAG | 4 cut(s) | 544, 917, 942, 1307 |
| BstDSI | CCRYGG | 2 cut(s) | 287, 491 |
| BstF5I | GGATG | 8 cut(s) | 79, 86, 218, 274, 618, 655, 828, 1020 |
| BstH2I | RGCGCY | 1 cut(s) | 98 |
| BstHHI | GCGC | 2 cut(s) | 7, 97 |
| BstKTI | GATC | 2 cut(s) | 207, 550 |
| BstMAI | GTCTC | 3 cut(s) | 527, 1114, 1305 |
| BstMBI | GATC | 2 cut(s) | 204, 547 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 224, 353, 362, 958, 1397 |
| BstNSI | RCATGY | 1 cut(s) | 1379 |
| BstSCI | CCNGG | 3 cut(s) | 831, 923, 924 |
| BstSFI | CTRYAG | 1 cut(s) | 1339 |
| BstSLI | GKGCMC | 1 cut(s) | 935 |
| BstV1I | GCAGC | 4 cut(s) | 205, 836, 1346, 1412 |
| BstX2I | RGATCY | 1 cut(s) | 204 |
| BstYI | RGATCY | 1 cut(s) | 204 |
| BsuI | GTATCC | 1 cut(s) | 877 |
| BsuRI | GGCC | 2 cut(s) | 177, 686 |
| BtgI | CCRYGG | 2 cut(s) | 287, 491 |
| BtsCI | GGATG | 8 cut(s) | 79, 86, 218, 274, 618, 655, 828, 1020 |
| BtsIMutI | CAGTG | 1 cut(s) | 550 |
| Cac8I | GCNNGC | 1 cut(s) | 1231 |
| CfoI | GCGC | 2 cut(s) | 7, 97 |
| Cfr10I | RCCGGY | 1 cut(s) | 1348 |
| Cfr13I | GGNCC | 1 cut(s) | 921 |
| Cfr9I | CCCGGG | 1 cut(s) | 924 |
| CseI | GACGC | 1 cut(s) | 483 |
| Csp6I | GTAC | 2 cut(s) | 784, 813 |
| CspAI | ACCGGT | 1 cut(s) | 1348 |
| CviAII | CATG | 5 cut(s) | 288, 492, 760, 1099, 1376 |
| CviQI | GTAC | 2 cut(s) | 784, 813 |
| DdeI | CTNAG | 4 cut(s) | 544, 917, 942, 1307 |
| DpnI | GATC | 2 cut(s) | 206, 549 |
| DpnII | GATC | 2 cut(s) | 204, 547 |
| DraI | TTTAAA | 1 cut(s) | 1006 |
| DraIII | CACNNNGTG | 1 cut(s) | 877 |
| Eam1104I | CTCTTC | 3 cut(s) | 534, 870, 1158 |
| EarI | CTCTTC | 3 cut(s) | 534, 870, 1158 |
| Ecl136II | GAGCTC | 1 cut(s) | 347 |
| Eco130I | CCWWGG | 4 cut(s) | 287, 350, 491, 1404 |
| Eco147I | AGGCCT | 1 cut(s) | 686 |
| Eco24I | GRGCYC | 1 cut(s) | 349 |
| Eco31I | GGTCTC | 1 cut(s) | 1114 |
| Eco47I | GGWCC | 1 cut(s) | 921 |
| Eco47III | AGCGCT | 1 cut(s) | 96 |
| Eco53kI | GAGCTC | 1 cut(s) | 347 |
| Eco57I | CTGAAG | 1 cut(s) | 1350 |
| Eco88I | CYCGRG | 1 cut(s) | 924 |
| EcoICRI | GAGCTC | 1 cut(s) | 347 |
| EcoO109I | RGGNCCY | 1 cut(s) | 921 |
| EcoT14I | CCWWGG | 4 cut(s) | 287, 350, 491, 1404 |
| EcoT38I | GRGCYC | 1 cut(s) | 349 |
| ErhI | CCWWGG | 4 cut(s) | 287, 350, 491, 1404 |
| FaeI | CATG | 5 cut(s) | 291, 495, 763, 1102, 1379 |
| FaqI | GGGAC | 2 cut(s) | 668, 907 |
| FatI | CATG | 5 cut(s) | 287, 491, 759, 1098, 1375 |
| FauNDI | CATATG | 1 cut(s) | 18 |
| FblI | GTMKAC | 1 cut(s) | 393 |
| Fnu4HI | GCNGC | 4 cut(s) | 219, 825, 1335, 1401 |
| FokI | GGATG | 8 cut(s) | 86, 93, 225, 281, 625, 662, 815, 1027 |
| FriOI | GRGCYC | 1 cut(s) | 349 |
| Fsp4HI | GCNGC | 4 cut(s) | 219, 825, 1335, 1401 |
| FspBI | CTAG | 4 cut(s) | 29, 41, 1197, 1230 |
| GlaI | GCGC | 2 cut(s) | 6, 96 |
| GluI | GCNGC | 4 cut(s) | 219, 825, 1335, 1401 |
| HaeII | RGCGCY | 1 cut(s) | 98 |
| HaeIII | GGCC | 2 cut(s) | 177, 686 |
| HapII | CCGG | 3 cut(s) | 833, 925, 1349 |
| HgaI | GACGC | 1 cut(s) | 483 |
| HhaI | GCGC | 2 cut(s) | 7, 97 |
| Hin1II | CATG | 5 cut(s) | 291, 495, 763, 1102, 1379 |
| Hin6I | GCGC | 2 cut(s) | 5, 95 |
| HinP1I | GCGC | 2 cut(s) | 5, 95 |
| HindIII | AAGCTT | 1 cut(s) | 1247 |
| HinfI | GANTC | 8 cut(s) | 170, 253, 417, 542, 586, 738, 763, 1414 |
| HpaII | CCGG | 3 cut(s) | 833, 925, 1349 |
| HphI | GGTGA | 5 cut(s) | 314, 445, 818, 889, 1226 |
| Hpy166II | GTNNAC | 4 cut(s) | 48, 394, 1224, 1346 |
| Hpy188I | TCNGA | 5 cut(s) | 73, 194, 547, 600, 1419 |
| Hpy188III | TCNNGA | 1 cut(s) | 1119 |
| Hpy8I | GTNNAC | 4 cut(s) | 48, 394, 1224, 1346 |
| Hpy99I | CGWCG | 1 cut(s) | 477 |
| HpyAV | CCTTC | 5 cut(s) | 71, 151, 803, 1284, 1292 |
| HpyCH4III | ACNGT | 3 cut(s) | 398, 554, 1343 |
| HpyCH4V | TGCA | 2 cut(s) | 745, 1334 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 224, 353, 362, 958, 1397 |
| HpyF3I | CTNAG | 4 cut(s) | 544, 917, 942, 1307 |
| Hsp92II | CATG | 5 cut(s) | 291, 495, 763, 1102, 1379 |
| HspAI | GCGC | 2 cut(s) | 5, 95 |
| Kzo9I | GATC | 2 cut(s) | 204, 547 |
| LmnI | GCTCC | 5 cut(s) | 54, 344, 352, 966, 1262 |
| Lsp1109I | GCAGC | 4 cut(s) | 205, 836, 1346, 1412 |
| LweI | GCATC | 1 cut(s) | 1005 |
| MaeI | CTAG | 4 cut(s) | 29, 41, 1197, 1230 |
| MalI | GATC | 2 cut(s) | 206, 549 |
| MboI | GATC | 2 cut(s) | 204, 547 |
| MboII | GAAGA | 5 cut(s) | 508, 521, 857, 1096, 1175 |
| MflI | RGATCY | 1 cut(s) | 204 |
| MhlI | GDGCHC | 4 cut(s) | 349, 935, 954, 1148 |
| MluCI | AATT | 7 cut(s) | 188, 260, 273, 449, 643, 1392, 1409 |
| MlyI | GAGTC | 1 cut(s) | 536 |
| MmeI | TCCRAC | 1 cut(s) | 351 |
| MnlI | CCTC | 6 cut(s) | 307, 765, 814, 873, 879, 1283 |
| MroXI | GAANNNNTTC | 2 cut(s) | 136, 1302 |
| MseI | TTAA | 2 cut(s) | 1005, 1251 |
| MslI | CAYNNNNRTG | 1 cut(s) | 153 |
| MspI | CCGG | 3 cut(s) | 833, 925, 1349 |
| MspR9I | CCNGG | 3 cut(s) | 833, 925, 926 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 224, 353, 362, 958, 1397 |
| NciI | CCSGG | 3 cut(s) | 833, 925, 926 |
| NcoI | CCATGG | 2 cut(s) | 287, 491 |
| NdeI | CATATG | 1 cut(s) | 18 |
| NdeII | GATC | 2 cut(s) | 204, 547 |
| NheI | GCTAGC | 1 cut(s) | 1229 |
| NlaIII | CATG | 5 cut(s) | 291, 495, 763, 1102, 1379 |
| NlaIV | GGNNCC | 1 cut(s) | 923 |
| NmeAIII | GCCGAG | 1 cut(s) | 1159 |
| NspI | RCATGY | 1 cut(s) | 1379 |
| NspV | TTCGAA | 2 cut(s) | 130, 256 |
| PceI | AGGCCT | 1 cut(s) | 686 |
| PciI | ACATGT | 1 cut(s) | 1375 |
| PdmI | GAANNNNTTC | 2 cut(s) | 136, 1302 |
| PfeI | GAWTC | 7 cut(s) | 170, 253, 417, 586, 738, 763, 1414 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1104 |
| PfoI | TCCNGGA | 1 cut(s) | 831 |
| PinAI | ACCGGT | 1 cut(s) | 1348 |
| PkrI | GCNGC | 4 cut(s) | 220, 826, 1336, 1402 |
| PleI | GAGTC | 1 cut(s) | 536 |
| PpsI | GAGTC | 1 cut(s) | 536 |
| PpuMI | RGGWCCY | 1 cut(s) | 921 |
| PscI | ACATGT | 1 cut(s) | 1375 |
| Psp124BI | GAGCTC | 1 cut(s) | 349 |
| Psp5II | RGGWCCY | 1 cut(s) | 921 |
| PspN4I | GGNNCC | 1 cut(s) | 923 |
| PspPI | GGNCC | 1 cut(s) | 921 |
| PspPPI | RGGWCCY | 1 cut(s) | 921 |
| PsuI | RGATCY | 1 cut(s) | 204 |
| RsaI | GTAC | 2 cut(s) | 785, 814 |
| RsaNI | GTAC | 2 cut(s) | 784, 813 |
| RseI | CAYNNNNRTG | 1 cut(s) | 153 |
| SacI | GAGCTC | 1 cut(s) | 349 |
| SaqAI | TTAA | 2 cut(s) | 1005, 1251 |
| SatI | GCNGC | 4 cut(s) | 219, 825, 1335, 1401 |
| Sau3AI | GATC | 2 cut(s) | 204, 547 |
| Sau96I | GGNCC | 1 cut(s) | 921 |
| ScaI | AGTACT | 1 cut(s) | 785 |
| SchI | GAGTC | 1 cut(s) | 536 |
| ScrFI | CCNGG | 3 cut(s) | 833, 925, 926 |
| SduI | GDGCHC | 4 cut(s) | 349, 935, 954, 1148 |
| SfaNI | GCATC | 1 cut(s) | 1005 |
| SfcI | CTRYAG | 1 cut(s) | 1339 |
| SfuI | TTCGAA | 2 cut(s) | 130, 256 |
| SinI | GGWCC | 1 cut(s) | 921 |
| SmaI | CCCGGG | 1 cut(s) | 926 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 153 |
| SmlI | CTYRAG | 1 cut(s) | 222 |
| SmoI | CTYRAG | 1 cut(s) | 222 |
| Sse9I | AATT | 7 cut(s) | 188, 260, 273, 449, 643, 1392, 1409 |
| SseBI | AGGCCT | 1 cut(s) | 686 |
| SspI | AATATT | 2 cut(s) | 840, 973 |
| SspMI | CTAG | 4 cut(s) | 29, 41, 1197, 1230 |
| SstI | GAGCTC | 1 cut(s) | 349 |
| StuI | AGGCCT | 1 cut(s) | 686 |
| StyD4I | CCNGG | 3 cut(s) | 831, 923, 924 |
| StyI | CCWWGG | 4 cut(s) | 287, 350, 491, 1404 |
| TaaI | ACNGT | 3 cut(s) | 398, 554, 1343 |
| TaqI | TCGA | 6 cut(s) | 130, 256, 325, 430, 567, 1118 |
| TaqII | GACCGA | 1 cut(s) | 486 |
| TasI | AATT | 7 cut(s) | 188, 260, 273, 449, 643, 1392, 1409 |
| TatI | WGTACW | 1 cut(s) | 783 |
| TfiI | GAWTC | 7 cut(s) | 170, 253, 417, 586, 738, 763, 1414 |
| Tru1I | TTAA | 2 cut(s) | 1005, 1251 |
| Tru9I | TTAA | 2 cut(s) | 1005, 1251 |
| TscAI | CASTG | 1 cut(s) | 557 |
| TseI | GCWGC | 4 cut(s) | 218, 824, 1334, 1400 |
| TspDTI | ATGAA | 6 cut(s) | 35, 50, 90, 285, 1318, 1343 |
| TspGWI | ACGGA | 1 cut(s) | 608 |
| TspMI | CCCGGG | 1 cut(s) | 924 |
| TspRI | CASTG | 1 cut(s) | 557 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1104 |
| VpaK11BI | GGWCC | 1 cut(s) | 921 |
| XapI | RAATTY | 2 cut(s) | 273, 449 |
| XceI | RCATGY | 1 cut(s) | 1379 |
| XmaI | CCCGGG | 1 cut(s) | 924 |
| XmiI | GTMKAC | 1 cut(s) | 393 |
| XmnI | GAANNNNTTC | 2 cut(s) | 136, 1302 |
| XspI | CTAG | 4 cut(s) | 29, 41, 1197, 1230 |
| ZrmI | AGTACT | 1 cut(s) | 785 |