ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 290, 387 |
| AcoI | YGGCCR | 1 cut(s) | 299 |
| AcsI | RAATTY | 1 cut(s) | 583 |
| AcuI | CTGAAG | 1 cut(s) | 431 |
| AdeI | CACNNNGTG | 1 cut(s) | 85 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 259 |
| AflII | CTTAAG | 1 cut(s) | 563 |
| AgsI | TTSAA | 2 cut(s) | 394, 682 |
| AjnI | CCWGG | 2 cut(s) | 81, 374 |
| AluBI | AGCT | 3 cut(s) | 363, 433, 484 |
| AluI | AGCT | 3 cut(s) | 363, 433, 484 |
| Alw21I | GWGCWC | 1 cut(s) | 90 |
| Alw44I | GTGCAC | 1 cut(s) | 86 |
| AlwI | GGATC | 2 cut(s) | 290, 387 |
| AoxI | GGCC | 3 cut(s) | 299, 552, 573 |
| ApaLI | GTGCAC | 1 cut(s) | 86 |
| ApeKI | GCWGC | 1 cut(s) | 430 |
| ApoI | RAATTY | 1 cut(s) | 583 |
| AspS9I | GGNCC | 2 cut(s) | 552, 573 |
| AsuC2I | CCSGG | 1 cut(s) | 671 |
| AxyI | CCTNAGG | 1 cut(s) | 144 |
| BaeGI | GKGCMC | 1 cut(s) | 90 |
| BalI | TGGCCA | 1 cut(s) | 301 |
| Bbv12I | GWGCWC | 1 cut(s) | 90 |
| BbvI | GCAGC | 1 cut(s) | 442 |
| BciT130I | CCWGG | 2 cut(s) | 83, 376 |
| BclI | TGATCA | 1 cut(s) | 469 |
| BcnI | CCSGG | 1 cut(s) | 671 |
| BfrI | CTTAAG | 1 cut(s) | 563 |
| BglII | AGATCT | 1 cut(s) | 545 |
| BisI | GCNGC | 1 cut(s) | 431 |
| BlsI | GCNGC | 1 cut(s) | 432 |
| Bme1390I | CCNGG | 3 cut(s) | 83, 376, 671 |
| BmgT120I | GGNCC | 2 cut(s) | 552, 573 |
| BmiI | GGNNCC | 1 cut(s) | 574 |
| BmrFI | CCNGG | 3 cut(s) | 83, 376, 671 |
| BmrI | ACTGGG | 1 cut(s) | 486 |
| BmuI | ACTGGG | 1 cut(s) | 486 |
| BpuMI | CCSGG | 1 cut(s) | 671 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 375 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 259 |
| Bse1I | ACTGG | 3 cut(s) | 481, 598, 685 |
| Bse21I | CCTNAGG | 1 cut(s) | 144 |
| Bse3DI | GCAATG | 2 cut(s) | 112, 165 |
| BseBI | CCWGG | 2 cut(s) | 83, 376 |
| BseDI | CCNNGG | 2 cut(s) | 25, 375 |
| BseGI | GGATG | 6 cut(s) | 6, 69, 223, 249, 442, 529 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 259 |
| BseMI | GCAATG | 2 cut(s) | 112, 165 |
| BseNI | ACTGG | 3 cut(s) | 481, 598, 685 |
| BseSI | GKGCMC | 1 cut(s) | 90 |
| BseXI | GCAGC | 1 cut(s) | 442 |
| BshFI | GGCC | 3 cut(s) | 301, 554, 575 |
| BsiHKAI | GWGCWC | 1 cut(s) | 90 |
| BsiSI | CCGG | 1 cut(s) | 670 |
| BslFI | GGGAC | 2 cut(s) | 411, 478 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 259 |
| BsmFI | GGGAC | 2 cut(s) | 411, 478 |
| BsnI | GGCC | 3 cut(s) | 301, 554, 575 |
| Bsp1286I | GDGCHC | 1 cut(s) | 90 |
| Bsp143I | GATC | 8 cut(s) | 12, 178, 191, 282, 379, 460, 469, 545 |
| BspANI | GGCC | 3 cut(s) | 301, 554, 575 |
| BspLI | GGNNCC | 1 cut(s) | 574 |
| BspPI | GGATC | 2 cut(s) | 290, 387 |
| BspQI | GCTCTTC | 1 cut(s) | 213 |
| BspTI | CTTAAG | 1 cut(s) | 563 |
| BsrDI | GCAATG | 2 cut(s) | 112, 165 |
| BsrI | ACTGG | 3 cut(s) | 481, 598, 685 |
| BssECI | CCNNGG | 2 cut(s) | 25, 375 |
| BssMI | GATC | 8 cut(s) | 12, 178, 191, 282, 379, 460, 469, 545 |
| BssT1I | CCWWGG | 1 cut(s) | 25 |
| Bst2UI | CCWGG | 2 cut(s) | 83, 376 |
| Bst6I | CTCTTC | 2 cut(s) | 213, 402 |
| BstAFI | CTTAAG | 1 cut(s) | 563 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 85 |
| BstC8I | GCNNGC | 1 cut(s) | 599 |
| BstDEI | CTNAG | 2 cut(s) | 101, 144 |
| BstF5I | GGATG | 6 cut(s) | 6, 69, 223, 249, 442, 529 |
| BstKTI | GATC | 8 cut(s) | 15, 181, 194, 285, 382, 463, 472, 548 |
| BstMBI | GATC | 8 cut(s) | 12, 178, 191, 282, 379, 460, 469, 545 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 85, 439 |
| BstNI | CCWGG | 2 cut(s) | 83, 376 |
| BstSCI | CCNGG | 3 cut(s) | 81, 374, 669 |
| BstSLI | GKGCMC | 1 cut(s) | 90 |
| BstV1I | GCAGC | 1 cut(s) | 442 |
| BstX2I | RGATCY | 2 cut(s) | 282, 545 |
| BstYI | RGATCY | 2 cut(s) | 282, 545 |
| Bsu36I | CCTNAGG | 1 cut(s) | 144 |
| BsuRI | GGCC | 3 cut(s) | 301, 554, 575 |
| BtsCI | GGATG | 6 cut(s) | 6, 69, 223, 249, 442, 529 |
| BtsI | GCAGTG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 2 cut(s) | 271, 591 |
| Cac8I | GCNNGC | 1 cut(s) | 599 |
| Cfr13I | GGNCC | 2 cut(s) | 552, 573 |
| CseI | GACGC | 1 cut(s) | 408 |
| CsiI | ACCWGGT | 1 cut(s) | 81 |
| CviAII | CATG | 2 cut(s) | 53, 403 |
| DdeI | CTNAG | 2 cut(s) | 101, 144 |
| DpnI | GATC | 8 cut(s) | 14, 180, 193, 284, 381, 462, 471, 547 |
| DpnII | GATC | 8 cut(s) | 12, 178, 191, 282, 379, 460, 469, 545 |
| DraIII | CACNNNGTG | 1 cut(s) | 85 |
| EaeI | YGGCCR | 1 cut(s) | 299 |
| Eam1104I | CTCTTC | 2 cut(s) | 213, 402 |
| EarI | CTCTTC | 2 cut(s) | 213, 402 |
| Eco130I | CCWWGG | 1 cut(s) | 25 |
| Eco57I | CTGAAG | 1 cut(s) | 431 |
| Eco81I | CCTNAGG | 1 cut(s) | 144 |
| EcoRII | CCWGG | 2 cut(s) | 81, 374 |
| EcoT14I | CCWWGG | 1 cut(s) | 25 |
| ErhI | CCWWGG | 1 cut(s) | 25 |
| FaeI | CATG | 2 cut(s) | 56, 406 |
| FaiI | YATR | 7 cut(s) | 32, 54, 214, 337, 404, 521, 657 |
| FaqI | GGGAC | 2 cut(s) | 411, 478 |
| FatI | CATG | 2 cut(s) | 52, 402 |
| FbaI | TGATCA | 1 cut(s) | 469 |
| Fnu4HI | GCNGC | 1 cut(s) | 431 |
| FokI | GGATG | 5 cut(s) | 56, 230, 236, 449, 536 |
| Fsp4HI | GCNGC | 1 cut(s) | 431 |
| GluI | GCNGC | 1 cut(s) | 431 |
| HaeIII | GGCC | 3 cut(s) | 301, 554, 575 |
| HapII | CCGG | 1 cut(s) | 670 |
| HgaI | GACGC | 1 cut(s) | 408 |
| Hin1II | CATG | 2 cut(s) | 56, 406 |
| HindIII | AAGCTT | 1 cut(s) | 482 |
| HinfI | GANTC | 3 cut(s) | 37, 46, 221 |
| HpaII | CCGG | 1 cut(s) | 670 |
| Hpy166II | GTNNAC | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 3 cut(s) | 315, 384, 450 |
| Hpy188III | TCNNGA | 5 cut(s) | 10, 16, 73, 253, 495 |
| Hpy8I | GTNNAC | 1 cut(s) | 88 |
| HpyAV | CCTTC | 4 cut(s) | 36, 299, 492, 563 |
| HpyCH4IV | ACGT | 1 cut(s) | 90 |
| HpyCH4V | TGCA | 3 cut(s) | 88, 117, 611 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 85, 439 |
| HpyF3I | CTNAG | 2 cut(s) | 101, 144 |
| HpySE526I | ACGT | 1 cut(s) | 90 |
| Hsp92II | CATG | 2 cut(s) | 56, 406 |
| Ksp22I | TGATCA | 1 cut(s) | 469 |
| Kzo9I | GATC | 8 cut(s) | 12, 178, 191, 282, 379, 460, 469, 545 |
| LguI | GCTCTTC | 1 cut(s) | 213 |
| LmnI | GCTCC | 1 cut(s) | 360 |
| Lsp1109I | GCAGC | 1 cut(s) | 442 |
| MabI | ACCWGGT | 1 cut(s) | 81 |
| MaeII | ACGT | 1 cut(s) | 90 |
| MalI | GATC | 8 cut(s) | 14, 180, 193, 284, 381, 462, 471, 547 |
| MboI | GATC | 8 cut(s) | 12, 178, 191, 282, 379, 460, 469, 545 |
| MboII | GAAGA | 4 cut(s) | 200, 419, 437, 579 |
| MflI | RGATCY | 2 cut(s) | 282, 545 |
| MhlI | GDGCHC | 1 cut(s) | 90 |
| MlsI | TGGCCA | 1 cut(s) | 301 |
| MluCI | AATT | 4 cut(s) | 19, 583, 606, 677 |
| MluNI | TGGCCA | 1 cut(s) | 301 |
| MlyI | GAGTC | 1 cut(s) | 40 |
| MnlI | CCTC | 4 cut(s) | 409, 531, 612, 667 |
| Mox20I | TGGCCA | 1 cut(s) | 301 |
| MscI | TGGCCA | 1 cut(s) | 301 |
| MseI | TTAA | 2 cut(s) | 348, 564 |
| Msp20I | TGGCCA | 1 cut(s) | 301 |
| MspA1I | CMGCKG | 1 cut(s) | 433 |
| MspCI | CTTAAG | 1 cut(s) | 563 |
| MspI | CCGG | 1 cut(s) | 670 |
| MspR9I | CCNGG | 3 cut(s) | 83, 376, 671 |
| MvaI | CCWGG | 2 cut(s) | 83, 376 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 85, 439 |
| NciI | CCSGG | 1 cut(s) | 671 |
| NdeII | GATC | 8 cut(s) | 12, 178, 191, 282, 379, 460, 469, 545 |
| NlaIII | CATG | 2 cut(s) | 56, 406 |
| NlaIV | GGNNCC | 1 cut(s) | 574 |
| PciSI | GCTCTTC | 1 cut(s) | 213 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 187 |
| PfeI | GAWTC | 2 cut(s) | 37, 221 |
| PkrI | GCNGC | 1 cut(s) | 432 |
| PleI | GAGTC | 1 cut(s) | 40 |
| PpsI | GAGTC | 1 cut(s) | 40 |
| Psp6I | CCWGG | 2 cut(s) | 81, 374 |
| PspGI | CCWGG | 2 cut(s) | 81, 374 |
| PspN4I | GGNNCC | 1 cut(s) | 574 |
| PspPI | GGNCC | 2 cut(s) | 552, 573 |
| PsuI | RGATCY | 2 cut(s) | 282, 545 |
| PvuII | CAGCTG | 1 cut(s) | 433 |
| SapI | GCTCTTC | 1 cut(s) | 213 |
| SaqAI | TTAA | 2 cut(s) | 348, 564 |
| SatI | GCNGC | 1 cut(s) | 431 |
| Sau3AI | GATC | 8 cut(s) | 12, 178, 191, 282, 379, 460, 469, 545 |
| Sau96I | GGNCC | 2 cut(s) | 552, 573 |
| SchI | GAGTC | 1 cut(s) | 40 |
| ScrFI | CCNGG | 3 cut(s) | 83, 376, 671 |
| SduI | GDGCHC | 1 cut(s) | 90 |
| SetI | ASST | 8 cut(s) | 31, 87, 93, 310, 365, 435, 486, 636 |
| SexAI | ACCWGGT | 1 cut(s) | 81 |
| SmlI | CTYRAG | 1 cut(s) | 563 |
| SmoI | CTYRAG | 1 cut(s) | 563 |
| Sse9I | AATT | 4 cut(s) | 19, 583, 606, 677 |
| StyD4I | CCNGG | 3 cut(s) | 81, 374, 669 |
| StyI | CCWWGG | 1 cut(s) | 25 |
| TaiI | ACGT | 1 cut(s) | 93 |
| TaqI | TCGA | 3 cut(s) | 40, 604, 641 |
| TasI | AATT | 4 cut(s) | 19, 583, 606, 677 |
| TfiI | GAWTC | 2 cut(s) | 37, 221 |
| Tru1I | TTAA | 2 cut(s) | 348, 564 |
| Tru9I | TTAA | 2 cut(s) | 348, 564 |
| TscAI | CASTG | 2 cut(s) | 271, 598 |
| TseI | GCWGC | 1 cut(s) | 430 |
| TspDTI | ATGAA | 3 cut(s) | 17, 522, 540 |
| TspGWI | ACGGA | 1 cut(s) | 260 |
| TspRI | CASTG | 2 cut(s) | 271, 598 |
| Vha464I | CTTAAG | 1 cut(s) | 563 |
| VneI | GTGCAC | 1 cut(s) | 86 |
| XapI | RAATTY | 1 cut(s) | 583 |