ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 61 - 176 | 6.3e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 789 |
| AccII | CGCG | 1 cut(s) | 72 |
| AciI | CCGC | 3 cut(s) | 48, 72, 263 |
| AclWI | GGATC | 2 cut(s) | 35, 120 |
| AcsI | RAATTY | 1 cut(s) | 342 |
| AcuI | CTGAAG | 1 cut(s) | 504 |
| AcyI | GRCGYC | 1 cut(s) | 786 |
| AfaI | GTAC | 2 cut(s) | 500, 816 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 140, 385 |
| AgsI | TTSAA | 3 cut(s) | 91, 437, 841 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 89, 121, 703, 735 |
| AluBI | AGCT | 5 cut(s) | 452, 592, 665, 801, 847 |
| AluI | AGCT | 5 cut(s) | 452, 592, 665, 801, 847 |
| Alw21I | GWGCWC | 1 cut(s) | 686 |
| Alw26I | GTCTC | 1 cut(s) | 84 |
| AlwI | GGATC | 2 cut(s) | 35, 120 |
| AoxI | GGCC | 2 cut(s) | 400, 514 |
| ApaI | GGGCCC | 1 cut(s) | 404 |
| ApeKI | GCWGC | 1 cut(s) | 662 |
| ApoI | RAATTY | 1 cut(s) | 342 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 776, 808 |
| AspLEI | GCGC | 1 cut(s) | 239 |
| AspS9I | GGNCC | 4 cut(s) | 260, 400, 401, 515 |
| AsuC2I | CCSGG | 3 cut(s) | 45, 349, 404 |
| AsuHPI | GGTGA | 2 cut(s) | 649, 794 |
| AvaII | GGWCC | 1 cut(s) | 260 |
| BaeGI | GKGCMC | 3 cut(s) | 340, 404, 750 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 204, 237 |
| BanII | GRGCYC | 1 cut(s) | 404 |
| Bbv12I | GWGCWC | 1 cut(s) | 686 |
| BbvI | GCAGC | 1 cut(s) | 674 |
| BccI | CCATC | 5 cut(s) | 29, 194, 194, 647, 701 |
| BceAI | ACGGC | 2 cut(s) | 33, 529 |
| BciVI | GTATCC | 1 cut(s) | 205 |
| BcnI | CCSGG | 3 cut(s) | 45, 349, 404 |
| BcoDI | GTCTC | 1 cut(s) | 84 |
| BfaI | CTAG | 1 cut(s) | 380 |
| BfmI | CTRYAG | 1 cut(s) | 190 |
| BfuI | GTATCC | 1 cut(s) | 205 |
| BisI | GCNGC | 1 cut(s) | 663 |
| BlsI | GCNGC | 1 cut(s) | 664 |
| Bme1390I | CCNGG | 3 cut(s) | 45, 349, 404 |
| Bme18I | GGWCC | 1 cut(s) | 260 |
| BmgT120I | GGNCC | 4 cut(s) | 260, 400, 401, 515 |
| BmiI | GGNNCC | 1 cut(s) | 402 |
| BmrFI | CCNGG | 3 cut(s) | 45, 349, 404 |
| BmsI | GCATC | 2 cut(s) | 118, 349 |
| Bpu10I | CCTNAGC | 1 cut(s) | 612 |
| BpuMI | CCSGG | 3 cut(s) | 45, 349, 404 |
| BsaBI | GATNNNNATC | 1 cut(s) | 39 |
| BsaHI | GRCGYC | 1 cut(s) | 786 |
| BsaJI | CCNNGG | 1 cut(s) | 160 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 140, 385 |
| Bse8I | GATNNNNATC | 1 cut(s) | 39 |
| BseDI | CCNNGG | 1 cut(s) | 160 |
| BseGI | GGATG | 2 cut(s) | 658, 712 |
| BseJI | GATNNNNATC | 1 cut(s) | 39 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 140, 385 |
| BseMII | CTCAG | 4 cut(s) | 74, 383, 441, 801 |
| BseRI | GAGGAG | 4 cut(s) | 20, 398, 572, 632 |
| BseSI | GKGCMC | 3 cut(s) | 340, 404, 750 |
| BseXI | GCAGC | 1 cut(s) | 674 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| BshFI | GGCC | 2 cut(s) | 402, 516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 686 |
| BsiSI | CCGG | 3 cut(s) | 44, 349, 404 |
| BslFI | GGGAC | 2 cut(s) | 293, 773 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 140, 385 |
| BsmAI | GTCTC | 1 cut(s) | 84 |
| BsmFI | GGGAC | 2 cut(s) | 293, 773 |
| BsmI | GAATGC | 1 cut(s) | 717 |
| BsnI | GGCC | 2 cut(s) | 402, 516 |
| Bsp120I | GGGCCC | 1 cut(s) | 400 |
| Bsp1286I | GDGCHC | 4 cut(s) | 340, 404, 686, 750 |
| Bsp143I | GATC | 3 cut(s) | 40, 112, 523 |
| Bsp19I | CCATGG | 1 cut(s) | 160 |
| BspACI | CCGC | 3 cut(s) | 48, 72, 263 |
| BspANI | GGCC | 2 cut(s) | 402, 516 |
| BspCNI | CTCAG | 4 cut(s) | 75, 382, 440, 802 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspHI | TCATGA | 1 cut(s) | 166 |
| BspLI | GGNNCC | 1 cut(s) | 402 |
| BspPI | GGATC | 2 cut(s) | 35, 120 |
| BssECI | CCNNGG | 1 cut(s) | 160 |
| BssMI | GATC | 3 cut(s) | 40, 112, 523 |
| BssNI | GRCGYC | 1 cut(s) | 786 |
| BssT1I | CCWWGG | 1 cut(s) | 160 |
| Bst6I | CTCTTC | 1 cut(s) | 867 |
| BstACI | GRCGYC | 1 cut(s) | 786 |
| BstC8I | GCNNGC | 1 cut(s) | 803 |
| BstDEI | CTNAG | 5 cut(s) | 83, 369, 427, 612, 810 |
| BstDSI | CCRYGG | 1 cut(s) | 160 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 383 |
| BstF5I | GGATG | 2 cut(s) | 658, 712 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstHHI | GCGC | 1 cut(s) | 239 |
| BstKTI | GATC | 3 cut(s) | 43, 115, 526 |
| BstMAI | GTCTC | 1 cut(s) | 84 |
| BstMBI | GATC | 3 cut(s) | 40, 112, 523 |
| BstNSI | RCATGY | 3 cut(s) | 497, 635, 662 |
| BstSCI | CCNGG | 3 cut(s) | 43, 347, 402 |
| BstSFI | CTRYAG | 1 cut(s) | 190 |
| BstSLI | GKGCMC | 3 cut(s) | 340, 404, 750 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 1 cut(s) | 674 |
| BstX2I | RGATCY | 2 cut(s) | 40, 112 |
| BstYI | RGATCY | 2 cut(s) | 40, 112 |
| BsuI | GTATCC | 1 cut(s) | 205 |
| BsuRI | GGCC | 2 cut(s) | 402, 516 |
| BtgI | CCRYGG | 1 cut(s) | 160 |
| BtsCI | GGATG | 2 cut(s) | 658, 712 |
| BtsIMutI | CAGTG | 2 cut(s) | 377, 435 |
| Cac8I | GCNNGC | 1 cut(s) | 803 |
| CciI | TCATGA | 1 cut(s) | 166 |
| CfoI | GCGC | 1 cut(s) | 239 |
| Cfr13I | GGNCC | 4 cut(s) | 260, 400, 401, 515 |
| CseI | GACGC | 1 cut(s) | 588 |
| Csp6I | GTAC | 2 cut(s) | 499, 815 |
| CviAII | CATG | 9 cut(s) | 161, 167, 494, 503, 632, 659, 703, 716, 866 |
| CviJI | RGCY | 9 cut(s) | 402, 426, 452, 516, 592, 611, 665, 801, 847 |
| CviKI_1 | RGCY | 9 cut(s) | 402, 426, 452, 516, 592, 611, 665, 801, 847 |
| CviQI | GTAC | 2 cut(s) | 499, 815 |
| DdeI | CTNAG | 5 cut(s) | 83, 369, 427, 612, 810 |
| DpnI | GATC | 3 cut(s) | 42, 114, 525 |
| DpnII | GATC | 3 cut(s) | 40, 112, 523 |
| Eam1104I | CTCTTC | 1 cut(s) | 867 |
| EarI | CTCTTC | 1 cut(s) | 867 |
| EciI | GGCGGA | 1 cut(s) | 63 |
| Eco130I | CCWWGG | 1 cut(s) | 160 |
| Eco24I | GRGCYC | 1 cut(s) | 404 |
| Eco47I | GGWCC | 1 cut(s) | 260 |
| Eco57I | CTGAAG | 1 cut(s) | 504 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 383 |
| EcoO109I | RGGNCCY | 1 cut(s) | 400 |
| EcoT14I | CCWWGG | 1 cut(s) | 160 |
| EcoT22I | ATGCAT | 1 cut(s) | 717 |
| EcoT38I | GRGCYC | 1 cut(s) | 404 |
| ErhI | CCWWGG | 1 cut(s) | 160 |
| FaeI | CATG | 9 cut(s) | 164, 170, 497, 506, 635, 662, 706, 719, 869 |
| FaqI | GGGAC | 2 cut(s) | 293, 773 |
| FatI | CATG | 9 cut(s) | 160, 166, 493, 502, 631, 658, 702, 715, 865 |
| FauI | CCCGC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 1 cut(s) | 663 |
| FokI | GGATG | 2 cut(s) | 665, 719 |
| FriOI | GRGCYC | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 1 cut(s) | 663 |
| FspBI | CTAG | 1 cut(s) | 380 |
| GlaI | GCGC | 1 cut(s) | 238 |
| GluI | GCNGC | 1 cut(s) | 663 |
| HaeIII | GGCC | 2 cut(s) | 402, 516 |
| HapII | CCGG | 3 cut(s) | 44, 349, 404 |
| HgaI | GACGC | 1 cut(s) | 588 |
| HhaI | GCGC | 1 cut(s) | 239 |
| Hin1I | GRCGYC | 1 cut(s) | 786 |
| Hin1II | CATG | 9 cut(s) | 164, 170, 497, 506, 635, 662, 706, 719, 869 |
| Hin6I | GCGC | 1 cut(s) | 237 |
| HinP1I | GCGC | 1 cut(s) | 237 |
| HindIII | AAGCTT | 1 cut(s) | 590 |
| HinfI | GANTC | 4 cut(s) | 11, 51, 67, 156 |
| HpaII | CCGG | 3 cut(s) | 44, 349, 404 |
| HphI | GGTGA | 2 cut(s) | 649, 794 |
| Hpy166II | GTNNAC | 4 cut(s) | 244, 411, 499, 578 |
| Hpy188I | TCNGA | 3 cut(s) | 84, 523, 811 |
| Hpy188III | TCNNGA | 1 cut(s) | 167 |
| Hpy8I | GTNNAC | 4 cut(s) | 244, 411, 499, 578 |
| HpyAV | CCTTC | 6 cut(s) | 53, 225, 528, 579, 634, 747 |
| HpyCH4IV | ACGT | 3 cut(s) | 439, 744, 786 |
| HpyCH4V | TGCA | 5 cut(s) | 493, 662, 702, 715, 805 |
| HpyF3I | CTNAG | 5 cut(s) | 83, 369, 427, 612, 810 |
| HpySE526I | ACGT | 3 cut(s) | 439, 744, 786 |
| Hsp92I | GRCGYC | 1 cut(s) | 786 |
| Hsp92II | CATG | 9 cut(s) | 164, 170, 497, 506, 635, 662, 706, 719, 869 |
| HspAI | GCGC | 1 cut(s) | 237 |
| Kzo9I | GATC | 3 cut(s) | 40, 112, 523 |
| LmnI | GCTCC | 3 cut(s) | 123, 689, 772 |
| LpnPI | CCDG | 6 cut(s) | 57, 251, 318, 362, 417, 763 |
| Lsp1109I | GCAGC | 1 cut(s) | 674 |
| LweI | GCATC | 2 cut(s) | 118, 349 |
| MaeI | CTAG | 1 cut(s) | 380 |
| MaeII | ACGT | 3 cut(s) | 439, 744, 786 |
| MaeIII | GTNAC | 2 cut(s) | 374, 782 |
| MalI | GATC | 3 cut(s) | 42, 114, 525 |
| MboI | GATC | 3 cut(s) | 40, 112, 523 |
| MboII | GAAGA | 2 cut(s) | 521, 884 |
| MfeI | CAATTG | 1 cut(s) | 104 |
| MflI | RGATCY | 2 cut(s) | 40, 112 |
| MhlI | GDGCHC | 4 cut(s) | 340, 404, 686, 750 |
| MluCI | AATT | 7 cut(s) | 104, 342, 534, 670, 693, 764, 854 |
| MlyI | GAGTC | 1 cut(s) | 45 |
| Mph1103I | ATGCAT | 1 cut(s) | 717 |
| MseI | TTAA | 7 cut(s) | 146, 285, 296, 483, 692, 759, 767 |
| MslI | CAYNNNNRTG | 2 cut(s) | 165, 780 |
| MspA1I | CMGCKG | 1 cut(s) | 265 |
| MspI | CCGG | 3 cut(s) | 44, 349, 404 |
| MspR9I | CCNGG | 3 cut(s) | 45, 349, 404 |
| MunI | CAATTG | 1 cut(s) | 104 |
| Mva1269I | GAATGC | 1 cut(s) | 717 |
| MvnI | CGCG | 1 cut(s) | 72 |
| NciI | CCSGG | 3 cut(s) | 45, 349, 404 |
| NcoI | CCATGG | 1 cut(s) | 160 |
| NdeII | GATC | 3 cut(s) | 40, 112, 523 |
| NlaIII | CATG | 9 cut(s) | 164, 170, 497, 506, 635, 662, 706, 719, 869 |
| NlaIV | GGNNCC | 1 cut(s) | 402 |
| NmuCI | GTSAC | 1 cut(s) | 782 |
| NsiI | ATGCAT | 1 cut(s) | 717 |
| NspI | RCATGY | 3 cut(s) | 497, 635, 662 |
| PagI | TCATGA | 1 cut(s) | 166 |
| PctI | GAATGC | 1 cut(s) | 717 |
| PfeI | GAWTC | 3 cut(s) | 11, 67, 156 |
| PkrI | GCNGC | 1 cut(s) | 664 |
| PleI | GAGTC | 1 cut(s) | 45 |
| PpsI | GAGTC | 1 cut(s) | 45 |
| PspN4I | GGNNCC | 1 cut(s) | 402 |
| PspOMI | GGGCCC | 1 cut(s) | 400 |
| PspPI | GGNCC | 4 cut(s) | 260, 400, 401, 515 |
| PsuI | RGATCY | 2 cut(s) | 40, 112 |
| RsaI | GTAC | 2 cut(s) | 500, 816 |
| RsaNI | GTAC | 2 cut(s) | 499, 815 |
| RseI | CAYNNNNRTG | 2 cut(s) | 165, 780 |
| SaqAI | TTAA | 7 cut(s) | 146, 285, 296, 483, 692, 759, 767 |
| SatI | GCNGC | 1 cut(s) | 663 |
| Sau3AI | GATC | 3 cut(s) | 40, 112, 523 |
| Sau96I | GGNCC | 4 cut(s) | 260, 400, 401, 515 |
| SchI | GAGTC | 1 cut(s) | 45 |
| ScrFI | CCNGG | 3 cut(s) | 45, 349, 404 |
| SduI | GDGCHC | 4 cut(s) | 340, 404, 686, 750 |
| SfaNI | GCATC | 2 cut(s) | 118, 349 |
| SfcI | CTRYAG | 1 cut(s) | 190 |
| SinI | GGWCC | 1 cut(s) | 260 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 165, 780 |
| Sse9I | AATT | 7 cut(s) | 104, 342, 534, 670, 693, 764, 854 |
| SsiI | CCGC | 3 cut(s) | 48, 72, 263 |
| SspI | AATATT | 1 cut(s) | 294 |
| SspMI | CTAG | 1 cut(s) | 380 |
| StyD4I | CCNGG | 3 cut(s) | 43, 347, 402 |
| StyI | CCWWGG | 1 cut(s) | 160 |
| TaiI | ACGT | 3 cut(s) | 442, 747, 789 |
| TaqI | TCGA | 1 cut(s) | 396 |
| TasI | AATT | 7 cut(s) | 104, 342, 534, 670, 693, 764, 854 |
| TfiI | GAWTC | 3 cut(s) | 11, 67, 156 |
| Tru1I | TTAA | 7 cut(s) | 146, 285, 296, 483, 692, 759, 767 |
| Tru9I | TTAA | 7 cut(s) | 146, 285, 296, 483, 692, 759, 767 |
| TscAI | CASTG | 2 cut(s) | 377, 435 |
| TseFI | GTSAC | 1 cut(s) | 782 |
| TseI | GCWGC | 1 cut(s) | 662 |
| Tsp45I | GTSAC | 1 cut(s) | 782 |
| TspDTI | ATGAA | 2 cut(s) | 303, 529 |
| TspRI | CASTG | 2 cut(s) | 377, 435 |
| VpaK11BI | GGWCC | 1 cut(s) | 260 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 383 |
| XapI | RAATTY | 1 cut(s) | 342 |
| XceI | RCATGY | 3 cut(s) | 497, 635, 662 |
| XspI | CTAG | 1 cut(s) | 380 |
| ZraI | GACGTC | 1 cut(s) | 787 |
| Zsp2I | ATGCAT | 1 cut(s) | 717 |