ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 411 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 612 |
| AccII | CGCG | 1 cut(s) | 88 |
| AciI | CCGC | 4 cut(s) | 242, 386, 419, 513 |
| AclWI | GGATC | 3 cut(s) | 375, 597, 759 |
| AcoI | YGGCCR | 1 cut(s) | 510 |
| AcsI | RAATTY | 4 cut(s) | 493, 799, 909, 1171 |
| AcuI | CTGAAG | 1 cut(s) | 1249 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 222, 487, 582, 612, 973 |
| AflII | CTTAAG | 1 cut(s) | 782 |
| AgsI | TTSAA | 7 cut(s) | 53, 169, 430, 602, 1070, 1124, 1330 |
| AjnI | CCWGG | 4 cut(s) | 557, 767, 959, 1090 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 167, 199, 1199, 1231 |
| AluBI | AGCT | 5 cut(s) | 44, 160, 203, 1058, 1256 |
| AluI | AGCT | 5 cut(s) | 44, 160, 203, 1058, 1256 |
| Alw26I | GTCTC | 3 cut(s) | 384, 447, 741 |
| AlwI | GGATC | 3 cut(s) | 375, 597, 759 |
| AoxI | GGCC | 5 cut(s) | 510, 963, 1093, 1196, 1268 |
| ApaI | GGGCCC | 1 cut(s) | 967 |
| ApeKI | GCWGC | 5 cut(s) | 4, 338, 1030, 1058, 1256 |
| ApoI | RAATTY | 4 cut(s) | 493, 799, 909, 1171 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 495, 1303 |
| AspLEI | GCGC | 1 cut(s) | 90 |
| AspS9I | GGNCC | 4 cut(s) | 963, 964, 1094, 1197 |
| AsuC2I | CCSGG | 2 cut(s) | 294, 1097 |
| AsuHPI | GGTGA | 2 cut(s) | 1153, 1347 |
| BaeGI | GKGCMC | 1 cut(s) | 967 |
| BanII | GRGCYC | 2 cut(s) | 67, 967 |
| BbsI | GAAGAC | 1 cut(s) | 928 |
| BbvI | GCAGC | 4 cut(s) | 350, 1042, 1045, 1243 |
| BccI | CCATC | 3 cut(s) | 782, 822, 1094 |
| BciT130I | CCWGG | 4 cut(s) | 559, 769, 961, 1092 |
| BclI | TGATCA | 1 cut(s) | 372 |
| BcnI | CCSGG | 2 cut(s) | 294, 1097 |
| BcoDI | GTCTC | 3 cut(s) | 384, 447, 741 |
| BfaI | CTAG | 3 cut(s) | 20, 122, 1005 |
| BfrI | CTTAAG | 1 cut(s) | 782 |
| BfuAI | ACCTGC | 1 cut(s) | 411 |
| BisI | GCNGC | 6 cut(s) | 5, 339, 513, 1031, 1059, 1257 |
| BlsI | GCNGC | 6 cut(s) | 6, 340, 514, 1032, 1060, 1258 |
| Bme1390I | CCNGG | 6 cut(s) | 294, 559, 769, 961, 1092, 1097 |
| BmgT120I | GGNCC | 4 cut(s) | 963, 964, 1094, 1197 |
| BmiI | GGNNCC | 1 cut(s) | 965 |
| BmrFI | CCNGG | 6 cut(s) | 294, 559, 769, 961, 1092, 1097 |
| BmsI | GCATC | 3 cut(s) | 946, 973, 1084 |
| BpiI | GAAGAC | 1 cut(s) | 928 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 236, 268, 1337 |
| BpmI | CTGGAG | 1 cut(s) | 480 |
| BpuEI | CTTGAG | 3 cut(s) | 189, 429, 1199 |
| BpuMI | CCSGG | 2 cut(s) | 294, 1097 |
| Bsa29I | ATCGAT | 2 cut(s) | 72, 273 |
| BsaJI | CCNNGG | 6 cut(s) | 407, 558, 576, 657, 768, 960 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 222, 487, 582, 612, 973 |
| Bse118I | RCCGGY | 1 cut(s) | 892 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| Bse3DI | GCAATG | 2 cut(s) | 670, 1291 |
| BseBI | CCWGG | 4 cut(s) | 559, 769, 961, 1092 |
| BseCI | ATCGAT | 2 cut(s) | 72, 273 |
| BseDI | CCNNGG | 6 cut(s) | 407, 558, 576, 657, 768, 960 |
| BseGI | GGATG | 6 cut(s) | 234, 652, 793, 1075, 1105, 1156 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 222, 487, 582, 612, 973 |
| BseMI | GCAATG | 2 cut(s) | 670, 1291 |
| BseMII | CTCAG | 2 cut(s) | 936, 1335 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseRI | GAGGAG | 2 cut(s) | 362, 710 |
| BseSI | GKGCMC | 1 cut(s) | 967 |
| BseXI | GCAGC | 4 cut(s) | 350, 1042, 1045, 1243 |
| BseYI | CCCAGC | 1 cut(s) | 160 |
| BsgI | GTGCAG | 3 cut(s) | 246, 1049, 1242 |
| Bsh1236I | CGCG | 1 cut(s) | 88 |
| BshFI | GGCC | 5 cut(s) | 512, 965, 1095, 1198, 1270 |
| BshVI | ATCGAT | 2 cut(s) | 72, 273 |
| BsiSI | CCGG | 3 cut(s) | 293, 893, 1097 |
| BslFI | GGGAC | 2 cut(s) | 806, 1093 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 222, 487, 582, 612, 973 |
| BsmAI | GTCTC | 3 cut(s) | 384, 447, 741 |
| BsmFI | GGGAC | 2 cut(s) | 806, 1093 |
| BsnI | GGCC | 5 cut(s) | 512, 965, 1095, 1198, 1270 |
| Bsp120I | GGGCCC | 1 cut(s) | 963 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 967 |
| Bsp143I | GATC | 7 cut(s) | 367, 372, 589, 667, 684, 764, 1347 |
| BspACI | CCGC | 4 cut(s) | 242, 386, 419, 513 |
| BspANI | GGCC | 5 cut(s) | 512, 965, 1095, 1198, 1270 |
| BspCNI | CTCAG | 2 cut(s) | 937, 1336 |
| BspDI | ATCGAT | 2 cut(s) | 72, 273 |
| BspFNI | CGCG | 1 cut(s) | 88 |
| BspLI | GGNNCC | 1 cut(s) | 965 |
| BspMI | ACCTGC | 1 cut(s) | 411 |
| BspPI | GGATC | 3 cut(s) | 375, 597, 759 |
| BspQI | GCTCTTC | 2 cut(s) | 259, 830 |
| BspTI | CTTAAG | 1 cut(s) | 782 |
| BsrDI | GCAATG | 2 cut(s) | 670, 1291 |
| BsrFI | RCCGGY | 1 cut(s) | 892 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssAI | RCCGGY | 1 cut(s) | 892 |
| BssECI | CCNNGG | 6 cut(s) | 407, 558, 576, 657, 768, 960 |
| BssMI | GATC | 7 cut(s) | 367, 372, 589, 667, 684, 764, 1347 |
| BssT1I | CCWWGG | 2 cut(s) | 407, 576 |
| Bst2UI | CCWGG | 4 cut(s) | 559, 769, 961, 1092 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 735, 934, 976 |
| Bst6I | CTCTTC | 6 cut(s) | 259, 466, 629, 654, 830, 946 |
| BstAFI | CTTAAG | 1 cut(s) | 782 |
| BstC8I | GCNNGC | 2 cut(s) | 158, 894 |
| BstDEI | CTNAG | 2 cut(s) | 945, 1344 |
| BstF5I | GGATG | 6 cut(s) | 234, 652, 793, 1075, 1105, 1156 |
| BstFNI | CGCG | 1 cut(s) | 88 |
| BstHHI | GCGC | 1 cut(s) | 90 |
| BstKTI | GATC | 7 cut(s) | 370, 375, 592, 670, 687, 767, 1350 |
| BstMAI | GTCTC | 3 cut(s) | 384, 447, 741 |
| BstMBI | GATC | 7 cut(s) | 367, 372, 589, 667, 684, 764, 1347 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 889 |
| BstNI | CCWGG | 4 cut(s) | 559, 769, 961, 1092 |
| BstNSI | RCATGY | 1 cut(s) | 716 |
| BstSCI | CCNGG | 6 cut(s) | 292, 557, 767, 959, 1090, 1095 |
| BstSLI | GKGCMC | 1 cut(s) | 967 |
| BstUI | CGCG | 1 cut(s) | 88 |
| BstV1I | GCAGC | 4 cut(s) | 350, 1042, 1045, 1243 |
| BstV2I | GAAGAC | 1 cut(s) | 928 |
| BstX2I | RGATCY | 2 cut(s) | 367, 764 |
| BstYI | RGATCY | 2 cut(s) | 367, 764 |
| Bsu15I | ATCGAT | 2 cut(s) | 72, 273 |
| BsuRI | GGCC | 5 cut(s) | 512, 965, 1095, 1198, 1270 |
| BsuTUI | ATCGAT | 2 cut(s) | 72, 273 |
| BtsCI | GGATG | 6 cut(s) | 234, 652, 793, 1075, 1105, 1156 |
| BtsIMutI | CAGTG | 1 cut(s) | 318 |
| BveI | ACCTGC | 1 cut(s) | 411 |
| Cac8I | GCNNGC | 2 cut(s) | 158, 894 |
| CfoI | GCGC | 1 cut(s) | 90 |
| Cfr10I | RCCGGY | 1 cut(s) | 892 |
| Cfr13I | GGNCC | 4 cut(s) | 963, 964, 1094, 1197 |
| ClaI | ATCGAT | 2 cut(s) | 72, 273 |
| CseI | GACGC | 1 cut(s) | 94 |
| CviAII | CATG | 7 cut(s) | 8, 239, 363, 396, 713, 1012, 1147 |
| DdeI | CTNAG | 2 cut(s) | 945, 1344 |
| DpnI | GATC | 7 cut(s) | 369, 374, 591, 669, 686, 766, 1349 |
| DpnII | GATC | 7 cut(s) | 367, 372, 589, 667, 684, 764, 1347 |
| EaeI | YGGCCR | 1 cut(s) | 510 |
| Eam1104I | CTCTTC | 6 cut(s) | 259, 466, 629, 654, 830, 946 |
| EarI | CTCTTC | 6 cut(s) | 259, 466, 629, 654, 830, 946 |
| Eco130I | CCWWGG | 2 cut(s) | 407, 576 |
| Eco24I | GRGCYC | 2 cut(s) | 67, 967 |
| Eco57I | CTGAAG | 1 cut(s) | 1249 |
| EcoO109I | RGGNCCY | 2 cut(s) | 963, 964 |
| EcoRII | CCWGG | 4 cut(s) | 557, 767, 959, 1090 |
| EcoT14I | CCWWGG | 2 cut(s) | 407, 576 |
| EcoT22I | ATGCAT | 1 cut(s) | 1077 |
| EcoT38I | GRGCYC | 2 cut(s) | 67, 967 |
| ErhI | CCWWGG | 2 cut(s) | 407, 576 |
| FaeI | CATG | 7 cut(s) | 11, 242, 366, 399, 716, 1015, 1150 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 920, 952 |
| FaqI | GGGAC | 2 cut(s) | 806, 1093 |
| FatI | CATG | 7 cut(s) | 7, 238, 362, 395, 712, 1011, 1146 |
| FauI | CCCGC | 1 cut(s) | 412 |
| FbaI | TGATCA | 1 cut(s) | 372 |
| Fnu4HI | GCNGC | 6 cut(s) | 5, 339, 513, 1031, 1059, 1257 |
| FokI | GGATG | 6 cut(s) | 221, 639, 800, 1062, 1112, 1163 |
| FriOI | GRGCYC | 2 cut(s) | 67, 967 |
| Fsp4HI | GCNGC | 6 cut(s) | 5, 339, 513, 1031, 1059, 1257 |
| FspBI | CTAG | 3 cut(s) | 20, 122, 1005 |
| GlaI | GCGC | 1 cut(s) | 89 |
| GluI | GCNGC | 6 cut(s) | 5, 339, 513, 1031, 1059, 1257 |
| GsaI | CCCAGC | 1 cut(s) | 164 |
| GsuI | CTGGAG | 1 cut(s) | 480 |
| HaeIII | GGCC | 5 cut(s) | 512, 965, 1095, 1198, 1270 |
| HapII | CCGG | 3 cut(s) | 293, 893, 1097 |
| HgaI | GACGC | 1 cut(s) | 94 |
| HhaI | GCGC | 1 cut(s) | 90 |
| Hin1II | CATG | 7 cut(s) | 11, 242, 366, 399, 716, 1015, 1150 |
| Hin6I | GCGC | 1 cut(s) | 88 |
| HinP1I | GCGC | 1 cut(s) | 88 |
| HincII | GTYRAC | 2 cut(s) | 290, 918 |
| HindII | GTYRAC | 2 cut(s) | 290, 918 |
| HinfI | GANTC | 4 cut(s) | 662, 1019, 1087, 1202 |
| HpaII | CCGG | 3 cut(s) | 293, 893, 1097 |
| HphI | GGTGA | 2 cut(s) | 1153, 1347 |
| Hpy166II | GTNNAC | 5 cut(s) | 290, 318, 467, 555, 918 |
| Hpy188I | TCNGA | 6 cut(s) | 372, 501, 661, 667, 946, 1345 |
| Hpy188III | TCNNGA | 3 cut(s) | 82, 459, 468 |
| Hpy8I | GTNNAC | 5 cut(s) | 290, 318, 467, 555, 918 |
| HpyAV | CCTTC | 1 cut(s) | 105 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 735, 934, 976 |
| HpyCH4IV | ACGT | 1 cut(s) | 1214 |
| HpyCH4V | TGCA | 8 cut(s) | 7, 263, 338, 399, 1030, 1075, 1259, 1284 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 889 |
| HpyF3I | CTNAG | 2 cut(s) | 945, 1344 |
| HpySE526I | ACGT | 1 cut(s) | 1214 |
| Hsp92II | CATG | 7 cut(s) | 11, 242, 366, 399, 716, 1015, 1150 |
| HspAI | GCGC | 1 cut(s) | 88 |
| KroI | GCCGGC | 1 cut(s) | 892 |
| KroNI | GCCGGC | 1 cut(s) | 894 |
| Ksp22I | TGATCA | 1 cut(s) | 372 |
| Kzo9I | GATC | 7 cut(s) | 367, 372, 589, 667, 684, 764, 1347 |
| LguI | GCTCTTC | 2 cut(s) | 259, 830 |
| LmnI | GCTCC | 2 cut(s) | 349, 697 |
| Lsp1109I | GCAGC | 4 cut(s) | 350, 1042, 1045, 1243 |
| LweI | GCATC | 3 cut(s) | 946, 973, 1084 |
| MaeI | CTAG | 3 cut(s) | 20, 122, 1005 |
| MaeII | ACGT | 1 cut(s) | 1214 |
| MaeIII | GTNAC | 3 cut(s) | 563, 827, 1000 |
| MalI | GATC | 7 cut(s) | 369, 374, 591, 669, 686, 766, 1349 |
| MboI | GATC | 7 cut(s) | 367, 372, 589, 667, 684, 764, 1347 |
| MfeI | CAATTG | 1 cut(s) | 1272 |
| MflI | RGATCY | 2 cut(s) | 367, 764 |
| MhlI | GDGCHC | 2 cut(s) | 67, 967 |
| MluCI | AATT | 7 cut(s) | 493, 799, 884, 909, 1171, 1272, 1299 |
| MlyI | GAGTC | 1 cut(s) | 1096 |
| MmeI | TCCRAC | 2 cut(s) | 567, 1230 |
| Mph1103I | ATGCAT | 1 cut(s) | 1077 |
| MroNI | GCCGGC | 1 cut(s) | 892 |
| MroXI | GAANNNNTTC | 2 cut(s) | 495, 1303 |
| MseI | TTAA | 4 cut(s) | 413, 783, 860, 927 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 361 |
| MspCI | CTTAAG | 1 cut(s) | 782 |
| MspI | CCGG | 3 cut(s) | 293, 893, 1097 |
| MspR9I | CCNGG | 6 cut(s) | 294, 559, 769, 961, 1092, 1097 |
| MunI | CAATTG | 1 cut(s) | 1272 |
| MvaI | CCWGG | 4 cut(s) | 559, 769, 961, 1092 |
| MvnI | CGCG | 1 cut(s) | 88 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 889 |
| NaeI | GCCGGC | 1 cut(s) | 894 |
| NciI | CCSGG | 2 cut(s) | 294, 1097 |
| NdeII | GATC | 7 cut(s) | 367, 372, 589, 667, 684, 764, 1347 |
| NgoMIV | GCCGGC | 1 cut(s) | 892 |
| NlaIII | CATG | 7 cut(s) | 11, 242, 366, 399, 716, 1015, 1150 |
| NlaIV | GGNNCC | 1 cut(s) | 965 |
| NsiI | ATGCAT | 1 cut(s) | 1077 |
| NspI | RCATGY | 1 cut(s) | 716 |
| PciSI | GCTCTTC | 2 cut(s) | 259, 830 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 349 |
| PdiI | GCCGGC | 1 cut(s) | 894 |
| PdmI | GAANNNNTTC | 2 cut(s) | 495, 1303 |
| PfeI | GAWTC | 3 cut(s) | 662, 1019, 1202 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 612 |
| PkrI | GCNGC | 6 cut(s) | 6, 340, 514, 1032, 1060, 1258 |
| PleI | GAGTC | 1 cut(s) | 1095 |
| PpsI | GAGTC | 1 cut(s) | 1095 |
| Psp6I | CCWGG | 4 cut(s) | 557, 767, 959, 1090 |
| PspFI | CCCAGC | 1 cut(s) | 160 |
| PspGI | CCWGG | 4 cut(s) | 557, 767, 959, 1090 |
| PspN4I | GGNNCC | 1 cut(s) | 965 |
| PspOMI | GGGCCC | 1 cut(s) | 963 |
| PspPI | GGNCC | 4 cut(s) | 963, 964, 1094, 1197 |
| PsuI | RGATCY | 2 cut(s) | 367, 764 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 361 |
| SapI | GCTCTTC | 2 cut(s) | 259, 830 |
| SaqAI | TTAA | 4 cut(s) | 413, 783, 860, 927 |
| SatI | GCNGC | 6 cut(s) | 5, 339, 513, 1031, 1059, 1257 |
| Sau3AI | GATC | 7 cut(s) | 367, 372, 589, 667, 684, 764, 1347 |
| Sau96I | GGNCC | 4 cut(s) | 963, 964, 1094, 1197 |
| SchI | GAGTC | 1 cut(s) | 1096 |
| ScrFI | CCNGG | 6 cut(s) | 294, 559, 769, 961, 1092, 1097 |
| SduI | GDGCHC | 2 cut(s) | 67, 967 |
| SfaNI | GCATC | 3 cut(s) | 946, 973, 1084 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 361 |
| SmlI | CTYRAG | 4 cut(s) | 204, 444, 782, 1178 |
| SmoI | CTYRAG | 4 cut(s) | 204, 444, 782, 1178 |
| Sse9I | AATT | 7 cut(s) | 493, 799, 884, 909, 1171, 1272, 1299 |
| SsiI | CCGC | 4 cut(s) | 242, 386, 419, 513 |
| SspI | AATATT | 3 cut(s) | 178, 681, 1130 |
| SspMI | CTAG | 3 cut(s) | 20, 122, 1005 |
| StyD4I | CCNGG | 6 cut(s) | 292, 557, 767, 959, 1090, 1095 |
| StyI | CCWWGG | 2 cut(s) | 407, 576 |
| TaaI | ACNGT | 4 cut(s) | 32, 735, 934, 976 |
| TaiI | ACGT | 1 cut(s) | 1217 |
| TaqI | TCGA | 6 cut(s) | 72, 273, 637, 687, 888, 1297 |
| TasI | AATT | 7 cut(s) | 493, 799, 884, 909, 1171, 1272, 1299 |
| TauI | GCSGC | 1 cut(s) | 515 |
| TfiI | GAWTC | 3 cut(s) | 662, 1019, 1202 |
| Tru1I | TTAA | 4 cut(s) | 413, 783, 860, 927 |
| Tru9I | TTAA | 4 cut(s) | 413, 783, 860, 927 |
| TscAI | CASTG | 1 cut(s) | 325 |
| TseI | GCWGC | 5 cut(s) | 4, 338, 1030, 1058, 1256 |
| TspDTI | ATGAA | 5 cut(s) | 320, 641, 1028, 1032, 1062 |
| TspRI | CASTG | 1 cut(s) | 325 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 612 |
| Vha464I | CTTAAG | 1 cut(s) | 782 |
| XapI | RAATTY | 4 cut(s) | 493, 799, 909, 1171 |
| XceI | RCATGY | 1 cut(s) | 716 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 583 |
| XmnI | GAANNNNTTC | 2 cut(s) | 495, 1303 |
| XspI | CTAG | 3 cut(s) | 20, 122, 1005 |
| Zsp2I | ATGCAT | 1 cut(s) | 1077 |