E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 648 |
| AarI | CACCTGC | 1 cut(s) | 698 |
| Acc36I | ACCTGC | 1 cut(s) | 698 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 953 |
| AccBSI | CCGCTC | 1 cut(s) | 842 |
| AciI | CCGC | 7 cut(s) | 100, 422, 510, 566, 656, 840, 888 |
| AclWI | GGATC | 3 cut(s) | 583, 671, 781 |
| AcsI | RAATTY | 1 cut(s) | 74 |
| AfaI | GTAC | 4 cut(s) | 157, 187, 768, 788 |
| AfeI | AGCGCT | 2 cut(s) | 403, 926 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 953 |
| AgsI | TTSAA | 6 cut(s) | 206, 280, 553, 614, 850, 894 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 874, 906 |
| AluBI | AGCT | 9 cut(s) | 36, 47, 191, 212, 410, 634, 670, 701, 725 |
| AluI | AGCT | 9 cut(s) | 36, 47, 191, 212, 410, 634, 670, 701, 725 |
| Alw21I | GWGCWC | 1 cut(s) | 672 |
| Alw26I | GTCTC | 1 cut(s) | 953 |
| AlwI | GGATC | 3 cut(s) | 583, 671, 781 |
| Ama87I | CYCGRG | 1 cut(s) | 911 |
| Aor51HI | AGCGCT | 2 cut(s) | 403, 926 |
| ApeKI | GCWGC | 5 cut(s) | 251, 443, 518, 536, 631 |
| ApoI | RAATTY | 1 cut(s) | 74 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 89, 121 |
| AspLEI | GCGC | 2 cut(s) | 404, 927 |
| AspS9I | GGNCC | 3 cut(s) | 5, 833, 860 |
| AsuHPI | GGTGA | 1 cut(s) | 968 |
| AvaI | CYCGRG | 1 cut(s) | 911 |
| AvaII | GGWCC | 3 cut(s) | 5, 833, 860 |
| BanII | GRGCYC | 1 cut(s) | 672 |
| BauI | CACGAG | 1 cut(s) | 255 |
| Bbv12I | GWGCWC | 1 cut(s) | 672 |
| BbvI | GCAGC | 5 cut(s) | 238, 430, 505, 523, 643 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 9, 43, 236, 270 |
| BciVI | GTATCC | 1 cut(s) | 563 |
| BcoDI | GTCTC | 1 cut(s) | 953 |
| BfoI | RGCGCY | 2 cut(s) | 405, 928 |
| BfuAI | ACCTGC | 1 cut(s) | 698 |
| BfuI | GTATCC | 1 cut(s) | 563 |
| BisI | GCNGC | 6 cut(s) | 252, 444, 519, 537, 632, 657 |
| BlsI | GCNGC | 6 cut(s) | 253, 445, 520, 538, 633, 658 |
| Bme18I | GGWCC | 3 cut(s) | 5, 833, 860 |
| BmeT110I | CYCGRG | 1 cut(s) | 911 |
| BmgT120I | GGNCC | 3 cut(s) | 5, 833, 860 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmsI | GCATC | 4 cut(s) | 49, 122, 477, 595 |
| BpmI | CTGGAG | 1 cut(s) | 741 |
| Bpu10I | CCTNAGC | 1 cut(s) | 540 |
| BsaAI | YACGTR | 1 cut(s) | 155 |
| BsaBI | GATNNNNATC | 1 cut(s) | 574 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 953 |
| Bse118I | RCCGGY | 1 cut(s) | 325 |
| Bse1I | ACTGG | 2 cut(s) | 724, 784 |
| Bse3DI | GCAATG | 1 cut(s) | 438 |
| Bse8I | GATNNNNATC | 1 cut(s) | 574 |
| BseGI | GGATG | 2 cut(s) | 492, 506 |
| BseJI | GATNNNNATC | 1 cut(s) | 574 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 953 |
| BseMI | GCAATG | 1 cut(s) | 438 |
| BseMII | CTCAG | 2 cut(s) | 389, 672 |
| BseNI | ACTGG | 2 cut(s) | 724, 784 |
| BseXI | GCAGC | 5 cut(s) | 238, 430, 505, 523, 643 |
| BsiHKAI | GWGCWC | 1 cut(s) | 672 |
| BsiHKCI | CYCGRG | 1 cut(s) | 911 |
| BsiSI | CCGG | 2 cut(s) | 42, 326 |
| BslFI | GGGAC | 1 cut(s) | 297 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 953 |
| BsmAI | GTCTC | 1 cut(s) | 953 |
| BsmFI | GGGAC | 1 cut(s) | 297 |
| BsmI | GAATGC | 1 cut(s) | 691 |
| BsoBI | CYCGRG | 1 cut(s) | 911 |
| Bsp1286I | GDGCHC | 1 cut(s) | 672 |
| Bsp143I | GATC | 4 cut(s) | 575, 676, 773, 917 |
| BspACI | CCGC | 7 cut(s) | 100, 422, 510, 566, 656, 840, 888 |
| BspCNI | CTCAG | 2 cut(s) | 390, 673 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspMI | ACCTGC | 1 cut(s) | 698 |
| BspPI | GGATC | 3 cut(s) | 583, 671, 781 |
| BsrBI | CCGCTC | 1 cut(s) | 842 |
| BsrDI | GCAATG | 1 cut(s) | 438 |
| BsrFI | RCCGGY | 1 cut(s) | 325 |
| BsrI | ACTGG | 2 cut(s) | 724, 784 |
| BssAI | RCCGGY | 1 cut(s) | 325 |
| BssMI | GATC | 4 cut(s) | 575, 676, 773, 917 |
| BssSI | CACGAG | 1 cut(s) | 255 |
| Bst2BI | CACGAG | 1 cut(s) | 255 |
| Bst4CI | ACNGT | 3 cut(s) | 806, 868, 952 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 487 |
| BstBAI | YACGTR | 1 cut(s) | 155 |
| BstC8I | GCNNGC | 2 cut(s) | 125, 249 |
| BstDEI | CTNAG | 3 cut(s) | 398, 540, 681 |
| BstF5I | GGATG | 2 cut(s) | 492, 506 |
| BstH2I | RGCGCY | 2 cut(s) | 405, 928 |
| BstHHI | GCGC | 2 cut(s) | 404, 927 |
| BstKTI | GATC | 4 cut(s) | 578, 679, 776, 920 |
| BstMAI | GTCTC | 1 cut(s) | 953 |
| BstMBI | GATC | 4 cut(s) | 575, 676, 773, 917 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 487, 496, 518, 595 |
| BstNSI | RCATGY | 2 cut(s) | 66, 127 |
| BstSNI | TACGTA | 1 cut(s) | 155 |
| BstV1I | GCAGC | 5 cut(s) | 238, 430, 505, 523, 643 |
| BstX2I | RGATCY | 1 cut(s) | 773 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 763 |
| BstYI | RGATCY | 1 cut(s) | 773 |
| BsuI | GTATCC | 1 cut(s) | 563 |
| BtsCI | GGATG | 2 cut(s) | 492, 506 |
| BtsIMutI | CAGTG | 1 cut(s) | 873 |
| BveI | ACCTGC | 1 cut(s) | 698 |
| Cac8I | GCNNGC | 2 cut(s) | 125, 249 |
| CfoI | GCGC | 2 cut(s) | 404, 927 |
| Cfr10I | RCCGGY | 1 cut(s) | 325 |
| Cfr13I | GGNCC | 3 cut(s) | 5, 833, 860 |
| Csp6I | GTAC | 4 cut(s) | 156, 186, 767, 787 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 721, 756 |
| CviAII | CATG | 2 cut(s) | 63, 124 |
| CviQI | GTAC | 4 cut(s) | 156, 186, 767, 787 |
| DdeI | CTNAG | 3 cut(s) | 398, 540, 681 |
| DpnI | GATC | 4 cut(s) | 577, 678, 775, 919 |
| DpnII | GATC | 4 cut(s) | 575, 676, 773, 917 |
| EciI | GGCGGA | 1 cut(s) | 499 |
| Ecl136II | GAGCTC | 1 cut(s) | 670 |
| Eco105I | TACGTA | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 1 cut(s) | 672 |
| Eco47I | GGWCC | 3 cut(s) | 5, 833, 860 |
| Eco47III | AGCGCT | 2 cut(s) | 403, 926 |
| Eco53kI | GAGCTC | 1 cut(s) | 670 |
| Eco88I | CYCGRG | 1 cut(s) | 911 |
| EcoICRI | GAGCTC | 1 cut(s) | 670 |
| EcoO109I | RGGNCCY | 2 cut(s) | 5, 833 |
| EcoT22I | ATGCAT | 1 cut(s) | 64 |
| EcoT38I | GRGCYC | 1 cut(s) | 672 |
| FaeI | CATG | 2 cut(s) | 66, 127 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 533, 565 |
| FaqI | GGGAC | 1 cut(s) | 297 |
| FatI | CATG | 2 cut(s) | 62, 123 |
| FauI | CCCGC | 3 cut(s) | 415, 559, 847 |
| Fnu4HI | GCNGC | 6 cut(s) | 252, 444, 519, 537, 632, 657 |
| FokI | GGATG | 2 cut(s) | 493, 499 |
| FriOI | GRGCYC | 1 cut(s) | 672 |
| Fsp4HI | GCNGC | 6 cut(s) | 252, 444, 519, 537, 632, 657 |
| GlaI | GCGC | 2 cut(s) | 403, 926 |
| GluI | GCNGC | 6 cut(s) | 252, 444, 519, 537, 632, 657 |
| GsuI | CTGGAG | 1 cut(s) | 741 |
| HaeII | RGCGCY | 2 cut(s) | 405, 928 |
| HapII | CCGG | 2 cut(s) | 42, 326 |
| HhaI | GCGC | 2 cut(s) | 404, 927 |
| Hin1II | CATG | 2 cut(s) | 66, 127 |
| Hin6I | GCGC | 2 cut(s) | 402, 925 |
| HinP1I | GCGC | 2 cut(s) | 402, 925 |
| HincII | GTYRAC | 1 cut(s) | 802 |
| HindII | GTYRAC | 1 cut(s) | 802 |
| HinfI | GANTC | 1 cut(s) | 558 |
| HpaII | CCGG | 2 cut(s) | 42, 326 |
| HphI | GGTGA | 1 cut(s) | 968 |
| Hpy166II | GTNNAC | 1 cut(s) | 802 |
| Hpy188I | TCNGA | 6 cut(s) | 31, 58, 81, 399, 639, 813 |
| Hpy188III | TCNNGA | 6 cut(s) | 277, 294, 389, 680, 911, 913 |
| Hpy8I | GTNNAC | 1 cut(s) | 802 |
| HpyAV | CCTTC | 3 cut(s) | 274, 824, 844 |
| HpyCH4III | ACNGT | 3 cut(s) | 806, 868, 952 |
| HpyCH4IV | ACGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 9 cut(s) | 62, 113, 127, 247, 335, 490, 608, 707, 713 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 487, 496, 518, 595 |
| HpyF3I | CTNAG | 3 cut(s) | 398, 540, 681 |
| HpySE526I | ACGT | 1 cut(s) | 154 |
| Hsp92II | CATG | 2 cut(s) | 66, 127 |
| HspAI | GCGC | 2 cut(s) | 402, 925 |
| Kzo9I | GATC | 4 cut(s) | 575, 676, 773, 917 |
| LmnI | GCTCC | 3 cut(s) | 44, 698, 722 |
| Lsp1109I | GCAGC | 5 cut(s) | 238, 430, 505, 523, 643 |
| LweI | GCATC | 4 cut(s) | 49, 122, 477, 595 |
| MaeII | ACGT | 1 cut(s) | 154 |
| MalI | GATC | 4 cut(s) | 577, 678, 775, 919 |
| MbiI | CCGCTC | 1 cut(s) | 842 |
| MboI | GATC | 4 cut(s) | 575, 676, 773, 917 |
| MboII | GAAGA | 2 cut(s) | 42, 839 |
| MflI | RGATCY | 1 cut(s) | 773 |
| MhlI | GDGCHC | 1 cut(s) | 672 |
| MluCI | AATT | 9 cut(s) | 25, 74, 336, 371, 500, 609, 614, 693, 795 |
| MlyI | GAGTC | 1 cut(s) | 552 |
| MmeI | TCCRAC | 2 cut(s) | 325, 488 |
| Mph1103I | ATGCAT | 1 cut(s) | 64 |
| MseI | TTAA | 3 cut(s) | 377, 716, 750 |
| MspA1I | CMGCKG | 1 cut(s) | 191 |
| MspI | CCGG | 2 cut(s) | 42, 326 |
| Mva1269I | GAATGC | 1 cut(s) | 691 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 487, 496, 518, 595 |
| NdeII | GATC | 4 cut(s) | 575, 676, 773, 917 |
| NlaIII | CATG | 2 cut(s) | 66, 127 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NsiI | ATGCAT | 1 cut(s) | 64 |
| NspI | RCATGY | 2 cut(s) | 66, 127 |
| PaeI | GCATGC | 1 cut(s) | 127 |
| PaeR7I | CTCGAG | 1 cut(s) | 911 |
| PaqCI | CACCTGC | 1 cut(s) | 698 |
| PctI | GAATGC | 1 cut(s) | 691 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 953 |
| PkrI | GCNGC | 6 cut(s) | 253, 445, 520, 538, 633, 658 |
| PleI | GAGTC | 1 cut(s) | 552 |
| PpsI | GAGTC | 1 cut(s) | 552 |
| Ppu21I | YACGTR | 1 cut(s) | 155 |
| PpuMI | RGGWCCY | 2 cut(s) | 5, 833 |
| PsiI | TTATAA | 1 cut(s) | 648 |
| Psp124BI | GAGCTC | 1 cut(s) | 672 |
| Psp5II | RGGWCCY | 2 cut(s) | 5, 833 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 3 cut(s) | 5, 833, 860 |
| PspPPI | RGGWCCY | 2 cut(s) | 5, 833 |
| PsuI | RGATCY | 1 cut(s) | 773 |
| PvuII | CAGCTG | 1 cut(s) | 191 |
| RsaI | GTAC | 4 cut(s) | 157, 187, 768, 788 |
| RsaNI | GTAC | 4 cut(s) | 156, 186, 767, 787 |
| SacI | GAGCTC | 1 cut(s) | 672 |
| SaqAI | TTAA | 3 cut(s) | 377, 716, 750 |
| SatI | GCNGC | 6 cut(s) | 252, 444, 519, 537, 632, 657 |
| Sau3AI | GATC | 4 cut(s) | 575, 676, 773, 917 |
| Sau96I | GGNCC | 3 cut(s) | 5, 833, 860 |
| SchI | GAGTC | 1 cut(s) | 552 |
| SduI | GDGCHC | 1 cut(s) | 672 |
| SfaNI | GCATC | 4 cut(s) | 49, 122, 477, 595 |
| Sfr274I | CTCGAG | 1 cut(s) | 911 |
| SinI | GGWCC | 3 cut(s) | 5, 833, 860 |
| SlaI | CTCGAG | 1 cut(s) | 911 |
| SmlI | CTYRAG | 1 cut(s) | 911 |
| SmoI | CTYRAG | 1 cut(s) | 911 |
| SnaBI | TACGTA | 1 cut(s) | 155 |
| SphI | GCATGC | 1 cut(s) | 127 |
| Sse9I | AATT | 9 cut(s) | 25, 74, 336, 371, 500, 609, 614, 693, 795 |
| SsiI | CCGC | 7 cut(s) | 100, 422, 510, 566, 656, 840, 888 |
| SstI | GAGCTC | 1 cut(s) | 672 |
| TaaI | ACNGT | 3 cut(s) | 806, 868, 952 |
| TaiI | ACGT | 1 cut(s) | 157 |
| TaqI | TCGA | 1 cut(s) | 912 |
| TasI | AATT | 9 cut(s) | 25, 74, 336, 371, 500, 609, 614, 693, 795 |
| TatI | WGTACW | 1 cut(s) | 786 |
| TauI | GCSGC | 1 cut(s) | 659 |
| Tru1I | TTAA | 3 cut(s) | 377, 716, 750 |
| Tru9I | TTAA | 3 cut(s) | 377, 716, 750 |
| TscAI | CASTG | 1 cut(s) | 873 |
| TseI | GCWGC | 5 cut(s) | 251, 443, 518, 536, 631 |
| TspDTI | ATGAA | 2 cut(s) | 42, 369 |
| TspGWI | ACGGA | 2 cut(s) | 482, 588 |
| TspRI | CASTG | 1 cut(s) | 873 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 953 |
| VpaK11BI | GGWCC | 3 cut(s) | 5, 833, 860 |
| XapI | RAATTY | 1 cut(s) | 74 |
| XceI | RCATGY | 2 cut(s) | 66, 127 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 870 |
| XhoI | CTCGAG | 1 cut(s) | 911 |
| Zsp2I | ATGCAT | 1 cut(s) | 64 |