ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 646 |
| AccI | GTMKAC | 1 cut(s) | 692 |
| AciI | CCGC | 3 cut(s) | 14, 65, 557 |
| AclWI | GGATC | 1 cut(s) | 941 |
| AcsI | RAATTY | 2 cut(s) | 707, 869 |
| AcuI | CTGAAG | 1 cut(s) | 390 |
| AfeI | AGCGCT | 1 cut(s) | 722 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 646, 796 |
| AgsI | TTSAA | 4 cut(s) | 221, 568, 749, 1029 |
| AluBI | AGCT | 3 cut(s) | 52, 353, 437 |
| AluI | AGCT | 3 cut(s) | 52, 353, 437 |
| Alw21I | GWGCWC | 2 cut(s) | 93, 439 |
| Alw26I | GTCTC | 5 cut(s) | 30, 61, 79, 585, 850 |
| AlwI | GGATC | 1 cut(s) | 941 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 274 |
| Ama87I | CYCGRG | 1 cut(s) | 342 |
| Aor51HI | AGCGCT | 1 cut(s) | 722 |
| AoxI | GGCC | 3 cut(s) | 66, 346, 913 |
| ApeKI | GCWGC | 1 cut(s) | 614 |
| ApoI | RAATTY | 2 cut(s) | 707, 869 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 659, 691 |
| AspLEI | GCGC | 2 cut(s) | 453, 723 |
| AspS9I | GGNCC | 3 cut(s) | 346, 365, 504 |
| AsuNHI | GCTAGC | 1 cut(s) | 5 |
| AvaI | CYCGRG | 1 cut(s) | 342 |
| AvaII | GGWCC | 2 cut(s) | 365, 504 |
| BaeGI | GKGCMC | 1 cut(s) | 205 |
| BanII | GRGCYC | 1 cut(s) | 439 |
| BauI | CACGAG | 1 cut(s) | 609 |
| Bbv12I | GWGCWC | 2 cut(s) | 93, 439 |
| BbvI | GCAGC | 1 cut(s) | 601 |
| BccI | CCATC | 3 cut(s) | 293, 505, 593 |
| BceAI | ACGGC | 1 cut(s) | 115 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 139, 173 |
| BclI | TGATCA | 2 cut(s) | 805, 982 |
| BcoDI | GTCTC | 5 cut(s) | 30, 61, 79, 585, 850 |
| BfaI | CTAG | 4 cut(s) | 6, 260, 350, 521 |
| BfoI | RGCGCY | 2 cut(s) | 454, 724 |
| BisI | GCNGC | 2 cut(s) | 66, 615 |
| BlsI | GCNGC | 2 cut(s) | 67, 616 |
| Bme18I | GGWCC | 2 cut(s) | 365, 504 |
| BmeT110I | CYCGRG | 1 cut(s) | 342 |
| BmgT120I | GGNCC | 3 cut(s) | 346, 365, 504 |
| BmiI | GGNNCC | 2 cut(s) | 347, 366 |
| BmsI | GCATC | 3 cut(s) | 674, 1009, 1119 |
| BmtI | GCTAGC | 1 cut(s) | 9 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 41, 73 |
| BsaBI | GATNNNNATC | 2 cut(s) | 762, 810 |
| BsaI | GGTCTC | 1 cut(s) | 79 |
| BsaJI | CCNNGG | 3 cut(s) | 69, 545, 795 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 8, 38, 775, 805 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 646, 796 |
| Bse1I | ACTGG | 1 cut(s) | 295 |
| Bse3DI | GCAATG | 3 cut(s) | 9, 60, 630 |
| Bse8I | GATNNNNATC | 2 cut(s) | 762, 810 |
| BseDI | CCNNGG | 3 cut(s) | 69, 545, 795 |
| BseGI | GGATG | 4 cut(s) | 153, 689, 1018, 1132 |
| BseJI | GATNNNNATC | 2 cut(s) | 762, 810 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 646, 796 |
| BseMI | GCAATG | 3 cut(s) | 9, 60, 630 |
| BseMII | CTCAG | 3 cut(s) | 264, 281, 865 |
| BseNI | ACTGG | 1 cut(s) | 295 |
| BseSI | GKGCMC | 1 cut(s) | 205 |
| BseXI | GCAGC | 1 cut(s) | 601 |
| BshFI | GGCC | 3 cut(s) | 68, 348, 915 |
| BsiHKAI | GWGCWC | 2 cut(s) | 93, 439 |
| BsiHKCI | CYCGRG | 1 cut(s) | 342 |
| BslFI | GGGAC | 1 cut(s) | 575 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 646, 796 |
| BsmAI | GTCTC | 5 cut(s) | 30, 61, 79, 585, 850 |
| BsmFI | GGGAC | 1 cut(s) | 575 |
| BsmI | GAATGC | 1 cut(s) | 1078 |
| BsnI | GGCC | 3 cut(s) | 68, 348, 915 |
| Bso31I | GGTCTC | 1 cut(s) | 79 |
| BsoBI | CYCGRG | 1 cut(s) | 342 |
| Bsp1286I | GDGCHC | 3 cut(s) | 93, 205, 439 |
| Bsp143I | GATC | 7 cut(s) | 97, 135, 240, 727, 805, 946, 982 |
| BspACI | CCGC | 3 cut(s) | 14, 65, 557 |
| BspANI | GGCC | 3 cut(s) | 68, 348, 915 |
| BspCNI | CTCAG | 3 cut(s) | 263, 280, 864 |
| BspHI | TCATGA | 2 cut(s) | 711, 1068 |
| BspLI | GGNNCC | 2 cut(s) | 347, 366 |
| BspOI | GCTAGC | 1 cut(s) | 9 |
| BspPI | GGATC | 1 cut(s) | 941 |
| BspQI | GCTCTTC | 1 cut(s) | 360 |
| BspTNI | GGTCTC | 1 cut(s) | 79 |
| BsrDI | GCAATG | 3 cut(s) | 9, 60, 630 |
| BsrI | ACTGG | 1 cut(s) | 295 |
| BssECI | CCNNGG | 3 cut(s) | 69, 545, 795 |
| BssMI | GATC | 7 cut(s) | 97, 135, 240, 727, 805, 946, 982 |
| BssNAI | GTATAC | 1 cut(s) | 693 |
| BssSI | CACGAG | 1 cut(s) | 609 |
| BssT1I | CCWWGG | 2 cut(s) | 69, 545 |
| Bst1107I | GTATAC | 1 cut(s) | 693 |
| Bst2BI | CACGAG | 1 cut(s) | 609 |
| Bst4CI | ACNGT | 2 cut(s) | 847, 1033 |
| Bst6I | CTCTTC | 1 cut(s) | 360 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstDEI | CTNAG | 4 cut(s) | 250, 267, 724, 851 |
| BstF5I | GGATG | 4 cut(s) | 153, 689, 1018, 1132 |
| BstH2I | RGCGCY | 2 cut(s) | 454, 724 |
| BstHHI | GCGC | 2 cut(s) | 453, 723 |
| BstKTI | GATC | 7 cut(s) | 100, 138, 243, 730, 808, 949, 985 |
| BstMAI | GTCTC | 5 cut(s) | 30, 61, 79, 585, 850 |
| BstMBI | GATC | 7 cut(s) | 97, 135, 240, 727, 805, 946, 982 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 620 |
| BstNSI | RCATGY | 3 cut(s) | 380, 863, 970 |
| BstSLI | GKGCMC | 1 cut(s) | 205 |
| BstV1I | GCAGC | 1 cut(s) | 601 |
| BstZ17I | GTATAC | 1 cut(s) | 693 |
| BsuRI | GGCC | 3 cut(s) | 68, 348, 915 |
| BtsCI | GGATG | 4 cut(s) | 153, 689, 1018, 1132 |
| BtsIMutI | CAGTG | 1 cut(s) | 288 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CaiI | CAGNNNCTG | 1 cut(s) | 274 |
| CciI | TCATGA | 2 cut(s) | 711, 1068 |
| CfoI | GCGC | 2 cut(s) | 453, 723 |
| Cfr13I | GGNCC | 3 cut(s) | 346, 365, 504 |
| CseI | GACGC | 1 cut(s) | 465 |
| DdeI | CTNAG | 4 cut(s) | 250, 267, 724, 851 |
| DpnI | GATC | 7 cut(s) | 99, 137, 242, 729, 807, 948, 984 |
| DpnII | GATC | 7 cut(s) | 97, 135, 240, 727, 805, 946, 982 |
| Eam1104I | CTCTTC | 1 cut(s) | 360 |
| EarI | CTCTTC | 1 cut(s) | 360 |
| Ecl136II | GAGCTC | 1 cut(s) | 437 |
| Eco130I | CCWWGG | 2 cut(s) | 69, 545 |
| Eco147I | AGGCCT | 1 cut(s) | 915 |
| Eco24I | GRGCYC | 1 cut(s) | 439 |
| Eco31I | GGTCTC | 1 cut(s) | 79 |
| Eco47I | GGWCC | 2 cut(s) | 365, 504 |
| Eco47III | AGCGCT | 1 cut(s) | 722 |
| Eco53kI | GAGCTC | 1 cut(s) | 437 |
| Eco57I | CTGAAG | 1 cut(s) | 390 |
| Eco88I | CYCGRG | 1 cut(s) | 342 |
| EcoICRI | GAGCTC | 1 cut(s) | 437 |
| EcoO109I | RGGNCCY | 2 cut(s) | 346, 365 |
| EcoT14I | CCWWGG | 2 cut(s) | 69, 545 |
| EcoT22I | ATGCAT | 1 cut(s) | 1134 |
| EcoT38I | GRGCYC | 1 cut(s) | 439 |
| ErhI | CCWWGG | 2 cut(s) | 69, 545 |
| FaqI | GGGAC | 1 cut(s) | 575 |
| FauI | CCCGC | 1 cut(s) | 550 |
| FbaI | TGATCA | 2 cut(s) | 805, 982 |
| FblI | GTMKAC | 1 cut(s) | 692 |
| Fnu4HI | GCNGC | 2 cut(s) | 66, 615 |
| FokI | GGATG | 4 cut(s) | 140, 696, 1025, 1119 |
| FriOI | GRGCYC | 1 cut(s) | 439 |
| Fsp4HI | GCNGC | 2 cut(s) | 66, 615 |
| FspBI | CTAG | 4 cut(s) | 6, 260, 350, 521 |
| GlaI | GCGC | 2 cut(s) | 452, 722 |
| GluI | GCNGC | 2 cut(s) | 66, 615 |
| HaeII | RGCGCY | 2 cut(s) | 454, 724 |
| HaeIII | GGCC | 3 cut(s) | 68, 348, 915 |
| HgaI | GACGC | 1 cut(s) | 465 |
| HhaI | GCGC | 2 cut(s) | 453, 723 |
| Hin6I | GCGC | 2 cut(s) | 451, 721 |
| HinP1I | GCGC | 2 cut(s) | 451, 721 |
| HinfI | GANTC | 4 cut(s) | 17, 23, 338, 800 |
| Hpy166II | GTNNAC | 1 cut(s) | 693 |
| Hpy188I | TCNGA | 9 cut(s) | 22, 253, 270, 598, 799, 805, 987, 1099, 1128 |
| Hpy188III | TCNNGA | 6 cut(s) | 188, 368, 712, 853, 874, 1069 |
| Hpy8I | GTNNAC | 1 cut(s) | 693 |
| Hpy99I | CGWCG | 1 cut(s) | 136 |
| HpyAV | CCTTC | 5 cut(s) | 827, 871, 998, 1048, 1075 |
| HpyCH4III | ACNGT | 2 cut(s) | 847, 1033 |
| HpyCH4IV | ACGT | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 8 cut(s) | 115, 376, 617, 623, 687, 863, 998, 1132 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 620 |
| HpyF3I | CTNAG | 4 cut(s) | 250, 267, 724, 851 |
| HpySE526I | ACGT | 1 cut(s) | 229 |
| HspAI | GCGC | 2 cut(s) | 451, 721 |
| Ksp22I | TGATCA | 2 cut(s) | 805, 982 |
| Kzo9I | GATC | 7 cut(s) | 97, 135, 240, 727, 805, 946, 982 |
| LguI | GCTCTTC | 1 cut(s) | 360 |
| LmnI | GCTCC | 2 cut(s) | 434, 442 |
| LpnPI | CCDG | 9 cut(s) | 60, 131, 276, 346, 381, 453, 642, 838, 859 |
| Lsp1109I | GCAGC | 1 cut(s) | 601 |
| LweI | GCATC | 3 cut(s) | 674, 1009, 1119 |
| MaeI | CTAG | 4 cut(s) | 6, 260, 350, 521 |
| MaeII | ACGT | 1 cut(s) | 229 |
| MaeIII | GTNAC | 2 cut(s) | 899, 1057 |
| MalI | GATC | 7 cut(s) | 99, 137, 242, 729, 807, 948, 984 |
| MboI | GATC | 7 cut(s) | 97, 135, 240, 727, 805, 946, 982 |
| MboII | GAAGA | 4 cut(s) | 347, 384, 387, 1115 |
| MfeI | CAATTG | 1 cut(s) | 236 |
| MhlI | GDGCHC | 3 cut(s) | 93, 205, 439 |
| MluCI | AATT | 4 cut(s) | 166, 236, 707, 869 |
| MlyI | GAGTC | 3 cut(s) | 26, 32, 794 |
| MmeI | TCCRAC | 2 cut(s) | 289, 909 |
| MnlI | CCTC | 9 cut(s) | 118, 167, 167, 243, 274, 454, 618, 801, 805 |
| Mph1103I | ATGCAT | 1 cut(s) | 1134 |
| MseI | TTAA | 3 cut(s) | 183, 909, 918 |
| MslI | CAYNNNNRTG | 2 cut(s) | 411, 1049 |
| MunI | CAATTG | 1 cut(s) | 236 |
| Mva1269I | GAATGC | 1 cut(s) | 1078 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 620 |
| NdeII | GATC | 7 cut(s) | 97, 135, 240, 727, 805, 946, 982 |
| NheI | GCTAGC | 1 cut(s) | 5 |
| NlaIV | GGNNCC | 2 cut(s) | 347, 366 |
| NmeAIII | GCCGAG | 1 cut(s) | 72 |
| NsiI | ATGCAT | 1 cut(s) | 1134 |
| NspI | RCATGY | 3 cut(s) | 380, 863, 970 |
| PagI | TCATGA | 2 cut(s) | 711, 1068 |
| PceI | AGGCCT | 1 cut(s) | 915 |
| PciSI | GCTCTTC | 1 cut(s) | 360 |
| PctI | GAATGC | 1 cut(s) | 1078 |
| PfeI | GAWTC | 1 cut(s) | 338 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 646 |
| PkrI | GCNGC | 2 cut(s) | 67, 616 |
| PleI | GAGTC | 3 cut(s) | 25, 31, 794 |
| PpsI | GAGTC | 3 cut(s) | 25, 31, 794 |
| PpuMI | RGGWCCY | 1 cut(s) | 365 |
| Psp124BI | GAGCTC | 1 cut(s) | 439 |
| Psp5II | RGGWCCY | 1 cut(s) | 365 |
| PspN4I | GGNNCC | 2 cut(s) | 347, 366 |
| PspPI | GGNCC | 3 cut(s) | 346, 365, 504 |
| PspPPI | RGGWCCY | 1 cut(s) | 365 |
| PstNI | CAGNNNCTG | 1 cut(s) | 274 |
| RseI | CAYNNNNRTG | 2 cut(s) | 411, 1049 |
| SacI | GAGCTC | 1 cut(s) | 439 |
| SapI | GCTCTTC | 1 cut(s) | 360 |
| SaqAI | TTAA | 3 cut(s) | 183, 909, 918 |
| SatI | GCNGC | 2 cut(s) | 66, 615 |
| Sau3AI | GATC | 7 cut(s) | 97, 135, 240, 727, 805, 946, 982 |
| Sau96I | GGNCC | 3 cut(s) | 346, 365, 504 |
| SchI | GAGTC | 3 cut(s) | 26, 32, 794 |
| SduI | GDGCHC | 3 cut(s) | 93, 205, 439 |
| SetI | ASST | 7 cut(s) | 34, 54, 232, 355, 439, 1059, 1083 |
| SfaNI | GCATC | 3 cut(s) | 674, 1009, 1119 |
| SinI | GGWCC | 2 cut(s) | 365, 504 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 411, 1049 |
| Sse9I | AATT | 4 cut(s) | 166, 236, 707, 869 |
| SseBI | AGGCCT | 1 cut(s) | 915 |
| SsiI | CCGC | 3 cut(s) | 14, 65, 557 |
| SspMI | CTAG | 4 cut(s) | 6, 260, 350, 521 |
| SstI | GAGCTC | 1 cut(s) | 439 |
| StuI | AGGCCT | 1 cut(s) | 915 |
| StyI | CCWWGG | 2 cut(s) | 69, 545 |
| TaaI | ACNGT | 2 cut(s) | 847, 1033 |
| TaiI | ACGT | 1 cut(s) | 232 |
| TaqI | TCGA | 3 cut(s) | 134, 172, 825 |
| TasI | AATT | 4 cut(s) | 166, 236, 707, 869 |
| TauI | GCSGC | 1 cut(s) | 68 |
| TfiI | GAWTC | 1 cut(s) | 338 |
| Tru1I | TTAA | 3 cut(s) | 183, 909, 918 |
| Tru9I | TTAA | 3 cut(s) | 183, 909, 918 |
| TscAI | CASTG | 1 cut(s) | 295 |
| TseI | GCWGC | 1 cut(s) | 614 |
| TspDTI | ATGAA | 9 cut(s) | 585, 641, 700, 728, 1017, 1057, 1067, 1085, 1116 |
| TspGWI | ACGGA | 2 cut(s) | 100, 880 |
| TspRI | CASTG | 1 cut(s) | 295 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 646 |
| VpaK11BI | GGWCC | 2 cut(s) | 365, 504 |
| XapI | RAATTY | 2 cut(s) | 707, 869 |
| XceI | RCATGY | 3 cut(s) | 380, 863, 970 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 67 |
| XmiI | GTMKAC | 1 cut(s) | 692 |
| XspI | CTAG | 4 cut(s) | 6, 260, 350, 521 |
| Zsp2I | ATGCAT | 1 cut(s) | 1134 |