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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 141 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 71 |
| AciI | CCGC | 2 cut(s) | 225, 767 |
| AclWI | GGATC | 2 cut(s) | 115, 552 |
| AcsI | RAATTY | 2 cut(s) | 322, 376 |
| AcuI | CTGAAG | 1 cut(s) | 595 |
| AcvI | CACGTG | 1 cut(s) | 797 |
| AdeI | CACNNNGTG | 1 cut(s) | 797 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 71, 370, 645, 746 |
| AflII | CTTAAG | 1 cut(s) | 595 |
| AflIII | ACRYGT | 1 cut(s) | 796 |
| AgsI | TTSAA | 2 cut(s) | 25, 530 |
| AluBI | AGCT | 2 cut(s) | 115, 127 |
| AluI | AGCT | 2 cut(s) | 115, 127 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| Alw26I | GTCTC | 1 cut(s) | 637 |
| Alw44I | GTGCAC | 1 cut(s) | 233 |
| AlwI | GGATC | 2 cut(s) | 115, 552 |
| AoxI | GGCC | 1 cut(s) | 5 |
| ApaLI | GTGCAC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 1 cut(s) | 689 |
| ApoI | RAATTY | 2 cut(s) | 322, 376 |
| AspA2I | CCTAGG | 1 cut(s) | 574 |
| AsuC2I | CCSGG | 1 cut(s) | 426 |
| AsuHPI | GGTGA | 5 cut(s) | 169, 260, 385, 590, 761 |
| AvrII | CCTAGG | 1 cut(s) | 574 |
| BaeGI | GKGCMC | 1 cut(s) | 237 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 709, 742 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 550, 582 |
| BauI | CACGAG | 1 cut(s) | 643 |
| BbrPI | CACGTG | 1 cut(s) | 797 |
| BbsI | GAAGAC | 1 cut(s) | 344 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BbvI | GCAGC | 1 cut(s) | 701 |
| BccI | CCATC | 1 cut(s) | 240 |
| BclI | TGATCA | 1 cut(s) | 252 |
| BcnI | CCSGG | 1 cut(s) | 426 |
| BcoDI | GTCTC | 1 cut(s) | 637 |
| BfaI | CTAG | 2 cut(s) | 575, 698 |
| BfrI | CTTAAG | 1 cut(s) | 595 |
| BfuAI | ACCTGC | 1 cut(s) | 141 |
| BisI | GCNGC | 2 cut(s) | 226, 690 |
| BlnI | CCTAGG | 1 cut(s) | 574 |
| BlsI | GCNGC | 2 cut(s) | 227, 691 |
| Bme1390I | CCNGG | 1 cut(s) | 426 |
| BmrFI | CCNGG | 1 cut(s) | 426 |
| BmsI | GCATC | 2 cut(s) | 70, 429 |
| BpiI | GAAGAC | 1 cut(s) | 344 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 125, 157 |
| BpuMI | CCSGG | 1 cut(s) | 426 |
| BsaAI | YACGTR | 1 cut(s) | 797 |
| BsaJI | CCNNGG | 3 cut(s) | 70, 193, 574 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 71, 83, 101, 113 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 71, 370, 645, 746 |
| Bse118I | RCCGGY | 1 cut(s) | 179 |
| Bse1I | ACTGG | 1 cut(s) | 53 |
| Bse3DI | GCAATG | 1 cut(s) | 56 |
| BseDI | CCNNGG | 3 cut(s) | 70, 193, 574 |
| BseGI | GGATG | 3 cut(s) | 61, 444, 602 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 71, 370, 645, 746 |
| BseMI | GCAATG | 1 cut(s) | 56 |
| BseNI | ACTGG | 1 cut(s) | 53 |
| BseRI | GAGGAG | 2 cut(s) | 625, 628 |
| BseSI | GKGCMC | 1 cut(s) | 237 |
| BseXI | GCAGC | 1 cut(s) | 701 |
| BsgI | GTGCAG | 1 cut(s) | 453 |
| BshFI | GGCC | 1 cut(s) | 7 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| BsiSI | CCGG | 2 cut(s) | 180, 426 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 71, 370, 645, 746 |
| BsmAI | GTCTC | 1 cut(s) | 637 |
| BsmI | GAATGC | 1 cut(s) | 205 |
| BsnI | GGCC | 1 cut(s) | 7 |
| Bsp1286I | GDGCHC | 1 cut(s) | 237 |
| Bsp143I | GATC | 3 cut(s) | 107, 252, 544 |
| Bsp19I | CCATGG | 1 cut(s) | 193 |
| BspACI | CCGC | 2 cut(s) | 225, 767 |
| BspANI | GGCC | 1 cut(s) | 7 |
| BspMI | ACCTGC | 1 cut(s) | 141 |
| BspPI | GGATC | 2 cut(s) | 115, 552 |
| BspTI | CTTAAG | 1 cut(s) | 595 |
| BsrDI | GCAATG | 1 cut(s) | 56 |
| BsrFI | RCCGGY | 1 cut(s) | 179 |
| BsrI | ACTGG | 1 cut(s) | 53 |
| BssAI | RCCGGY | 1 cut(s) | 179 |
| BssECI | CCNNGG | 3 cut(s) | 70, 193, 574 |
| BssMI | GATC | 3 cut(s) | 107, 252, 544 |
| BssSI | CACGAG | 1 cut(s) | 643 |
| BssT1I | CCWWGG | 3 cut(s) | 70, 193, 574 |
| Bst2BI | CACGAG | 1 cut(s) | 643 |
| Bst4CI | ACNGT | 1 cut(s) | 242 |
| BstAFI | CTTAAG | 1 cut(s) | 595 |
| BstBAI | YACGTR | 1 cut(s) | 797 |
| BstC8I | GCNNGC | 2 cut(s) | 669, 769 |
| BstDEI | CTNAG | 1 cut(s) | 214 |
| BstDSI | CCRYGG | 1 cut(s) | 193 |
| BstEII | GGTNACC | 1 cut(s) | 565 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 643 |
| BstF5I | GGATG | 3 cut(s) | 61, 444, 602 |
| BstKTI | GATC | 3 cut(s) | 110, 255, 547 |
| BstMAI | GTCTC | 1 cut(s) | 637 |
| BstMBI | GATC | 3 cut(s) | 107, 252, 544 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 133, 655, 664, 673, 698, 777 |
| BstPI | GGTNACC | 1 cut(s) | 565 |
| BstSCI | CCNGG | 1 cut(s) | 424 |
| BstSLI | GKGCMC | 1 cut(s) | 237 |
| BstV1I | GCAGC | 1 cut(s) | 701 |
| BstV2I | GAAGAC | 1 cut(s) | 344 |
| BstX2I | RGATCY | 1 cut(s) | 544 |
| BstYI | RGATCY | 1 cut(s) | 544 |
| BsuRI | GGCC | 1 cut(s) | 7 |
| BtgI | CCRYGG | 1 cut(s) | 193 |
| BtsCI | GGATG | 3 cut(s) | 61, 444, 602 |
| BveI | ACCTGC | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 2 cut(s) | 669, 769 |
| Cfr10I | RCCGGY | 1 cut(s) | 179 |
| CseI | GACGC | 1 cut(s) | 728 |
| CviAII | CATG | 3 cut(s) | 194, 540, 825 |
| DdeI | CTNAG | 1 cut(s) | 214 |
| DpnI | GATC | 3 cut(s) | 109, 254, 546 |
| DpnII | GATC | 3 cut(s) | 107, 252, 544 |
| DraIII | CACNNNGTG | 1 cut(s) | 797 |
| Eco130I | CCWWGG | 3 cut(s) | 70, 193, 574 |
| Eco57I | CTGAAG | 1 cut(s) | 595 |
| Eco72I | CACGTG | 1 cut(s) | 797 |
| Eco91I | GGTNACC | 1 cut(s) | 565 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 643 |
| EcoO65I | GGTNACC | 1 cut(s) | 565 |
| EcoRI | GAATTC | 2 cut(s) | 322, 376 |
| EcoT14I | CCWWGG | 3 cut(s) | 70, 193, 574 |
| ErhI | CCWWGG | 3 cut(s) | 70, 193, 574 |
| FaeI | CATG | 3 cut(s) | 197, 543, 828 |
| FatI | CATG | 3 cut(s) | 193, 539, 824 |
| FauI | CCCGC | 1 cut(s) | 760 |
| FbaI | TGATCA | 1 cut(s) | 252 |
| Fnu4HI | GCNGC | 2 cut(s) | 226, 690 |
| FokI | GGATG | 3 cut(s) | 48, 451, 589 |
| Fsp4HI | GCNGC | 2 cut(s) | 226, 690 |
| FspBI | CTAG | 2 cut(s) | 575, 698 |
| GluI | GCNGC | 2 cut(s) | 226, 690 |
| HaeIII | GGCC | 1 cut(s) | 7 |
| HapII | CCGG | 2 cut(s) | 180, 426 |
| HgaI | GACGC | 1 cut(s) | 728 |
| Hin1II | CATG | 3 cut(s) | 197, 543, 828 |
| HincII | GTYRAC | 3 cut(s) | 79, 200, 718 |
| HindII | GTYRAC | 3 cut(s) | 79, 200, 718 |
| HindIII | AAGCTT | 1 cut(s) | 125 |
| HinfI | GANTC | 6 cut(s) | 52, 98, 138, 310, 497, 581 |
| HpaII | CCGG | 2 cut(s) | 180, 426 |
| HphI | GGTGA | 5 cut(s) | 169, 260, 385, 590, 761 |
| Hpy166II | GTNNAC | 5 cut(s) | 79, 200, 235, 718, 752 |
| Hpy188I | TCNGA | 1 cut(s) | 335 |
| Hpy188III | TCNNGA | 1 cut(s) | 555 |
| Hpy8I | GTNNAC | 5 cut(s) | 79, 200, 235, 718, 752 |
| HpyAV | CCTTC | 3 cut(s) | 281, 546, 619 |
| HpyCH4III | ACNGT | 1 cut(s) | 242 |
| HpyCH4IV | ACGT | 1 cut(s) | 796 |
| HpyCH4V | TGCA | 9 cut(s) | 38, 45, 61, 150, 205, 235, 434, 442, 824 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 133, 655, 664, 673, 698, 777 |
| HpyF3I | CTNAG | 1 cut(s) | 214 |
| HpySE526I | ACGT | 1 cut(s) | 796 |
| Hsp92II | CATG | 3 cut(s) | 197, 543, 828 |
| Ksp22I | TGATCA | 1 cut(s) | 252 |
| Kzo9I | GATC | 3 cut(s) | 107, 252, 544 |
| LmnI | GCTCC | 1 cut(s) | 133 |
| Lsp1109I | GCAGC | 1 cut(s) | 701 |
| LweI | GCATC | 2 cut(s) | 70, 429 |
| MaeI | CTAG | 2 cut(s) | 575, 698 |
| MaeII | ACGT | 1 cut(s) | 796 |
| MaeIII | GTNAC | 4 cut(s) | 175, 498, 565, 578 |
| MalI | GATC | 3 cut(s) | 109, 254, 546 |
| MboI | GATC | 3 cut(s) | 107, 252, 544 |
| MboII | GAAGA | 2 cut(s) | 13, 344 |
| MflI | RGATCY | 1 cut(s) | 544 |
| MhlI | GDGCHC | 1 cut(s) | 237 |
| MluCI | AATT | 3 cut(s) | 322, 376, 693 |
| MlyI | GAGTC | 5 cut(s) | 46, 92, 319, 506, 575 |
| MmeI | TCCRAC | 2 cut(s) | 114, 126 |
| MseI | TTAA | 2 cut(s) | 473, 596 |
| MslI | CAYNNNNRTG | 1 cut(s) | 823 |
| MspCI | CTTAAG | 1 cut(s) | 595 |
| MspI | CCGG | 2 cut(s) | 180, 426 |
| MspR9I | CCNGG | 1 cut(s) | 426 |
| Mva1269I | GAATGC | 1 cut(s) | 205 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 133, 655, 664, 673, 698, 777 |
| NciI | CCSGG | 1 cut(s) | 426 |
| NcoI | CCATGG | 1 cut(s) | 193 |
| NdeII | GATC | 3 cut(s) | 107, 252, 544 |
| NlaIII | CATG | 3 cut(s) | 197, 543, 828 |
| NmuCI | GTSAC | 3 cut(s) | 175, 498, 578 |
| PctI | GAATGC | 1 cut(s) | 205 |
| PfeI | GAWTC | 1 cut(s) | 138 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 71 |
| PkrI | GCNGC | 2 cut(s) | 227, 691 |
| PleI | GAGTC | 5 cut(s) | 46, 92, 318, 505, 575 |
| PmaCI | CACGTG | 1 cut(s) | 797 |
| PmlI | CACGTG | 1 cut(s) | 797 |
| PpsI | GAGTC | 5 cut(s) | 46, 92, 318, 505, 575 |
| Ppu21I | YACGTR | 1 cut(s) | 797 |
| PspCI | CACGTG | 1 cut(s) | 797 |
| PspEI | GGTNACC | 1 cut(s) | 565 |
| PsuI | RGATCY | 1 cut(s) | 544 |
| RseI | CAYNNNNRTG | 1 cut(s) | 823 |
| SaqAI | TTAA | 2 cut(s) | 473, 596 |
| SatI | GCNGC | 2 cut(s) | 226, 690 |
| Sau3AI | GATC | 3 cut(s) | 107, 252, 544 |
| SchI | GAGTC | 5 cut(s) | 46, 92, 319, 506, 575 |
| ScrFI | CCNGG | 1 cut(s) | 426 |
| SduI | GDGCHC | 1 cut(s) | 237 |
| SfaNI | GCATC | 2 cut(s) | 70, 429 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 823 |
| SmlI | CTYRAG | 1 cut(s) | 595 |
| SmoI | CTYRAG | 1 cut(s) | 595 |
| Sse9I | AATT | 3 cut(s) | 322, 376, 693 |
| SsiI | CCGC | 2 cut(s) | 225, 767 |
| SspMI | CTAG | 2 cut(s) | 575, 698 |
| StyD4I | CCNGG | 1 cut(s) | 424 |
| StyI | CCWWGG | 3 cut(s) | 70, 193, 574 |
| TaaI | ACNGT | 1 cut(s) | 242 |
| TaiI | ACGT | 1 cut(s) | 799 |
| TaqI | TCGA | 3 cut(s) | 96, 110, 308 |
| TasI | AATT | 3 cut(s) | 322, 376, 693 |
| TauI | GCSGC | 1 cut(s) | 228 |
| TfiI | GAWTC | 1 cut(s) | 138 |
| Tru1I | TTAA | 2 cut(s) | 473, 596 |
| Tru9I | TTAA | 2 cut(s) | 473, 596 |
| TseFI | GTSAC | 3 cut(s) | 175, 498, 578 |
| TseI | GCWGC | 1 cut(s) | 689 |
| Tsp45I | GTSAC | 3 cut(s) | 175, 498, 578 |
| TspDTI | ATGAA | 1 cut(s) | 528 |
| TspGWI | ACGGA | 1 cut(s) | 120 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 71 |
| Vha464I | CTTAAG | 1 cut(s) | 595 |
| VneI | GTGCAC | 1 cut(s) | 233 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 643 |
| XapI | RAATTY | 2 cut(s) | 322, 376 |
| XmaJI | CCTAGG | 1 cut(s) | 574 |
| XspI | CTAG | 2 cut(s) | 575, 698 |