Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 6 - 190 | 7.9e-11 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 792 |
| AccB1I | GGYRCC | 1 cut(s) | 321 |
| AciI | CCGC | 5 cut(s) | 447, 689, 692, 715, 721 |
| AclWI | GGATC | 3 cut(s) | 360, 374, 867 |
| AcuI | CTGAAG | 1 cut(s) | 794 |
| AcvI | CACGTG | 1 cut(s) | 543 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 148, 332, 382, 475, 727, 886 |
| AflIII | ACRYGT | 1 cut(s) | 540 |
| AjnI | CCWGG | 2 cut(s) | 234, 429 |
| AluBI | AGCT | 4 cut(s) | 491, 524, 697, 913 |
| AluI | AGCT | 4 cut(s) | 491, 524, 697, 913 |
| Alw21I | GWGCWC | 1 cut(s) | 745 |
| Alw26I | GTCTC | 1 cut(s) | 352 |
| AlwI | GGATC | 3 cut(s) | 360, 374, 867 |
| AoxI | GGCC | 2 cut(s) | 372, 466 |
| ApeKI | GCWGC | 3 cut(s) | 127, 524, 694 |
| AspS9I | GGNCC | 2 cut(s) | 373, 427 |
| AsuC2I | CCSGG | 2 cut(s) | 326, 555 |
| AsuHPI | GGTGA | 5 cut(s) | 250, 286, 582, 640, 688 |
| AsuII | TTCGAA | 1 cut(s) | 457 |
| AvaII | GGWCC | 1 cut(s) | 427 |
| BaeGI | GKGCMC | 1 cut(s) | 324 |
| BanI | GGYRCC | 1 cut(s) | 321 |
| BbrPI | CACGTG | 1 cut(s) | 543 |
| BbsI | GAAGAC | 1 cut(s) | 519 |
| Bbv12I | GWGCWC | 1 cut(s) | 745 |
| BbvI | GCAGC | 3 cut(s) | 139, 511, 706 |
| BccI | CCATC | 2 cut(s) | 265, 699 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 626, 660 |
| BciT130I | CCWGG | 2 cut(s) | 236, 431 |
| BclI | TGATCA | 1 cut(s) | 652 |
| BcnI | CCSGG | 2 cut(s) | 326, 555 |
| BcoDI | GTCTC | 1 cut(s) | 352 |
| BfaI | CTAG | 3 cut(s) | 284, 621, 642 |
| BglII | AGATCT | 1 cut(s) | 420 |
| BisI | GCNGC | 5 cut(s) | 128, 525, 689, 692, 695 |
| BlsI | GCNGC | 5 cut(s) | 129, 526, 690, 693, 696 |
| Bme1390I | CCNGG | 4 cut(s) | 236, 326, 431, 555 |
| Bme18I | GGWCC | 1 cut(s) | 427 |
| BmgT120I | GGNCC | 2 cut(s) | 373, 427 |
| BmiI | GGNNCC | 3 cut(s) | 323, 719, 800 |
| BmrFI | CCNGG | 4 cut(s) | 236, 326, 431, 555 |
| BmsI | GCATC | 3 cut(s) | 256, 462, 567 |
| BpiI | GAAGAC | 1 cut(s) | 519 |
| BpmI | CTGGAG | 2 cut(s) | 692, 719 |
| Bpu14I | TTCGAA | 1 cut(s) | 457 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| BpuMI | CCSGG | 2 cut(s) | 326, 555 |
| BsaAI | YACGTR | 1 cut(s) | 543 |
| BsaJI | CCNNGG | 3 cut(s) | 25, 369, 430 |
| BsaWI | WCCGGW | 1 cut(s) | 382 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 148, 332, 382, 475, 727, 886 |
| Bse1I | ACTGG | 3 cut(s) | 313, 337, 844 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| BseBI | CCWGG | 2 cut(s) | 236, 431 |
| BseDI | CCNNGG | 3 cut(s) | 25, 369, 430 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 148, 332, 382, 475, 727, 886 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseNI | ACTGG | 3 cut(s) | 313, 337, 844 |
| BseRI | GAGGAG | 2 cut(s) | 846, 902 |
| BseSI | GKGCMC | 1 cut(s) | 324 |
| BseXI | GCAGC | 3 cut(s) | 139, 511, 706 |
| Bsh1285I | CGRYCG | 1 cut(s) | 451 |
| BshFI | GGCC | 2 cut(s) | 374, 468 |
| BshNI | GGYRCC | 1 cut(s) | 321 |
| BsiEI | CGRYCG | 1 cut(s) | 451 |
| BsiHKAI | GWGCWC | 1 cut(s) | 745 |
| BsiSI | CCGG | 4 cut(s) | 326, 383, 484, 555 |
| BslFI | GGGAC | 2 cut(s) | 168, 537 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 148, 332, 382, 475, 727, 886 |
| BsmAI | GTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 2 cut(s) | 168, 537 |
| BsnI | GGCC | 2 cut(s) | 374, 468 |
| Bsp119I | TTCGAA | 1 cut(s) | 457 |
| Bsp1286I | GDGCHC | 2 cut(s) | 324, 745 |
| Bsp143I | GATC | 7 cut(s) | 178, 225, 365, 379, 420, 652, 859 |
| BspACI | CCGC | 5 cut(s) | 447, 689, 692, 715, 721 |
| BspANI | GGCC | 2 cut(s) | 374, 468 |
| BspHI | TCATGA | 1 cut(s) | 745 |
| BspLI | GGNNCC | 3 cut(s) | 323, 719, 800 |
| BspPI | GGATC | 3 cut(s) | 360, 374, 867 |
| BspT104I | TTCGAA | 1 cut(s) | 457 |
| BspT107I | GGYRCC | 1 cut(s) | 321 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BsrI | ACTGG | 3 cut(s) | 313, 337, 844 |
| BssECI | CCNNGG | 3 cut(s) | 25, 369, 430 |
| BssMI | GATC | 7 cut(s) | 178, 225, 365, 379, 420, 652, 859 |
| BssT1I | CCWWGG | 2 cut(s) | 25, 369 |
| Bst2UI | CCWGG | 2 cut(s) | 236, 431 |
| BstBAI | YACGTR | 1 cut(s) | 543 |
| BstBI | TTCGAA | 1 cut(s) | 457 |
| BstC8I | GCNNGC | 3 cut(s) | 54, 477, 489 |
| BstDEI | CTNAG | 1 cut(s) | 101 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstKTI | GATC | 7 cut(s) | 181, 228, 368, 382, 423, 655, 862 |
| BstMAI | GTCTC | 1 cut(s) | 352 |
| BstMBI | GATC | 7 cut(s) | 178, 225, 365, 379, 420, 652, 859 |
| BstMCI | CGRYCG | 1 cut(s) | 451 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 555, 694 |
| BstNI | CCWGG | 2 cut(s) | 236, 431 |
| BstNSI | RCATGY | 1 cut(s) | 56 |
| BstSCI | CCNGG | 4 cut(s) | 234, 324, 429, 553 |
| BstSLI | GKGCMC | 1 cut(s) | 324 |
| BstV1I | GCAGC | 3 cut(s) | 139, 511, 706 |
| BstV2I | GAAGAC | 1 cut(s) | 519 |
| BstX2I | RGATCY | 1 cut(s) | 420 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 670 |
| BstYI | RGATCY | 1 cut(s) | 420 |
| BsuRI | GGCC | 2 cut(s) | 374, 468 |
| BtgZI | GCGATG | 2 cut(s) | 151, 284 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| BtsIMutI | CAGTG | 1 cut(s) | 306 |
| Cac8I | GCNNGC | 3 cut(s) | 54, 477, 489 |
| CciI | TCATGA | 1 cut(s) | 745 |
| Cfr13I | GGNCC | 2 cut(s) | 373, 427 |
| CviAII | CATG | 6 cut(s) | 53, 344, 517, 597, 656, 746 |
| DdeI | CTNAG | 1 cut(s) | 101 |
| DpnI | GATC | 7 cut(s) | 180, 227, 367, 381, 422, 654, 861 |
| DpnII | GATC | 7 cut(s) | 178, 225, 365, 379, 420, 652, 859 |
| Eco130I | CCWWGG | 2 cut(s) | 25, 369 |
| Eco47I | GGWCC | 1 cut(s) | 427 |
| Eco57I | CTGAAG | 1 cut(s) | 794 |
| Eco72I | CACGTG | 1 cut(s) | 543 |
| EcoRII | CCWGG | 2 cut(s) | 234, 429 |
| EcoT14I | CCWWGG | 2 cut(s) | 25, 369 |
| ErhI | CCWWGG | 2 cut(s) | 25, 369 |
| FaeI | CATG | 6 cut(s) | 56, 347, 520, 600, 659, 749 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 74, 106 |
| FaqI | GGGAC | 2 cut(s) | 168, 537 |
| FatI | CATG | 6 cut(s) | 52, 343, 516, 596, 655, 745 |
| FbaI | TGATCA | 1 cut(s) | 652 |
| Fnu4HI | GCNGC | 5 cut(s) | 128, 525, 689, 692, 695 |
| FokI | GGATG | 1 cut(s) | 230 |
| Fsp4HI | GCNGC | 5 cut(s) | 128, 525, 689, 692, 695 |
| FspBI | CTAG | 3 cut(s) | 284, 621, 642 |
| GluI | GCNGC | 5 cut(s) | 128, 525, 689, 692, 695 |
| GsuI | CTGGAG | 2 cut(s) | 692, 719 |
| HaeIII | GGCC | 2 cut(s) | 374, 468 |
| HapII | CCGG | 4 cut(s) | 326, 383, 484, 555 |
| Hin1II | CATG | 6 cut(s) | 56, 347, 520, 600, 659, 749 |
| HincII | GTYRAC | 2 cut(s) | 338, 852 |
| HindII | GTYRAC | 2 cut(s) | 338, 852 |
| HindIII | AAGCTT | 1 cut(s) | 489 |
| HinfI | GANTC | 5 cut(s) | 70, 156, 221, 679, 785 |
| HpaII | CCGG | 4 cut(s) | 326, 383, 484, 555 |
| HphI | GGTGA | 5 cut(s) | 250, 286, 582, 640, 688 |
| Hpy166II | GTNNAC | 6 cut(s) | 37, 250, 338, 590, 631, 852 |
| Hpy188I | TCNGA | 5 cut(s) | 75, 499, 652, 822, 875 |
| Hpy188III | TCNNGA | 3 cut(s) | 671, 683, 746 |
| Hpy8I | GTNNAC | 6 cut(s) | 37, 250, 338, 590, 631, 852 |
| HpyAV | CCTTC | 5 cut(s) | 152, 705, 743, 757, 876 |
| HpyCH4IV | ACGT | 2 cut(s) | 291, 542 |
| HpyCH4V | TGCA | 3 cut(s) | 117, 475, 637 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 555, 694 |
| HpyF3I | CTNAG | 1 cut(s) | 101 |
| HpySE526I | ACGT | 2 cut(s) | 291, 542 |
| Hsp92II | CATG | 6 cut(s) | 56, 347, 520, 600, 659, 749 |
| Ksp22I | TGATCA | 1 cut(s) | 652 |
| Kzo9I | GATC | 7 cut(s) | 178, 225, 365, 379, 420, 652, 859 |
| LmnI | GCTCC | 2 cut(s) | 521, 546 |
| Lsp1109I | GCAGC | 3 cut(s) | 139, 511, 706 |
| LweI | GCATC | 3 cut(s) | 256, 462, 567 |
| MaeI | CTAG | 3 cut(s) | 284, 621, 642 |
| MaeII | ACGT | 2 cut(s) | 291, 542 |
| MalI | GATC | 7 cut(s) | 180, 227, 367, 381, 422, 654, 861 |
| MboI | GATC | 7 cut(s) | 178, 225, 365, 379, 420, 652, 859 |
| MboII | GAAGA | 2 cut(s) | 524, 659 |
| MflI | RGATCY | 1 cut(s) | 420 |
| MhlI | GDGCHC | 2 cut(s) | 324, 745 |
| MluCI | AATT | 2 cut(s) | 4, 19 |
| MlyI | GAGTC | 3 cut(s) | 150, 688, 794 |
| MmeI | TCCRAC | 3 cut(s) | 385, 800, 817 |
| MseI | TTAA | 2 cut(s) | 414, 915 |
| MslI | CAYNNNNRTG | 2 cut(s) | 211, 595 |
| MspA1I | CMGCKG | 1 cut(s) | 697 |
| MspI | CCGG | 4 cut(s) | 326, 383, 484, 555 |
| MspR9I | CCNGG | 4 cut(s) | 236, 326, 431, 555 |
| MvaI | CCWGG | 2 cut(s) | 236, 431 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 555, 694 |
| NciI | CCSGG | 2 cut(s) | 326, 555 |
| NdeII | GATC | 7 cut(s) | 178, 225, 365, 379, 420, 652, 859 |
| NlaIII | CATG | 6 cut(s) | 56, 347, 520, 600, 659, 749 |
| NlaIV | GGNNCC | 3 cut(s) | 323, 719, 800 |
| NmeAIII | GCCGAG | 1 cut(s) | 28 |
| NspI | RCATGY | 1 cut(s) | 56 |
| NspV | TTCGAA | 1 cut(s) | 457 |
| PaeI | GCATGC | 1 cut(s) | 56 |
| PagI | TCATGA | 1 cut(s) | 745 |
| PfeI | GAWTC | 2 cut(s) | 70, 221 |
| PkrI | GCNGC | 5 cut(s) | 129, 526, 690, 693, 696 |
| PleI | GAGTC | 3 cut(s) | 150, 687, 793 |
| PmaCI | CACGTG | 1 cut(s) | 543 |
| PmlI | CACGTG | 1 cut(s) | 543 |
| PpsI | GAGTC | 3 cut(s) | 150, 687, 793 |
| Ppu21I | YACGTR | 1 cut(s) | 543 |
| PsiI | TTATAA | 1 cut(s) | 792 |
| Psp6I | CCWGG | 2 cut(s) | 234, 429 |
| PspCI | CACGTG | 1 cut(s) | 543 |
| PspGI | CCWGG | 2 cut(s) | 234, 429 |
| PspN4I | GGNNCC | 3 cut(s) | 323, 719, 800 |
| PspPI | GGNCC | 2 cut(s) | 373, 427 |
| PsuI | RGATCY | 1 cut(s) | 420 |
| PvuII | CAGCTG | 1 cut(s) | 697 |
| RseI | CAYNNNNRTG | 2 cut(s) | 211, 595 |
| SaqAI | TTAA | 2 cut(s) | 414, 915 |
| SatI | GCNGC | 5 cut(s) | 128, 525, 689, 692, 695 |
| Sau3AI | GATC | 7 cut(s) | 178, 225, 365, 379, 420, 652, 859 |
| Sau96I | GGNCC | 2 cut(s) | 373, 427 |
| SchI | GAGTC | 3 cut(s) | 150, 688, 794 |
| ScrFI | CCNGG | 4 cut(s) | 236, 326, 431, 555 |
| SduI | GDGCHC | 2 cut(s) | 324, 745 |
| SfaNI | GCATC | 3 cut(s) | 256, 462, 567 |
| SfuI | TTCGAA | 1 cut(s) | 457 |
| SinI | GGWCC | 1 cut(s) | 427 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 211, 595 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| SphI | GCATGC | 1 cut(s) | 56 |
| Sse9I | AATT | 2 cut(s) | 4, 19 |
| SsiI | CCGC | 5 cut(s) | 447, 689, 692, 715, 721 |
| SspMI | CTAG | 3 cut(s) | 284, 621, 642 |
| StyD4I | CCNGG | 4 cut(s) | 234, 324, 429, 553 |
| StyI | CCWWGG | 2 cut(s) | 25, 369 |
| TaiI | ACGT | 2 cut(s) | 294, 545 |
| TaqI | TCGA | 3 cut(s) | 145, 224, 457 |
| TasI | AATT | 2 cut(s) | 4, 19 |
| TauI | GCSGC | 2 cut(s) | 691, 694 |
| TfiI | GAWTC | 2 cut(s) | 70, 221 |
| Tru1I | TTAA | 2 cut(s) | 414, 915 |
| Tru9I | TTAA | 2 cut(s) | 414, 915 |
| TscAI | CASTG | 1 cut(s) | 313 |
| TseI | GCWGC | 3 cut(s) | 127, 524, 694 |
| TspDTI | ATGAA | 3 cut(s) | 17, 250, 762 |
| TspRI | CASTG | 1 cut(s) | 313 |
| VpaK11BI | GGWCC | 1 cut(s) | 427 |
| XceI | RCATGY | 1 cut(s) | 56 |
| XspI | CTAG | 3 cut(s) | 284, 621, 642 |