ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 239 |
| Acc36I | ACCTGC | 1 cut(s) | 715 |
| AccB1I | GGYRCC | 1 cut(s) | 930 |
| AciI | CCGC | 4 cut(s) | 313, 370, 776, 937 |
| AclI | AACGTT | 1 cut(s) | 481 |
| AclWI | GGATC | 4 cut(s) | 10, 153, 495, 1058 |
| AcoI | YGGCCR | 2 cut(s) | 408, 1026 |
| AcsI | RAATTY | 1 cut(s) | 756 |
| AcuI | CTGAAG | 1 cut(s) | 740 |
| AcyI | GRCGYC | 1 cut(s) | 931 |
| AfeI | AGCGCT | 1 cut(s) | 64 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 222, 707, 1021 |
| AflIII | ACRYGT | 1 cut(s) | 645 |
| AgsI | TTSAA | 8 cut(s) | 13, 238, 736, 747, 869, 887, 958, 1157 |
| AjnI | CCWGG | 2 cut(s) | 39, 455 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 467, 499 |
| AluBI | AGCT | 7 cut(s) | 404, 593, 881, 923, 980, 998, 1139 |
| AluI | AGCT | 7 cut(s) | 404, 593, 881, 923, 980, 998, 1139 |
| Alw21I | GWGCWC | 1 cut(s) | 520 |
| Alw26I | GTCTC | 1 cut(s) | 294 |
| Alw44I | GTGCAC | 1 cut(s) | 516 |
| AlwI | GGATC | 4 cut(s) | 10, 153, 495, 1058 |
| Aor51HI | AGCGCT | 1 cut(s) | 64 |
| AoxI | GGCC | 3 cut(s) | 37, 408, 1026 |
| ApaLI | GTGCAC | 1 cut(s) | 516 |
| ApeKI | GCWGC | 6 cut(s) | 4, 338, 593, 596, 671, 1136 |
| ApoI | RAATTY | 1 cut(s) | 756 |
| AspLEI | GCGC | 2 cut(s) | 65, 933 |
| AspS9I | GGNCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| AsuC2I | CCSGG | 3 cut(s) | 132, 294, 1207 |
| AsuHPI | GGTGA | 2 cut(s) | 310, 722 |
| AvaII | GGWCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| BaeGI | GKGCMC | 1 cut(s) | 520 |
| BanI | GGYRCC | 1 cut(s) | 930 |
| BauI | CACGAG | 1 cut(s) | 204 |
| BbsI | GAAGAC | 1 cut(s) | 97 |
| Bbv12I | GWGCWC | 1 cut(s) | 520 |
| BbvI | GCAGC | 6 cut(s) | 16, 325, 580, 583, 658, 1148 |
| BccI | CCATC | 2 cut(s) | 70, 684 |
| BceAI | ACGGC | 1 cut(s) | 999 |
| BciT130I | CCWGG | 2 cut(s) | 41, 457 |
| BclI | TGATCA | 1 cut(s) | 853 |
| BcnI | CCSGG | 3 cut(s) | 132, 294, 1207 |
| BcoDI | GTCTC | 1 cut(s) | 294 |
| BfaI | CTAG | 5 cut(s) | 96, 101, 212, 624, 942 |
| BfmI | CTRYAG | 1 cut(s) | 1134 |
| BfoI | RGCGCY | 2 cut(s) | 66, 934 |
| BfuAI | ACCTGC | 1 cut(s) | 715 |
| BisI | GCNGC | 6 cut(s) | 5, 339, 594, 597, 672, 1137 |
| BlsI | GCNGC | 6 cut(s) | 6, 340, 595, 598, 673, 1138 |
| Bme1390I | CCNGG | 5 cut(s) | 41, 132, 294, 457, 1207 |
| Bme18I | GGWCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| BmgT120I | GGNCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| BmiI | GGNNCC | 2 cut(s) | 932, 968 |
| BmrFI | CCNGG | 5 cut(s) | 41, 132, 294, 457, 1207 |
| BmsI | GCATC | 6 cut(s) | 164, 186, 306, 333, 642, 763 |
| BpiI | GAAGAC | 1 cut(s) | 97 |
| BpmI | CTGGAG | 1 cut(s) | 443 |
| Bpu10I | CCTNAGC | 2 cut(s) | 342, 1071 |
| BpuMI | CCSGG | 3 cut(s) | 132, 294, 1207 |
| BsaBI | GATNNNNATC | 1 cut(s) | 570 |
| BsaHI | GRCGYC | 1 cut(s) | 931 |
| BsaJI | CCNNGG | 3 cut(s) | 131, 456, 617 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 535, 565 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 222, 707, 1021 |
| Bse118I | RCCGGY | 2 cut(s) | 320, 1028 |
| Bse1I | ACTGG | 1 cut(s) | 602 |
| Bse3DI | GCAATG | 1 cut(s) | 1058 |
| Bse8I | GATNNNNATC | 1 cut(s) | 570 |
| BseBI | CCWGG | 2 cut(s) | 41, 457 |
| BseDI | CCNNGG | 3 cut(s) | 131, 456, 617 |
| BseGI | GGATG | 5 cut(s) | 179, 352, 657, 695, 778 |
| BseJI | GATNNNNATC | 1 cut(s) | 570 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 222, 707, 1021 |
| BseMI | GCAATG | 1 cut(s) | 1058 |
| BseMII | CTCAG | 5 cut(s) | 140, 273, 356, 1085, 1131 |
| BseNI | ACTGG | 1 cut(s) | 602 |
| BseSI | GKGCMC | 1 cut(s) | 520 |
| BseXI | GCAGC | 6 cut(s) | 16, 325, 580, 583, 658, 1148 |
| BsgI | GTGCAG | 1 cut(s) | 582 |
| BshFI | GGCC | 3 cut(s) | 39, 410, 1028 |
| BshNI | GGYRCC | 1 cut(s) | 930 |
| BsiHKAI | GWGCWC | 1 cut(s) | 520 |
| BsiSI | CCGG | 5 cut(s) | 131, 293, 321, 1029, 1207 |
| BslFI | GGGAC | 1 cut(s) | 980 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 222, 707, 1021 |
| BsmAI | GTCTC | 1 cut(s) | 294 |
| BsmBI | CGTCTC | 1 cut(s) | 294 |
| BsmFI | GGGAC | 1 cut(s) | 980 |
| BsnI | GGCC | 3 cut(s) | 39, 410, 1028 |
| Bsp1286I | GDGCHC | 1 cut(s) | 520 |
| Bsp143I | GATC | 6 cut(s) | 15, 145, 487, 565, 853, 1063 |
| BspACI | CCGC | 4 cut(s) | 313, 370, 776, 937 |
| BspANI | GGCC | 3 cut(s) | 39, 410, 1028 |
| BspCNI | CTCAG | 5 cut(s) | 141, 272, 355, 1084, 1130 |
| BspLI | GGNNCC | 2 cut(s) | 932, 968 |
| BspMAI | CTGCAG | 1 cut(s) | 1138 |
| BspMI | ACCTGC | 1 cut(s) | 715 |
| BspPI | GGATC | 4 cut(s) | 10, 153, 495, 1058 |
| BspQI | GCTCTTC | 1 cut(s) | 888 |
| BspT107I | GGYRCC | 1 cut(s) | 930 |
| BsrDI | GCAATG | 1 cut(s) | 1058 |
| BsrFI | RCCGGY | 2 cut(s) | 320, 1028 |
| BsrI | ACTGG | 1 cut(s) | 602 |
| BssAI | RCCGGY | 2 cut(s) | 320, 1028 |
| BssECI | CCNNGG | 3 cut(s) | 131, 456, 617 |
| BssMI | GATC | 6 cut(s) | 15, 145, 487, 565, 853, 1063 |
| BssNI | GRCGYC | 1 cut(s) | 931 |
| BssSI | CACGAG | 1 cut(s) | 204 |
| BssT1I | CCWWGG | 1 cut(s) | 617 |
| Bst2BI | CACGAG | 1 cut(s) | 204 |
| Bst2UI | CCWGG | 2 cut(s) | 41, 457 |
| Bst4CI | ACNGT | 4 cut(s) | 280, 379, 416, 467 |
| Bst6I | CTCTTC | 2 cut(s) | 224, 888 |
| BstACI | GRCGYC | 1 cut(s) | 931 |
| BstC8I | GCNNGC | 2 cut(s) | 516, 935 |
| BstDEI | CTNAG | 7 cut(s) | 149, 259, 342, 822, 913, 1071, 1117 |
| BstF5I | GGATG | 5 cut(s) | 179, 352, 657, 695, 778 |
| BstH2I | RGCGCY | 2 cut(s) | 66, 934 |
| BstHHI | GCGC | 2 cut(s) | 65, 933 |
| BstKTI | GATC | 6 cut(s) | 18, 148, 490, 568, 856, 1066 |
| BstMAI | GTCTC | 1 cut(s) | 294 |
| BstMBI | GATC | 6 cut(s) | 15, 145, 487, 565, 853, 1063 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 330, 1076 |
| BstNI | CCWGG | 2 cut(s) | 41, 457 |
| BstNSI | RCATGY | 1 cut(s) | 649 |
| BstSCI | CCNGG | 5 cut(s) | 39, 130, 292, 455, 1205 |
| BstSFI | CTRYAG | 1 cut(s) | 1134 |
| BstSLI | GKGCMC | 1 cut(s) | 520 |
| BstV1I | GCAGC | 6 cut(s) | 16, 325, 580, 583, 658, 1148 |
| BstV2I | GAAGAC | 1 cut(s) | 97 |
| BstX2I | RGATCY | 2 cut(s) | 15, 145 |
| BstYI | RGATCY | 2 cut(s) | 15, 145 |
| BsuRI | GGCC | 3 cut(s) | 39, 410, 1028 |
| BtsCI | GGATG | 5 cut(s) | 179, 352, 657, 695, 778 |
| BtsI | GCAGTG | 1 cut(s) | 545 |
| BtsIMutI | CAGTG | 3 cut(s) | 276, 545, 1035 |
| BveI | ACCTGC | 1 cut(s) | 715 |
| Cac8I | GCNNGC | 2 cut(s) | 516, 935 |
| CfoI | GCGC | 2 cut(s) | 65, 933 |
| Cfr10I | RCCGGY | 2 cut(s) | 320, 1028 |
| Cfr13I | GGNCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| CviAII | CATG | 2 cut(s) | 646, 659 |
| DdeI | CTNAG | 7 cut(s) | 149, 259, 342, 822, 913, 1071, 1117 |
| DinI | GGCGCC | 1 cut(s) | 932 |
| DpnI | GATC | 6 cut(s) | 17, 147, 489, 567, 855, 1065 |
| DpnII | GATC | 6 cut(s) | 15, 145, 487, 565, 853, 1063 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 239 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 239 |
| EaeI | YGGCCR | 2 cut(s) | 408, 1026 |
| Eam1104I | CTCTTC | 2 cut(s) | 224, 888 |
| EarI | CTCTTC | 2 cut(s) | 224, 888 |
| Eco130I | CCWWGG | 1 cut(s) | 617 |
| Eco47I | GGWCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| Eco47III | AGCGCT | 1 cut(s) | 64 |
| Eco57I | CTGAAG | 1 cut(s) | 740 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1173 |
| EcoRII | CCWGG | 2 cut(s) | 39, 455 |
| EcoT14I | CCWWGG | 1 cut(s) | 617 |
| EcoT22I | ATGCAT | 1 cut(s) | 179 |
| EgeI | GGCGCC | 1 cut(s) | 932 |
| EheI | GGCGCC | 1 cut(s) | 932 |
| ErhI | CCWWGG | 1 cut(s) | 617 |
| Esp3I | CGTCTC | 1 cut(s) | 294 |
| FaeI | CATG | 2 cut(s) | 649, 662 |
| FaqI | GGGAC | 1 cut(s) | 980 |
| FatI | CATG | 2 cut(s) | 645, 658 |
| FauI | CCCGC | 1 cut(s) | 769 |
| FbaI | TGATCA | 1 cut(s) | 853 |
| Fnu4HI | GCNGC | 6 cut(s) | 5, 339, 594, 597, 672, 1137 |
| FokI | GGATG | 5 cut(s) | 186, 359, 664, 702, 785 |
| Fsp4HI | GCNGC | 6 cut(s) | 5, 339, 594, 597, 672, 1137 |
| FspBI | CTAG | 5 cut(s) | 96, 101, 212, 624, 942 |
| GlaI | GCGC | 2 cut(s) | 64, 932 |
| GluI | GCNGC | 6 cut(s) | 5, 339, 594, 597, 672, 1137 |
| GsuI | CTGGAG | 1 cut(s) | 443 |
| HaeII | RGCGCY | 2 cut(s) | 66, 934 |
| HaeIII | GGCC | 3 cut(s) | 39, 410, 1028 |
| HapII | CCGG | 5 cut(s) | 131, 293, 321, 1029, 1207 |
| HhaI | GCGC | 2 cut(s) | 65, 933 |
| Hin1I | GRCGYC | 1 cut(s) | 931 |
| Hin1II | CATG | 2 cut(s) | 649, 662 |
| Hin6I | GCGC | 2 cut(s) | 63, 931 |
| HinP1I | GCGC | 2 cut(s) | 63, 931 |
| HincII | GTYRAC | 2 cut(s) | 46, 91 |
| HindII | GTYRAC | 2 cut(s) | 46, 91 |
| HindIII | AAGCTT | 3 cut(s) | 402, 921, 996 |
| HinfI | GANTC | 2 cut(s) | 153, 1130 |
| HpaI | GTTAAC | 1 cut(s) | 46 |
| HpaII | CCGG | 5 cut(s) | 131, 293, 321, 1029, 1207 |
| HphI | GGTGA | 2 cut(s) | 310, 722 |
| Hpy166II | GTNNAC | 7 cut(s) | 46, 91, 203, 318, 365, 518, 713 |
| Hpy188III | TCNNGA | 8 cut(s) | 13, 204, 344, 357, 422, 640, 942, 1154 |
| Hpy8I | GTNNAC | 7 cut(s) | 46, 91, 203, 318, 365, 518, 713 |
| Hpy99I | CGWCG | 1 cut(s) | 305 |
| HpyAV | CCTTC | 3 cut(s) | 190, 469, 914 |
| HpyCH4III | ACNGT | 4 cut(s) | 280, 379, 416, 467 |
| HpyCH4IV | ACGT | 3 cut(s) | 287, 481, 1009 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 177, 501, 518, 599, 655, 1136 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 330, 1076 |
| HpyF3I | CTNAG | 7 cut(s) | 149, 259, 342, 822, 913, 1071, 1117 |
| HpySE526I | ACGT | 3 cut(s) | 287, 481, 1009 |
| Hsp92I | GRCGYC | 1 cut(s) | 931 |
| Hsp92II | CATG | 2 cut(s) | 649, 662 |
| HspAI | GCGC | 2 cut(s) | 63, 931 |
| KasI | GGCGCC | 1 cut(s) | 930 |
| Ksp22I | TGATCA | 1 cut(s) | 853 |
| KspAI | GTTAAC | 1 cut(s) | 46 |
| Kzo9I | GATC | 6 cut(s) | 15, 145, 487, 565, 853, 1063 |
| LguI | GCTCTTC | 1 cut(s) | 888 |
| Lsp1109I | GCAGC | 6 cut(s) | 16, 325, 580, 583, 658, 1148 |
| LweI | GCATC | 6 cut(s) | 164, 186, 306, 333, 642, 763 |
| MaeI | CTAG | 5 cut(s) | 96, 101, 212, 624, 942 |
| MaeII | ACGT | 3 cut(s) | 287, 481, 1009 |
| MaeIII | GTNAC | 2 cut(s) | 283, 541 |
| MalI | GATC | 6 cut(s) | 17, 147, 489, 567, 855, 1065 |
| MboI | GATC | 6 cut(s) | 15, 145, 487, 565, 853, 1063 |
| MboII | GAAGA | 5 cut(s) | 97, 211, 674, 875, 929 |
| MfeI | CAATTG | 1 cut(s) | 508 |
| MflI | RGATCY | 2 cut(s) | 15, 145 |
| MhlI | GDGCHC | 1 cut(s) | 520 |
| Mly113I | GGCGCC | 1 cut(s) | 931 |
| MlyI | GAGTC | 1 cut(s) | 162 |
| MmeI | TCCRAC | 2 cut(s) | 283, 709 |
| Mph1103I | ATGCAT | 1 cut(s) | 179 |
| MseI | TTAA | 4 cut(s) | 21, 45, 1224, 1234 |
| MslI | CAYNNNNRTG | 1 cut(s) | 650 |
| MspA1I | CMGCKG | 2 cut(s) | 370, 937 |
| MspI | CCGG | 5 cut(s) | 131, 293, 321, 1029, 1207 |
| MspR9I | CCNGG | 5 cut(s) | 41, 132, 294, 457, 1207 |
| MunI | CAATTG | 1 cut(s) | 508 |
| MvaI | CCWGG | 2 cut(s) | 41, 457 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 330, 1076 |
| NarI | GGCGCC | 1 cut(s) | 931 |
| NciI | CCSGG | 3 cut(s) | 132, 294, 1207 |
| NdeII | GATC | 6 cut(s) | 15, 145, 487, 565, 853, 1063 |
| NlaIII | CATG | 2 cut(s) | 649, 662 |
| NlaIV | GGNNCC | 2 cut(s) | 932, 968 |
| NmuCI | GTSAC | 1 cut(s) | 541 |
| NsiI | ATGCAT | 1 cut(s) | 179 |
| NspI | RCATGY | 1 cut(s) | 649 |
| PciI | ACATGT | 1 cut(s) | 645 |
| PciSI | GCTCTTC | 1 cut(s) | 888 |
| PfeI | GAWTC | 1 cut(s) | 1130 |
| PkrI | GCNGC | 6 cut(s) | 6, 340, 595, 598, 673, 1138 |
| PleI | GAGTC | 1 cut(s) | 161 |
| PluTI | GGCGCC | 1 cut(s) | 934 |
| PpsI | GAGTC | 1 cut(s) | 161 |
| PpuMI | RGGWCCY | 1 cut(s) | 1173 |
| PscI | ACATGT | 1 cut(s) | 645 |
| Psp1406I | AACGTT | 1 cut(s) | 481 |
| Psp5II | RGGWCCY | 1 cut(s) | 1173 |
| Psp6I | CCWGG | 2 cut(s) | 39, 455 |
| PspGI | CCWGG | 2 cut(s) | 39, 455 |
| PspN4I | GGNNCC | 2 cut(s) | 932, 968 |
| PspPI | GGNCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| PspPPI | RGGWCCY | 1 cut(s) | 1173 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1149, 1181 |
| PstI | CTGCAG | 1 cut(s) | 1138 |
| PsuI | RGATCY | 2 cut(s) | 15, 145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 650 |
| SapI | GCTCTTC | 1 cut(s) | 888 |
| SaqAI | TTAA | 4 cut(s) | 21, 45, 1224, 1234 |
| SatI | GCNGC | 6 cut(s) | 5, 339, 594, 597, 672, 1137 |
| Sau3AI | GATC | 6 cut(s) | 15, 145, 487, 565, 853, 1063 |
| Sau96I | GGNCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| SchI | GAGTC | 1 cut(s) | 162 |
| ScrFI | CCNGG | 5 cut(s) | 41, 132, 294, 457, 1207 |
| SduI | GDGCHC | 1 cut(s) | 520 |
| SfaNI | GCATC | 6 cut(s) | 164, 186, 306, 333, 642, 763 |
| SfcI | CTRYAG | 1 cut(s) | 1134 |
| SfoI | GGCGCC | 1 cut(s) | 932 |
| SinI | GGWCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 650 |
| SsiI | CCGC | 4 cut(s) | 313, 370, 776, 937 |
| SspDI | GGCGCC | 1 cut(s) | 930 |
| SspI | AATATT | 1 cut(s) | 1108 |
| SspMI | CTAG | 5 cut(s) | 96, 101, 212, 624, 942 |
| StyD4I | CCNGG | 5 cut(s) | 39, 130, 292, 455, 1205 |
| StyI | CCWWGG | 1 cut(s) | 617 |
| TaaI | ACNGT | 4 cut(s) | 280, 379, 416, 467 |
| TaiI | ACGT | 3 cut(s) | 290, 484, 1012 |
| TaqI | TCGA | 5 cut(s) | 74, 141, 156, 273, 639 |
| TfiI | GAWTC | 1 cut(s) | 1130 |
| Tru1I | TTAA | 4 cut(s) | 21, 45, 1224, 1234 |
| Tru9I | TTAA | 4 cut(s) | 21, 45, 1224, 1234 |
| TscAI | CASTG | 3 cut(s) | 283, 552, 1042 |
| TseFI | GTSAC | 1 cut(s) | 541 |
| TseI | GCWGC | 6 cut(s) | 4, 338, 593, 596, 671, 1136 |
| Tsp45I | GTSAC | 1 cut(s) | 541 |
| TspDTI | ATGAA | 3 cut(s) | 675, 854, 1116 |
| TspGWI | ACGGA | 3 cut(s) | 65, 815, 837 |
| TspRI | CASTG | 3 cut(s) | 283, 552, 1042 |
| VneI | GTGCAC | 1 cut(s) | 516 |
| VpaK11BI | GGWCC | 5 cut(s) | 128, 362, 693, 967, 1173 |
| XapI | RAATTY | 1 cut(s) | 756 |
| XbaI | TCTAGA | 1 cut(s) | 941 |
| XceI | RCATGY | 1 cut(s) | 649 |
| XspI | CTAG | 5 cut(s) | 96, 101, 212, 624, 942 |
| Zsp2I | ATGCAT | 1 cut(s) | 179 |