ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1458 |
| AccI | GTMKAC | 1 cut(s) | 441 |
| AccII | CGCG | 1 cut(s) | 1013 |
| AciI | CCGC | 5 cut(s) | 168, 374, 495, 519, 1013 |
| AclWI | GGATC | 2 cut(s) | 890, 1405 |
| AcoI | YGGCCR | 2 cut(s) | 165, 453 |
| AcsI | RAATTY | 2 cut(s) | 106, 605 |
| AcvI | CACGTG | 1 cut(s) | 244 |
| AfaI | GTAC | 6 cut(s) | 276, 886, 1075, 1112, 1152, 1384 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 189, 341 |
| AgsI | TTSAA | 3 cut(s) | 187, 211, 1108 |
| AjiI | CACGTC | 1 cut(s) | 319 |
| AjnI | CCWGG | 1 cut(s) | 148 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 650, 682 |
| AleI | CACNNNNGTG | 1 cut(s) | 1400 |
| AluBI | AGCT | 4 cut(s) | 941, 1009, 1123, 1211 |
| AluI | AGCT | 4 cut(s) | 941, 1009, 1123, 1211 |
| Alw26I | GTCTC | 1 cut(s) | 471 |
| AlwI | GGATC | 2 cut(s) | 890, 1405 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1162 |
| Ama87I | CYCGRG | 1 cut(s) | 1557 |
| AoxI | GGCC | 4 cut(s) | 165, 191, 453, 1277 |
| ApeKI | GCWGC | 2 cut(s) | 400, 1211 |
| ApoI | RAATTY | 2 cut(s) | 106, 605 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 812 |
| AspLEI | GCGC | 1 cut(s) | 473 |
| AspS9I | GGNCC | 5 cut(s) | 332, 614, 772, 891, 1277 |
| AsuC2I | CCSGG | 4 cut(s) | 776, 1275, 1558, 1559 |
| AsuHPI | GGTGA | 1 cut(s) | 1070 |
| AsuII | TTCGAA | 1 cut(s) | 1265 |
| AvaI | CYCGRG | 1 cut(s) | 1557 |
| AvaII | GGWCC | 4 cut(s) | 332, 614, 772, 891 |
| BanII | GRGCYC | 1 cut(s) | 71 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1362, 1394 |
| BbrPI | CACGTG | 1 cut(s) | 244 |
| BbsI | GAAGAC | 1 cut(s) | 1009 |
| BbvI | GCAGC | 2 cut(s) | 387, 1198 |
| BccI | CCATC | 7 cut(s) | 53, 1062, 1146, 1184, 1277, 1394, 1463 |
| BceAI | ACGGC | 2 cut(s) | 1412, 1501 |
| BciT130I | CCWGG | 1 cut(s) | 150 |
| BclI | TGATCA | 1 cut(s) | 748 |
| BcnI | CCSGG | 4 cut(s) | 776, 1275, 1558, 1559 |
| BcoDI | GTCTC | 1 cut(s) | 471 |
| BfaI | CTAG | 6 cut(s) | 566, 717, 738, 933, 1176, 1208 |
| BfoI | RGCGCY | 1 cut(s) | 474 |
| BisI | GCNGC | 4 cut(s) | 168, 401, 496, 1212 |
| BlsI | GCNGC | 4 cut(s) | 169, 402, 497, 1213 |
| BmcAI | AGTACT | 1 cut(s) | 1112 |
| Bme1390I | CCNGG | 5 cut(s) | 150, 776, 1275, 1558, 1559 |
| Bme18I | GGWCC | 4 cut(s) | 332, 614, 772, 891 |
| BmeT110I | CYCGRG | 1 cut(s) | 1557 |
| BmgBI | CACGTC | 1 cut(s) | 319 |
| BmgT120I | GGNCC | 5 cut(s) | 332, 614, 772, 891, 1277 |
| BmiI | GGNNCC | 6 cut(s) | 68, 333, 386, 460, 892, 1278 |
| BmrFI | CCNGG | 5 cut(s) | 150, 776, 1275, 1558, 1559 |
| BmrI | ACTGGG | 1 cut(s) | 897 |
| BmsI | GCATC | 1 cut(s) | 15 |
| BmuI | ACTGGG | 1 cut(s) | 897 |
| BpiI | GAAGAC | 1 cut(s) | 1009 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 993, 1025, 1112, 1144 |
| BpmI | CTGGAG | 1 cut(s) | 495 |
| Bpu14I | TTCGAA | 1 cut(s) | 1265 |
| BpuEI | CTTGAG | 2 cut(s) | 1025, 1232 |
| BpuMI | CCSGG | 4 cut(s) | 776, 1275, 1558, 1559 |
| BsaAI | YACGTR | 2 cut(s) | 244, 1382 |
| BsaJI | CCNNGG | 5 cut(s) | 149, 429, 617, 1274, 1557 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 857, 868, 887, 898 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 189, 341 |
| Bse118I | RCCGGY | 1 cut(s) | 461 |
| Bse1I | ACTGG | 1 cut(s) | 892 |
| Bse3DI | GCAATG | 1 cut(s) | 1358 |
| BseBI | CCWGG | 1 cut(s) | 150 |
| BseDI | CCNNGG | 5 cut(s) | 149, 429, 617, 1274, 1557 |
| BseGI | GGATG | 2 cut(s) | 1138, 1234 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 189, 341 |
| BseMI | GCAATG | 1 cut(s) | 1358 |
| BseMII | CTCAG | 4 cut(s) | 164, 953, 1137, 1380 |
| BseNI | ACTGG | 1 cut(s) | 892 |
| BseRI | GAGGAG | 5 cut(s) | 433, 446, 522, 839, 962 |
| BseXI | GCAGC | 2 cut(s) | 387, 1198 |
| Bsh1236I | CGCG | 1 cut(s) | 1013 |
| BshFI | GGCC | 4 cut(s) | 167, 193, 455, 1279 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1557 |
| BsiSI | CCGG | 6 cut(s) | 456, 462, 710, 775, 1274, 1558 |
| BslFI | GGGAC | 4 cut(s) | 162, 904, 1120, 1540 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 189, 341 |
| BsmAI | GTCTC | 1 cut(s) | 471 |
| BsmBI | CGTCTC | 1 cut(s) | 471 |
| BsmFI | GGGAC | 4 cut(s) | 162, 904, 1120, 1540 |
| BsmI | GAATGC | 1 cut(s) | 577 |
| BsnI | GGCC | 4 cut(s) | 167, 193, 455, 1279 |
| BsoBI | CYCGRG | 1 cut(s) | 1557 |
| Bsp119I | TTCGAA | 1 cut(s) | 1265 |
| Bsp1286I | GDGCHC | 1 cut(s) | 71 |
| Bsp143I | GATC | 3 cut(s) | 748, 895, 1410 |
| BspACI | CCGC | 5 cut(s) | 168, 374, 495, 519, 1013 |
| BspANI | GGCC | 4 cut(s) | 167, 193, 455, 1279 |
| BspCNI | CTCAG | 4 cut(s) | 165, 954, 1138, 1379 |
| BspFNI | CGCG | 1 cut(s) | 1013 |
| BspHI | TCATGA | 1 cut(s) | 838 |
| BspLI | GGNNCC | 6 cut(s) | 68, 333, 386, 460, 892, 1278 |
| BspPI | GGATC | 2 cut(s) | 890, 1405 |
| BspT104I | TTCGAA | 1 cut(s) | 1265 |
| BsrDI | GCAATG | 1 cut(s) | 1358 |
| BsrFI | RCCGGY | 1 cut(s) | 461 |
| BsrI | ACTGG | 1 cut(s) | 892 |
| BssAI | RCCGGY | 1 cut(s) | 461 |
| BssECI | CCNNGG | 5 cut(s) | 149, 429, 617, 1274, 1557 |
| BssMI | GATC | 3 cut(s) | 748, 895, 1410 |
| Bst2UI | CCWGG | 1 cut(s) | 150 |
| Bst4CI | ACNGT | 1 cut(s) | 704 |
| Bst6I | CTCTTC | 2 cut(s) | 803, 1089 |
| BstBAI | YACGTR | 2 cut(s) | 244, 1382 |
| BstBI | TTCGAA | 1 cut(s) | 1265 |
| BstC8I | GCNNGC | 1 cut(s) | 1011 |
| BstDEI | CTNAG | 6 cut(s) | 90, 173, 962, 1146, 1366, 1448 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 187 |
| BstF5I | GGATG | 2 cut(s) | 1138, 1234 |
| BstFNI | CGCG | 1 cut(s) | 1013 |
| BstH2I | RGCGCY | 1 cut(s) | 474 |
| BstHHI | GCGC | 1 cut(s) | 473 |
| BstKTI | GATC | 3 cut(s) | 751, 898, 1413 |
| BstMAI | GTCTC | 1 cut(s) | 471 |
| BstMBI | GATC | 3 cut(s) | 748, 895, 1410 |
| BstNI | CCWGG | 1 cut(s) | 150 |
| BstNSI | RCATGY | 3 cut(s) | 217, 292, 653 |
| BstSCI | CCNGG | 5 cut(s) | 148, 774, 1273, 1556, 1557 |
| BstSNI | TACGTA | 1 cut(s) | 1382 |
| BstUI | CGCG | 1 cut(s) | 1013 |
| BstV1I | GCAGC | 2 cut(s) | 387, 1198 |
| BstV2I | GAAGAC | 1 cut(s) | 1009 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 766 |
| BsuRI | GGCC | 4 cut(s) | 167, 193, 455, 1279 |
| BtgZI | GCGATG | 1 cut(s) | 1081 |
| BtrI | CACGTC | 1 cut(s) | 319 |
| BtsCI | GGATG | 2 cut(s) | 1138, 1234 |
| BtsI | GCAGTG | 1 cut(s) | 1353 |
| BtsIMutI | CAGTG | 1 cut(s) | 1353 |
| Cac8I | GCNNGC | 1 cut(s) | 1011 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1162 |
| CciI | TCATGA | 1 cut(s) | 838 |
| CfoI | GCGC | 1 cut(s) | 473 |
| Cfr10I | RCCGGY | 1 cut(s) | 461 |
| Cfr13I | GGNCC | 5 cut(s) | 332, 614, 772, 891, 1277 |
| Cfr9I | CCCGGG | 1 cut(s) | 1557 |
| CseI | GACGC | 1 cut(s) | 1414 |
| Csp6I | GTAC | 6 cut(s) | 275, 885, 1074, 1111, 1151, 1383 |
| CviQI | GTAC | 6 cut(s) | 275, 885, 1074, 1111, 1151, 1383 |
| DdeI | CTNAG | 6 cut(s) | 90, 173, 962, 1146, 1366, 1448 |
| DpnI | GATC | 3 cut(s) | 750, 897, 1412 |
| DpnII | GATC | 3 cut(s) | 748, 895, 1410 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1458 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1458 |
| EaeI | YGGCCR | 2 cut(s) | 165, 453 |
| Eam1104I | CTCTTC | 2 cut(s) | 803, 1089 |
| EarI | CTCTTC | 2 cut(s) | 803, 1089 |
| Eco105I | TACGTA | 1 cut(s) | 1382 |
| Eco147I | AGGCCT | 1 cut(s) | 193 |
| Eco24I | GRGCYC | 1 cut(s) | 71 |
| Eco47I | GGWCC | 4 cut(s) | 332, 614, 772, 891 |
| Eco72I | CACGTG | 1 cut(s) | 244 |
| Eco88I | CYCGRG | 1 cut(s) | 1557 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 187 |
| EcoO109I | RGGNCCY | 1 cut(s) | 332 |
| EcoRII | CCWGG | 1 cut(s) | 148 |
| EcoT22I | ATGCAT | 2 cut(s) | 219, 294 |
| EcoT38I | GRGCYC | 1 cut(s) | 71 |
| Esp3I | CGTCTC | 1 cut(s) | 471 |
| FaqI | GGGAC | 4 cut(s) | 162, 904, 1120, 1540 |
| FauNDI | CATATG | 2 cut(s) | 24, 1437 |
| FbaI | TGATCA | 1 cut(s) | 748 |
| FblI | GTMKAC | 1 cut(s) | 441 |
| Fnu4HI | GCNGC | 4 cut(s) | 168, 401, 496, 1212 |
| FokI | GGATG | 2 cut(s) | 1125, 1241 |
| FriOI | GRGCYC | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 4 cut(s) | 168, 401, 496, 1212 |
| FspBI | CTAG | 6 cut(s) | 566, 717, 738, 933, 1176, 1208 |
| GlaI | GCGC | 1 cut(s) | 472 |
| GluI | GCNGC | 4 cut(s) | 168, 401, 496, 1212 |
| GsuI | CTGGAG | 1 cut(s) | 495 |
| HaeII | RGCGCY | 1 cut(s) | 474 |
| HaeIII | GGCC | 4 cut(s) | 167, 193, 455, 1279 |
| HapII | CCGG | 6 cut(s) | 456, 462, 710, 775, 1274, 1558 |
| HgaI | GACGC | 1 cut(s) | 1414 |
| HhaI | GCGC | 1 cut(s) | 473 |
| Hin6I | GCGC | 1 cut(s) | 471 |
| HinP1I | GCGC | 1 cut(s) | 471 |
| HincII | GTYRAC | 3 cut(s) | 442, 590, 1445 |
| HindII | GTYRAC | 3 cut(s) | 442, 590, 1445 |
| HindIII | AAGCTT | 1 cut(s) | 939 |
| HinfI | GANTC | 9 cut(s) | 143, 154, 175, 238, 973, 1159, 1364, 1441, 1526 |
| HpaII | CCGG | 6 cut(s) | 456, 462, 710, 775, 1274, 1558 |
| HphI | GGTGA | 1 cut(s) | 1070 |
| Hpy166II | GTNNAC | 5 cut(s) | 442, 590, 624, 1074, 1445 |
| Hpy188I | TCNGA | 6 cut(s) | 618, 748, 818, 963, 1308, 1369 |
| Hpy188III | TCNNGA | 8 cut(s) | 56, 839, 925, 970, 1042, 1315, 1361, 1414 |
| Hpy8I | GTNNAC | 5 cut(s) | 442, 590, 624, 1074, 1445 |
| Hpy99I | CGWCG | 3 cut(s) | 384, 418, 446 |
| HpyAV | CCTTC | 8 cut(s) | 118, 292, 430, 542, 795, 1272, 1321, 1411 |
| HpyCH4III | ACNGT | 1 cut(s) | 704 |
| HpyCH4IV | ACGT | 6 cut(s) | 243, 318, 348, 1133, 1381, 1470 |
| HpyF3I | CTNAG | 6 cut(s) | 90, 173, 962, 1146, 1366, 1448 |
| HpySE526I | ACGT | 6 cut(s) | 243, 318, 348, 1133, 1381, 1470 |
| HspAI | GCGC | 1 cut(s) | 471 |
| Ksp22I | TGATCA | 1 cut(s) | 748 |
| Kzo9I | GATC | 3 cut(s) | 748, 895, 1410 |
| LmnI | GCTCC | 5 cut(s) | 66, 376, 384, 458, 1343 |
| Lsp1109I | GCAGC | 2 cut(s) | 387, 1198 |
| LweI | GCATC | 1 cut(s) | 15 |
| MaeI | CTAG | 6 cut(s) | 566, 717, 738, 933, 1176, 1208 |
| MaeII | ACGT | 6 cut(s) | 243, 318, 348, 1133, 1381, 1470 |
| MaeIII | GTNAC | 4 cut(s) | 344, 914, 1393, 1402 |
| MalI | GATC | 3 cut(s) | 750, 897, 1412 |
| MboI | GATC | 3 cut(s) | 748, 895, 1410 |
| MboII | GAAGA | 7 cut(s) | 370, 670, 817, 820, 1009, 1106, 1382 |
| MhlI | GDGCHC | 1 cut(s) | 71 |
| MluCI | AATT | 4 cut(s) | 45, 106, 605, 1473 |
| MlyI | GAGTC | 5 cut(s) | 163, 184, 982, 1358, 1450 |
| MmeI | TCCRAC | 2 cut(s) | 648, 1321 |
| Mph1103I | ATGCAT | 2 cut(s) | 219, 294 |
| MroXI | GAANNNNTTC | 1 cut(s) | 812 |
| MseI | TTAA | 6 cut(s) | 48, 104, 579, 609, 1422, 1532 |
| MslI | CAYNNNNRTG | 4 cut(s) | 222, 246, 843, 1400 |
| MspI | CCGG | 6 cut(s) | 456, 462, 710, 775, 1274, 1558 |
| MspR9I | CCNGG | 5 cut(s) | 150, 776, 1275, 1558, 1559 |
| Mva1269I | GAATGC | 1 cut(s) | 577 |
| MvaI | CCWGG | 1 cut(s) | 150 |
| MvnI | CGCG | 1 cut(s) | 1013 |
| NciI | CCSGG | 4 cut(s) | 776, 1275, 1558, 1559 |
| NdeI | CATATG | 2 cut(s) | 24, 1437 |
| NdeII | GATC | 3 cut(s) | 748, 895, 1410 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 333, 386, 460, 892, 1278 |
| NmeAIII | GCCGAG | 1 cut(s) | 454 |
| NmuCI | GTSAC | 2 cut(s) | 1393, 1402 |
| NsiI | ATGCAT | 2 cut(s) | 219, 294 |
| NspI | RCATGY | 3 cut(s) | 217, 292, 653 |
| NspV | TTCGAA | 1 cut(s) | 1265 |
| OliI | CACNNNNGTG | 1 cut(s) | 1400 |
| PagI | TCATGA | 1 cut(s) | 838 |
| PceI | AGGCCT | 1 cut(s) | 193 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1412 |
| PctI | GAATGC | 1 cut(s) | 577 |
| PdmI | GAANNNNTTC | 1 cut(s) | 812 |
| PfeI | GAWTC | 4 cut(s) | 143, 238, 1159, 1526 |
| PflFI | GACNNNGTC | 1 cut(s) | 688 |
| PfoI | TCCNGGA | 1 cut(s) | 774 |
| PkrI | GCNGC | 4 cut(s) | 169, 402, 497, 1213 |
| PleI | GAGTC | 5 cut(s) | 162, 183, 981, 1358, 1449 |
| PmaCI | CACGTG | 1 cut(s) | 244 |
| PmlI | CACGTG | 1 cut(s) | 244 |
| PpsI | GAGTC | 5 cut(s) | 162, 183, 981, 1358, 1449 |
| Ppu21I | YACGTR | 2 cut(s) | 244, 1382 |
| PpuMI | RGGWCCY | 1 cut(s) | 332 |
| Psp5II | RGGWCCY | 1 cut(s) | 332 |
| Psp6I | CCWGG | 1 cut(s) | 148 |
| PspCI | CACGTG | 1 cut(s) | 244 |
| PspGI | CCWGG | 1 cut(s) | 148 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 333, 386, 460, 892, 1278 |
| PspPI | GGNCC | 5 cut(s) | 332, 614, 772, 891, 1277 |
| PspPPI | RGGWCCY | 1 cut(s) | 332 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1162 |
| PsyI | GACNNNGTC | 1 cut(s) | 688 |
| RsaI | GTAC | 6 cut(s) | 276, 886, 1075, 1112, 1152, 1384 |
| RsaNI | GTAC | 6 cut(s) | 275, 885, 1074, 1111, 1151, 1383 |
| RseI | CAYNNNNRTG | 4 cut(s) | 222, 246, 843, 1400 |
| SalI | GTCGAC | 1 cut(s) | 440 |
| SaqAI | TTAA | 6 cut(s) | 48, 104, 579, 609, 1422, 1532 |
| SatI | GCNGC | 4 cut(s) | 168, 401, 496, 1212 |
| Sau3AI | GATC | 3 cut(s) | 748, 895, 1410 |
| Sau96I | GGNCC | 5 cut(s) | 332, 614, 772, 891, 1277 |
| ScaI | AGTACT | 1 cut(s) | 1112 |
| SchI | GAGTC | 5 cut(s) | 163, 184, 982, 1358, 1450 |
| ScrFI | CCNGG | 5 cut(s) | 150, 776, 1275, 1558, 1559 |
| SduI | GDGCHC | 1 cut(s) | 71 |
| SfaNI | GCATC | 1 cut(s) | 15 |
| SfuI | TTCGAA | 1 cut(s) | 1265 |
| SinI | GGWCC | 4 cut(s) | 332, 614, 772, 891 |
| SmaI | CCCGGG | 1 cut(s) | 1559 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 222, 246, 843, 1400 |
| SmlI | CTYRAG | 2 cut(s) | 1040, 1247 |
| SmoI | CTYRAG | 2 cut(s) | 1040, 1247 |
| SnaBI | TACGTA | 1 cut(s) | 1382 |
| Sse9I | AATT | 4 cut(s) | 45, 106, 605, 1473 |
| SseBI | AGGCCT | 1 cut(s) | 193 |
| SsiI | CCGC | 5 cut(s) | 168, 374, 495, 519, 1013 |
| SspI | AATATT | 2 cut(s) | 370, 1321 |
| SspMI | CTAG | 6 cut(s) | 566, 717, 738, 933, 1176, 1208 |
| StuI | AGGCCT | 1 cut(s) | 193 |
| StyD4I | CCNGG | 5 cut(s) | 148, 774, 1273, 1556, 1557 |
| TaaI | ACNGT | 1 cut(s) | 704 |
| TaiI | ACGT | 6 cut(s) | 246, 321, 351, 1136, 1384, 1473 |
| TaqI | TCGA | 4 cut(s) | 441, 529, 640, 1265 |
| TaqII | GACCGA | 1 cut(s) | 908 |
| TasI | AATT | 4 cut(s) | 45, 106, 605, 1473 |
| TatI | WGTACW | 3 cut(s) | 274, 1073, 1110 |
| TauI | GCSGC | 2 cut(s) | 170, 498 |
| TfiI | GAWTC | 4 cut(s) | 143, 238, 1159, 1526 |
| Tru1I | TTAA | 6 cut(s) | 48, 104, 579, 609, 1422, 1532 |
| Tru9I | TTAA | 6 cut(s) | 48, 104, 579, 609, 1422, 1532 |
| TscAI | CASTG | 1 cut(s) | 1353 |
| TseFI | GTSAC | 2 cut(s) | 1393, 1402 |
| TseI | GCWGC | 2 cut(s) | 400, 1211 |
| Tsp45I | GTSAC | 2 cut(s) | 1393, 1402 |
| TspDTI | ATGAA | 7 cut(s) | 234, 299, 827, 861, 1211, 1254, 1510 |
| TspGWI | ACGGA | 1 cut(s) | 397 |
| TspMI | CCCGGG | 1 cut(s) | 1557 |
| TspRI | CASTG | 1 cut(s) | 1353 |
| Tth111I | GACNNNGTC | 1 cut(s) | 688 |
| VpaK11BI | GGWCC | 4 cut(s) | 332, 614, 772, 891 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 187 |
| XapI | RAATTY | 2 cut(s) | 106, 605 |
| XceI | RCATGY | 3 cut(s) | 217, 292, 653 |
| XmaI | CCCGGG | 1 cut(s) | 1557 |
| XmiI | GTMKAC | 1 cut(s) | 441 |
| XmnI | GAANNNNTTC | 1 cut(s) | 812 |
| XspI | CTAG | 6 cut(s) | 566, 717, 738, 933, 1176, 1208 |
| ZrmI | AGTACT | 1 cut(s) | 1112 |
| Zsp2I | ATGCAT | 2 cut(s) | 219, 294 |