ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 17 - 164 | 1e-05 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 379 |
| AccIII | TCCGGA | 1 cut(s) | 196 |
| AciI | CCGC | 3 cut(s) | 72, 318, 595 |
| AclI | AACGTT | 1 cut(s) | 439 |
| AcsI | RAATTY | 1 cut(s) | 349 |
| AfaI | GTAC | 1 cut(s) | 43 |
| AgsI | TTSAA | 4 cut(s) | 19, 437, 608, 775 |
| AluBI | AGCT | 3 cut(s) | 292, 430, 499 |
| AluI | AGCT | 3 cut(s) | 292, 430, 499 |
| Alw26I | GTCTC | 3 cut(s) | 329, 560, 714 |
| Ama87I | CYCGRG | 1 cut(s) | 559 |
| Aor13HI | TCCGGA | 1 cut(s) | 196 |
| AoxI | GGCC | 2 cut(s) | 110, 164 |
| ApeKI | GCWGC | 1 cut(s) | 470 |
| ApoI | RAATTY | 1 cut(s) | 349 |
| AseI | ATTAAT | 1 cut(s) | 230 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 350 |
| AspS9I | GGNCC | 3 cut(s) | 164, 260, 690 |
| AsuHPI | GGTGA | 1 cut(s) | 290 |
| AvaI | CYCGRG | 1 cut(s) | 559 |
| AvaII | GGWCC | 2 cut(s) | 260, 690 |
| BbvI | GCAGC | 1 cut(s) | 457 |
| BccI | CCATC | 1 cut(s) | 207 |
| BciVI | GTATCC | 1 cut(s) | 151 |
| BclI | TGATCA | 1 cut(s) | 523 |
| BcoDI | GTCTC | 3 cut(s) | 329, 560, 714 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfuI | GTATCC | 1 cut(s) | 151 |
| BisI | GCNGC | 1 cut(s) | 471 |
| BlsI | GCNGC | 1 cut(s) | 472 |
| Bme18I | GGWCC | 2 cut(s) | 260, 690 |
| BmeT110I | CYCGRG | 1 cut(s) | 559 |
| BmgT120I | GGNCC | 3 cut(s) | 164, 260, 690 |
| BmiI | GGNNCC | 4 cut(s) | 165, 261, 599, 691 |
| BmsI | GCATC | 2 cut(s) | 499, 643 |
| BsaI | GGTCTC | 1 cut(s) | 560 |
| BsaJI | CCNNGG | 1 cut(s) | 263 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 571, 601 |
| Bse1I | ACTGG | 2 cut(s) | 167, 184 |
| Bse3DI | GCAATG | 1 cut(s) | 731 |
| BseAI | TCCGGA | 1 cut(s) | 196 |
| BseDI | CCNNGG | 1 cut(s) | 263 |
| BseGI | GGATG | 2 cut(s) | 41, 514 |
| BseMI | GCAATG | 1 cut(s) | 731 |
| BseMII | CTCAG | 2 cut(s) | 324, 771 |
| BseNI | ACTGG | 2 cut(s) | 167, 184 |
| BseXI | GCAGC | 1 cut(s) | 457 |
| BshFI | GGCC | 2 cut(s) | 112, 166 |
| BsiHKCI | CYCGRG | 1 cut(s) | 559 |
| BsiSI | CCGG | 1 cut(s) | 197 |
| BslFI | GGGAC | 1 cut(s) | 415 |
| BsmAI | GTCTC | 3 cut(s) | 329, 560, 714 |
| BsmFI | GGGAC | 1 cut(s) | 415 |
| BsnI | GGCC | 2 cut(s) | 112, 166 |
| Bso31I | GGTCTC | 1 cut(s) | 560 |
| BsoBI | CYCGRG | 1 cut(s) | 559 |
| Bsp13I | TCCGGA | 1 cut(s) | 196 |
| Bsp143I | GATC | 2 cut(s) | 456, 523 |
| BspACI | CCGC | 3 cut(s) | 72, 318, 595 |
| BspANI | GGCC | 2 cut(s) | 112, 166 |
| BspCNI | CTCAG | 2 cut(s) | 325, 772 |
| BspEI | TCCGGA | 1 cut(s) | 196 |
| BspLI | GGNNCC | 4 cut(s) | 165, 261, 599, 691 |
| BspTNI | GGTCTC | 1 cut(s) | 560 |
| BsrDI | GCAATG | 1 cut(s) | 731 |
| BsrI | ACTGG | 2 cut(s) | 167, 184 |
| BssECI | CCNNGG | 1 cut(s) | 263 |
| BssMI | GATC | 2 cut(s) | 456, 523 |
| BssT1I | CCWWGG | 1 cut(s) | 263 |
| Bst4CI | ACNGT | 1 cut(s) | 46 |
| Bst6I | CTCTTC | 2 cut(s) | 86, 413 |
| BstC8I | GCNNGC | 2 cut(s) | 74, 78 |
| BstDEI | CTNAG | 3 cut(s) | 333, 621, 780 |
| BstF5I | GGATG | 2 cut(s) | 41, 514 |
| BstKTI | GATC | 2 cut(s) | 459, 526 |
| BstMAI | GTCTC | 3 cut(s) | 329, 560, 714 |
| BstMBI | GATC | 2 cut(s) | 456, 523 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstV1I | GCAGC | 1 cut(s) | 457 |
| BsuI | GTATCC | 1 cut(s) | 151 |
| BsuRI | GGCC | 2 cut(s) | 112, 166 |
| BtsCI | GGATG | 2 cut(s) | 41, 514 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| Cac8I | GCNNGC | 2 cut(s) | 74, 78 |
| Cfr13I | GGNCC | 3 cut(s) | 164, 260, 690 |
| CseI | GACGC | 1 cut(s) | 224 |
| Csp6I | GTAC | 1 cut(s) | 42 |
| CviAII | CATG | 3 cut(s) | 503, 703, 713 |
| CviQI | GTAC | 1 cut(s) | 42 |
| DdeI | CTNAG | 3 cut(s) | 333, 621, 780 |
| DpnI | GATC | 2 cut(s) | 458, 525 |
| DpnII | GATC | 2 cut(s) | 456, 523 |
| Eam1104I | CTCTTC | 2 cut(s) | 86, 413 |
| EarI | CTCTTC | 2 cut(s) | 86, 413 |
| Eco130I | CCWWGG | 1 cut(s) | 263 |
| Eco147I | AGGCCT | 1 cut(s) | 112 |
| Eco31I | GGTCTC | 1 cut(s) | 560 |
| Eco47I | GGWCC | 2 cut(s) | 260, 690 |
| Eco88I | CYCGRG | 1 cut(s) | 559 |
| EcoO109I | RGGNCCY | 1 cut(s) | 260 |
| EcoT14I | CCWWGG | 1 cut(s) | 263 |
| ErhI | CCWWGG | 1 cut(s) | 263 |
| FaeI | CATG | 3 cut(s) | 506, 706, 716 |
| FaqI | GGGAC | 1 cut(s) | 415 |
| FatI | CATG | 3 cut(s) | 502, 702, 712 |
| FauI | CCCGC | 1 cut(s) | 65 |
| FbaI | TGATCA | 1 cut(s) | 523 |
| FblI | GTMKAC | 1 cut(s) | 379 |
| Fnu4HI | GCNGC | 1 cut(s) | 471 |
| FokI | GGATG | 2 cut(s) | 48, 521 |
| Fsp4HI | GCNGC | 1 cut(s) | 471 |
| GluI | GCNGC | 1 cut(s) | 471 |
| HaeIII | GGCC | 2 cut(s) | 112, 166 |
| HapII | CCGG | 1 cut(s) | 197 |
| HgaI | GACGC | 1 cut(s) | 224 |
| Hin1II | CATG | 3 cut(s) | 506, 706, 716 |
| HindIII | AAGCTT | 1 cut(s) | 497 |
| HinfI | GANTC | 2 cut(s) | 27, 562 |
| HpaII | CCGG | 1 cut(s) | 197 |
| HphI | GGTGA | 1 cut(s) | 290 |
| Hpy166II | GTNNAC | 2 cut(s) | 380, 546 |
| Hpy188I | TCNGA | 7 cut(s) | 32, 240, 325, 334, 523, 567, 652 |
| Hpy188III | TCNNGA | 3 cut(s) | 197, 464, 559 |
| Hpy8I | GTNNAC | 2 cut(s) | 380, 546 |
| Hpy99I | CGWCG | 1 cut(s) | 240 |
| HpyCH4III | ACNGT | 1 cut(s) | 46 |
| HpyCH4IV | ACGT | 4 cut(s) | 141, 248, 404, 439 |
| HpyCH4V | TGCA | 2 cut(s) | 80, 512 |
| HpyF3I | CTNAG | 3 cut(s) | 333, 621, 780 |
| HpySE526I | ACGT | 4 cut(s) | 141, 248, 404, 439 |
| Hsp92II | CATG | 3 cut(s) | 506, 706, 716 |
| Kpn2I | TCCGGA | 1 cut(s) | 196 |
| Ksp22I | TGATCA | 1 cut(s) | 523 |
| Kzo9I | GATC | 2 cut(s) | 456, 523 |
| LmnI | GCTCC | 1 cut(s) | 427 |
| LpnPI | CCDG | 8 cut(s) | 86, 94, 165, 180, 210, 241, 449, 498 |
| Lsp1109I | GCAGC | 1 cut(s) | 457 |
| LweI | GCATC | 2 cut(s) | 499, 643 |
| MaeII | ACGT | 4 cut(s) | 141, 248, 404, 439 |
| MaeIII | GTNAC | 2 cut(s) | 131, 175 |
| MalI | GATC | 2 cut(s) | 458, 525 |
| MboI | GATC | 2 cut(s) | 456, 523 |
| MboII | GAAGA | 5 cut(s) | 103, 114, 358, 430, 638 |
| MluCI | AATT | 5 cut(s) | 19, 227, 349, 602, 695 |
| MlyI | GAGTC | 1 cut(s) | 571 |
| MmeI | TCCRAC | 4 cut(s) | 28, 68, 135, 218 |
| MnlI | CCTC | 8 cut(s) | 26, 139, 165, 193, 321, 352, 414, 460 |
| MroI | TCCGGA | 1 cut(s) | 196 |
| MroXI | GAANNNNTTC | 1 cut(s) | 350 |
| MseI | TTAA | 3 cut(s) | 230, 285, 698 |
| MslI | CAYNNNNRTG | 1 cut(s) | 507 |
| MspI | CCGG | 1 cut(s) | 197 |
| NdeII | GATC | 2 cut(s) | 456, 523 |
| NlaIII | CATG | 3 cut(s) | 506, 706, 716 |
| NlaIV | GGNNCC | 4 cut(s) | 165, 261, 599, 691 |
| NmuCI | GTSAC | 1 cut(s) | 131 |
| PceI | AGGCCT | 1 cut(s) | 112 |
| PdmI | GAANNNNTTC | 1 cut(s) | 350 |
| PfeI | GAWTC | 1 cut(s) | 27 |
| PkrI | GCNGC | 1 cut(s) | 472 |
| PleI | GAGTC | 1 cut(s) | 570 |
| PpsI | GAGTC | 1 cut(s) | 570 |
| PpuMI | RGGWCCY | 1 cut(s) | 260 |
| PshBI | ATTAAT | 1 cut(s) | 230 |
| Psp1406I | AACGTT | 1 cut(s) | 439 |
| Psp5II | RGGWCCY | 1 cut(s) | 260 |
| PspN4I | GGNNCC | 4 cut(s) | 165, 261, 599, 691 |
| PspPI | GGNCC | 3 cut(s) | 164, 260, 690 |
| PspPPI | RGGWCCY | 1 cut(s) | 260 |
| RsaI | GTAC | 1 cut(s) | 43 |
| RsaNI | GTAC | 1 cut(s) | 42 |
| RseI | CAYNNNNRTG | 1 cut(s) | 507 |
| SaqAI | TTAA | 3 cut(s) | 230, 285, 698 |
| SatI | GCNGC | 1 cut(s) | 471 |
| Sau3AI | GATC | 2 cut(s) | 456, 523 |
| Sau96I | GGNCC | 3 cut(s) | 164, 260, 690 |
| SchI | GAGTC | 1 cut(s) | 571 |
| SfaNI | GCATC | 2 cut(s) | 499, 643 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SinI | GGWCC | 2 cut(s) | 260, 690 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 507 |
| Sse9I | AATT | 5 cut(s) | 19, 227, 349, 602, 695 |
| SseBI | AGGCCT | 1 cut(s) | 112 |
| SsiI | CCGC | 3 cut(s) | 72, 318, 595 |
| SspI | AATATT | 1 cut(s) | 751 |
| StuI | AGGCCT | 1 cut(s) | 112 |
| StyI | CCWWGG | 1 cut(s) | 263 |
| TaaI | ACNGT | 1 cut(s) | 46 |
| TaiI | ACGT | 4 cut(s) | 144, 251, 407, 442 |
| TasI | AATT | 5 cut(s) | 19, 227, 349, 602, 695 |
| TfiI | GAWTC | 1 cut(s) | 27 |
| Tru1I | TTAA | 3 cut(s) | 230, 285, 698 |
| Tru9I | TTAA | 3 cut(s) | 230, 285, 698 |
| TscAI | CASTG | 1 cut(s) | 174 |
| TseFI | GTSAC | 1 cut(s) | 131 |
| TseI | GCWGC | 1 cut(s) | 470 |
| Tsp45I | GTSAC | 1 cut(s) | 131 |
| TspDTI | ATGAA | 2 cut(s) | 359, 491 |
| TspRI | CASTG | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 2 cut(s) | 260, 690 |
| VspI | ATTAAT | 1 cut(s) | 230 |
| XapI | RAATTY | 1 cut(s) | 349 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 700 |
| XmiI | GTMKAC | 1 cut(s) | 379 |
| XmnI | GAANNNNTTC | 1 cut(s) | 350 |