ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 365, 413, 467, 736, 769 |
| AclWI | GGATC | 2 cut(s) | 272, 765 |
| AcoI | YGGCCR | 1 cut(s) | 975 |
| AcsI | RAATTY | 2 cut(s) | 537, 793 |
| AcuI | CTGAAG | 1 cut(s) | 804 |
| AfaI | GTAC | 2 cut(s) | 295, 547 |
| AfeI | AGCGCT | 1 cut(s) | 523 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 162, 635 |
| AgsI | TTSAA | 5 cut(s) | 190, 325, 569, 664, 716 |
| AjiI | CACGTC | 1 cut(s) | 554 |
| AjnI | CCWGG | 1 cut(s) | 23 |
| AluBI | AGCT | 2 cut(s) | 374, 688 |
| AluI | AGCT | 2 cut(s) | 374, 688 |
| Alw21I | GWGCWC | 1 cut(s) | 883 |
| Alw26I | GTCTC | 5 cut(s) | 47, 85, 627, 668, 884 |
| AlwI | GGATC | 2 cut(s) | 272, 765 |
| Aor51HI | AGCGCT | 1 cut(s) | 523 |
| AoxI | GGCC | 5 cut(s) | 153, 239, 362, 626, 975 |
| ApeKI | GCWGC | 4 cut(s) | 371, 374, 685, 772 |
| ApoI | RAATTY | 2 cut(s) | 537, 793 |
| AspLEI | GCGC | 1 cut(s) | 524 |
| AsuC2I | CCSGG | 2 cut(s) | 943, 979 |
| AsuHPI | GGTGA | 3 cut(s) | 322, 329, 481 |
| AxyI | CCTNAGG | 1 cut(s) | 243 |
| BaeGI | GKGCMC | 1 cut(s) | 583 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 277, 309 |
| BbsI | GAAGAC | 2 cut(s) | 92, 197 |
| Bbv12I | GWGCWC | 1 cut(s) | 883 |
| BbvI | GCAGC | 4 cut(s) | 361, 383, 697, 784 |
| BccI | CCATC | 2 cut(s) | 160, 307 |
| BciT130I | CCWGG | 1 cut(s) | 25 |
| BcnI | CCSGG | 2 cut(s) | 943, 979 |
| BcoDI | GTCTC | 5 cut(s) | 47, 85, 627, 668, 884 |
| BfmI | CTRYAG | 1 cut(s) | 854 |
| BfoI | RGCGCY | 1 cut(s) | 525 |
| BisI | GCNGC | 7 cut(s) | 365, 372, 375, 686, 737, 770, 773 |
| BlpI | GCTNAGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 7 cut(s) | 366, 373, 376, 687, 738, 771, 774 |
| Bme1390I | CCNGG | 3 cut(s) | 25, 943, 979 |
| BmgBI | CACGTC | 1 cut(s) | 554 |
| BmiI | GGNNCC | 1 cut(s) | 641 |
| BmrFI | CCNGG | 3 cut(s) | 25, 943, 979 |
| BmrI | ACTGGG | 2 cut(s) | 270, 687 |
| BmsI | GCATC | 4 cut(s) | 205, 723, 827, 852 |
| BmuI | ACTGGG | 2 cut(s) | 270, 687 |
| BpiI | GAAGAC | 2 cut(s) | 92, 197 |
| BpmI | CTGGAG | 2 cut(s) | 271, 375 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 1 cut(s) | 932 |
| BpuMI | CCSGG | 2 cut(s) | 943, 979 |
| BsaI | GGTCTC | 2 cut(s) | 85, 627 |
| BsaJI | CCNNGG | 2 cut(s) | 302, 942 |
| BsaWI | WCCGGW | 2 cut(s) | 178, 886 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 463, 493 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 162, 635 |
| Bse1I | ACTGG | 2 cut(s) | 265, 682 |
| Bse21I | CCTNAGG | 1 cut(s) | 243 |
| Bse3DI | GCAATG | 1 cut(s) | 117 |
| BseBI | CCWGG | 1 cut(s) | 25 |
| BseDI | CCNNGG | 2 cut(s) | 302, 942 |
| BseGI | GGATG | 3 cut(s) | 171, 349, 955 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 162, 635 |
| BseMI | GCAATG | 1 cut(s) | 117 |
| BseMII | CTCAG | 2 cut(s) | 234, 516 |
| BseNI | ACTGG | 2 cut(s) | 265, 682 |
| BseRI | GAGGAG | 2 cut(s) | 938, 968 |
| BseSI | GKGCMC | 1 cut(s) | 583 |
| BseXI | GCAGC | 4 cut(s) | 361, 383, 697, 784 |
| BshFI | GGCC | 5 cut(s) | 155, 241, 364, 628, 977 |
| BsiHKAI | GWGCWC | 1 cut(s) | 883 |
| BsiSI | CCGG | 4 cut(s) | 179, 887, 942, 978 |
| BslFI | GGGAC | 1 cut(s) | 864 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 162, 635 |
| BsmAI | GTCTC | 5 cut(s) | 47, 85, 627, 668, 884 |
| BsmFI | GGGAC | 1 cut(s) | 864 |
| BsnI | GGCC | 5 cut(s) | 155, 241, 364, 628, 977 |
| Bso31I | GGTCTC | 2 cut(s) | 85, 627 |
| Bsp1286I | GDGCHC | 2 cut(s) | 583, 883 |
| Bsp143I | GATC | 4 cut(s) | 18, 73, 264, 757 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 525 |
| BspACI | CCGC | 5 cut(s) | 365, 413, 467, 736, 769 |
| BspANI | GGCC | 5 cut(s) | 155, 241, 364, 628, 977 |
| BspCNI | CTCAG | 2 cut(s) | 235, 517 |
| BspLI | GGNNCC | 1 cut(s) | 641 |
| BspMAI | CTGCAG | 1 cut(s) | 858 |
| BspPI | GGATC | 2 cut(s) | 272, 765 |
| BspTNI | GGTCTC | 2 cut(s) | 85, 627 |
| BsrDI | GCAATG | 1 cut(s) | 117 |
| BsrI | ACTGG | 2 cut(s) | 265, 682 |
| BssECI | CCNNGG | 2 cut(s) | 302, 942 |
| BssMI | GATC | 4 cut(s) | 18, 73, 264, 757 |
| BssT1I | CCWWGG | 1 cut(s) | 302 |
| Bst2UI | CCWGG | 1 cut(s) | 25 |
| BstC8I | GCNNGC | 1 cut(s) | 369 |
| BstDEI | CTNAG | 2 cut(s) | 243, 525 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 633 |
| BstF5I | GGATG | 3 cut(s) | 171, 349, 955 |
| BstH2I | RGCGCY | 1 cut(s) | 525 |
| BstHHI | GCGC | 1 cut(s) | 524 |
| BstKTI | GATC | 4 cut(s) | 21, 76, 267, 760 |
| BstMAI | GTCTC | 5 cut(s) | 47, 85, 627, 668, 884 |
| BstMBI | GATC | 4 cut(s) | 18, 73, 264, 757 |
| BstNI | CCWGG | 1 cut(s) | 25 |
| BstNSI | RCATGY | 2 cut(s) | 371, 722 |
| BstSCI | CCNGG | 3 cut(s) | 23, 941, 977 |
| BstSFI | CTRYAG | 1 cut(s) | 854 |
| BstSLI | GKGCMC | 1 cut(s) | 583 |
| BstV1I | GCAGC | 4 cut(s) | 361, 383, 697, 784 |
| BstV2I | GAAGAC | 2 cut(s) | 92, 197 |
| BstX2I | RGATCY | 1 cut(s) | 264 |
| BstYI | RGATCY | 1 cut(s) | 264 |
| Bsu36I | CCTNAGG | 1 cut(s) | 243 |
| BsuRI | GGCC | 5 cut(s) | 155, 241, 364, 628, 977 |
| BtrI | CACGTC | 1 cut(s) | 554 |
| BtsCI | GGATG | 3 cut(s) | 171, 349, 955 |
| Cac8I | GCNNGC | 1 cut(s) | 369 |
| CfoI | GCGC | 1 cut(s) | 524 |
| Csp6I | GTAC | 2 cut(s) | 294, 546 |
| CviAII | CATG | 3 cut(s) | 83, 368, 719 |
| CviQI | GTAC | 2 cut(s) | 294, 546 |
| DdeI | CTNAG | 2 cut(s) | 243, 525 |
| DpnI | GATC | 4 cut(s) | 20, 75, 266, 759 |
| DpnII | GATC | 4 cut(s) | 18, 73, 264, 757 |
| EaeI | YGGCCR | 1 cut(s) | 975 |
| Eco130I | CCWWGG | 1 cut(s) | 302 |
| Eco31I | GGTCTC | 2 cut(s) | 85, 627 |
| Eco47III | AGCGCT | 1 cut(s) | 523 |
| Eco57I | CTGAAG | 1 cut(s) | 804 |
| Eco81I | CCTNAGG | 1 cut(s) | 243 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 633 |
| EcoRI | GAATTC | 1 cut(s) | 793 |
| EcoRII | CCWGG | 1 cut(s) | 23 |
| EcoT14I | CCWWGG | 1 cut(s) | 302 |
| ErhI | CCWWGG | 1 cut(s) | 302 |
| FaeI | CATG | 3 cut(s) | 86, 371, 722 |
| FaqI | GGGAC | 1 cut(s) | 864 |
| FatI | CATG | 3 cut(s) | 82, 367, 718 |
| FauI | CCCGC | 1 cut(s) | 406 |
| Fnu4HI | GCNGC | 7 cut(s) | 365, 372, 375, 686, 737, 770, 773 |
| FokI | GGATG | 3 cut(s) | 178, 356, 962 |
| Fsp4HI | GCNGC | 7 cut(s) | 365, 372, 375, 686, 737, 770, 773 |
| GlaI | GCGC | 1 cut(s) | 523 |
| GluI | GCNGC | 7 cut(s) | 365, 372, 375, 686, 737, 770, 773 |
| GsuI | CTGGAG | 2 cut(s) | 271, 375 |
| HaeII | RGCGCY | 1 cut(s) | 525 |
| HaeIII | GGCC | 5 cut(s) | 155, 241, 364, 628, 977 |
| HapII | CCGG | 4 cut(s) | 179, 887, 942, 978 |
| HhaI | GCGC | 1 cut(s) | 524 |
| Hin1II | CATG | 3 cut(s) | 86, 371, 722 |
| Hin6I | GCGC | 1 cut(s) | 522 |
| HinP1I | GCGC | 1 cut(s) | 522 |
| HinfI | GANTC | 5 cut(s) | 55, 97, 140, 488, 742 |
| HpaII | CCGG | 4 cut(s) | 179, 887, 942, 978 |
| HphI | GGTGA | 3 cut(s) | 322, 329, 481 |
| Hpy166II | GTNNAC | 3 cut(s) | 46, 296, 548 |
| Hpy188I | TCNGA | 3 cut(s) | 395, 784, 792 |
| Hpy188III | TCNNGA | 6 cut(s) | 250, 341, 354, 590, 746, 965 |
| Hpy8I | GTNNAC | 3 cut(s) | 46, 296, 548 |
| Hpy99I | CGWCG | 2 cut(s) | 391, 546 |
| HpyAV | CCTTC | 3 cut(s) | 639, 807, 860 |
| HpyCH4IV | ACGT | 3 cut(s) | 389, 544, 553 |
| HpyF3I | CTNAG | 2 cut(s) | 243, 525 |
| HpySE526I | ACGT | 3 cut(s) | 389, 544, 553 |
| Hsp92II | CATG | 3 cut(s) | 86, 371, 722 |
| HspAI | GCGC | 1 cut(s) | 522 |
| Kzo9I | GATC | 4 cut(s) | 18, 73, 264, 757 |
| LmnI | GCTCC | 1 cut(s) | 382 |
| Lsp1109I | GCAGC | 4 cut(s) | 361, 383, 697, 784 |
| LweI | GCATC | 4 cut(s) | 205, 723, 827, 852 |
| MaeII | ACGT | 3 cut(s) | 389, 544, 553 |
| MaeIII | GTNAC | 1 cut(s) | 469 |
| MalI | GATC | 4 cut(s) | 20, 75, 266, 759 |
| MboI | GATC | 4 cut(s) | 18, 73, 264, 757 |
| MboII | GAAGA | 3 cut(s) | 92, 149, 202 |
| MflI | RGATCY | 1 cut(s) | 264 |
| MhlI | GDGCHC | 2 cut(s) | 583, 883 |
| MluCI | AATT | 5 cut(s) | 28, 537, 666, 793, 894 |
| MlyI | GAGTC | 3 cut(s) | 49, 106, 497 |
| MseI | TTAA | 2 cut(s) | 647, 897 |
| MslI | CAYNNNNRTG | 3 cut(s) | 12, 213, 731 |
| MspA1I | CMGCKG | 1 cut(s) | 374 |
| MspI | CCGG | 4 cut(s) | 179, 887, 942, 978 |
| MspR9I | CCNGG | 3 cut(s) | 25, 943, 979 |
| MvaI | CCWGG | 1 cut(s) | 25 |
| NciI | CCSGG | 2 cut(s) | 943, 979 |
| NdeII | GATC | 4 cut(s) | 18, 73, 264, 757 |
| NlaIII | CATG | 3 cut(s) | 86, 371, 722 |
| NlaIV | GGNNCC | 1 cut(s) | 641 |
| NmeAIII | GCCGAG | 1 cut(s) | 604 |
| NmuCI | GTSAC | 1 cut(s) | 469 |
| NspI | RCATGY | 2 cut(s) | 371, 722 |
| PaeI | GCATGC | 1 cut(s) | 371 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 550 |
| PfeI | GAWTC | 2 cut(s) | 140, 742 |
| PflFI | GACNNNGTC | 1 cut(s) | 96 |
| PkrI | GCNGC | 7 cut(s) | 366, 373, 376, 687, 738, 771, 774 |
| PleI | GAGTC | 3 cut(s) | 49, 105, 496 |
| PpsI | GAGTC | 3 cut(s) | 49, 105, 496 |
| Psp6I | CCWGG | 1 cut(s) | 23 |
| PspGI | CCWGG | 1 cut(s) | 23 |
| PspN4I | GGNNCC | 1 cut(s) | 641 |
| PstI | CTGCAG | 1 cut(s) | 858 |
| PsuI | RGATCY | 1 cut(s) | 264 |
| PsyI | GACNNNGTC | 1 cut(s) | 96 |
| PvuII | CAGCTG | 1 cut(s) | 374 |
| RsaI | GTAC | 2 cut(s) | 295, 547 |
| RsaNI | GTAC | 2 cut(s) | 294, 546 |
| RseI | CAYNNNNRTG | 3 cut(s) | 12, 213, 731 |
| SaqAI | TTAA | 2 cut(s) | 647, 897 |
| SatI | GCNGC | 7 cut(s) | 365, 372, 375, 686, 737, 770, 773 |
| Sau3AI | GATC | 4 cut(s) | 18, 73, 264, 757 |
| SchI | GAGTC | 3 cut(s) | 49, 106, 497 |
| ScrFI | CCNGG | 3 cut(s) | 25, 943, 979 |
| SduI | GDGCHC | 2 cut(s) | 583, 883 |
| SfaNI | GCATC | 4 cut(s) | 205, 723, 827, 852 |
| SfcI | CTRYAG | 1 cut(s) | 854 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 12, 213, 731 |
| SmlI | CTYRAG | 1 cut(s) | 911 |
| SmoI | CTYRAG | 1 cut(s) | 911 |
| SphI | GCATGC | 1 cut(s) | 371 |
| Sse9I | AATT | 5 cut(s) | 28, 537, 666, 793, 894 |
| SsiI | CCGC | 5 cut(s) | 365, 413, 467, 736, 769 |
| StyD4I | CCNGG | 3 cut(s) | 23, 941, 977 |
| StyI | CCWWGG | 1 cut(s) | 302 |
| TaiI | ACGT | 3 cut(s) | 392, 547, 556 |
| TaqI | TCGA | 3 cut(s) | 72, 541, 632 |
| TaqII | GACCGA | 1 cut(s) | 109 |
| TasI | AATT | 5 cut(s) | 28, 537, 666, 793, 894 |
| TauI | GCSGC | 3 cut(s) | 367, 739, 772 |
| TfiI | GAWTC | 2 cut(s) | 140, 742 |
| Tru1I | TTAA | 2 cut(s) | 647, 897 |
| Tru9I | TTAA | 2 cut(s) | 647, 897 |
| TseFI | GTSAC | 1 cut(s) | 469 |
| TseI | GCWGC | 4 cut(s) | 371, 374, 685, 772 |
| Tsp45I | GTSAC | 1 cut(s) | 469 |
| TspDTI | ATGAA | 3 cut(s) | 71, 797, 879 |
| Tth111I | GACNNNGTC | 1 cut(s) | 96 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 633 |
| XapI | RAATTY | 2 cut(s) | 537, 793 |
| XceI | RCATGY | 2 cut(s) | 371, 722 |