Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 434, 641 |
| Acc36I | ACCTGC | 2 cut(s) | 434, 641 |
| AccI | GTMKAC | 1 cut(s) | 502 |
| AccIII | TCCGGA | 1 cut(s) | 364 |
| AclWI | GGATC | 1 cut(s) | 454 |
| AcoI | YGGCCR | 1 cut(s) | 411 |
| AdeI | CACNNNGTG | 1 cut(s) | 124 |
| AfaI | GTAC | 2 cut(s) | 279, 333 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 184, 371 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 24 |
| AjnI | CCWGG | 1 cut(s) | 120 |
| Alw21I | GWGCWC | 1 cut(s) | 129 |
| Alw44I | GTGCAC | 1 cut(s) | 125 |
| AlwI | GGATC | 1 cut(s) | 454 |
| Aor13HI | TCCGGA | 1 cut(s) | 364 |
| AoxI | GGCC | 2 cut(s) | 320, 411 |
| ApaLI | GTGCAC | 1 cut(s) | 125 |
| ApeKI | GCWGC | 1 cut(s) | 563 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 492 |
| AspA2I | CCTAGG | 1 cut(s) | 463 |
| AspLEI | GCGC | 1 cut(s) | 342 |
| AspS9I | GGNCC | 1 cut(s) | 320 |
| AsuHPI | GGTGA | 2 cut(s) | 298, 458 |
| AvrII | CCTAGG | 1 cut(s) | 463 |
| BaeGI | GKGCMC | 1 cut(s) | 129 |
| BalI | TGGCCA | 1 cut(s) | 413 |
| BanII | GRGCYC | 1 cut(s) | 576 |
| BbsI | GAAGAC | 2 cut(s) | 20, 23 |
| Bbv12I | GWGCWC | 1 cut(s) | 129 |
| BbvI | GCAGC | 1 cut(s) | 575 |
| BceAI | ACGGC | 1 cut(s) | 307 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 69, 103 |
| BciT130I | CCWGG | 1 cut(s) | 122 |
| BfaI | CTAG | 2 cut(s) | 464, 661 |
| BfoI | RGCGCY | 1 cut(s) | 343 |
| BfuAI | ACCTGC | 2 cut(s) | 434, 641 |
| BisI | GCNGC | 1 cut(s) | 564 |
| BlnI | CCTAGG | 1 cut(s) | 463 |
| BlsI | GCNGC | 1 cut(s) | 565 |
| Bme1390I | CCNGG | 1 cut(s) | 122 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 24 |
| BmgT120I | GGNCC | 1 cut(s) | 320 |
| BmiI | GGNNCC | 1 cut(s) | 321 |
| BmrFI | CCNGG | 1 cut(s) | 122 |
| BmsI | GCATC | 2 cut(s) | 295, 505 |
| BoxI | GACNNNNGTC | 1 cut(s) | 421 |
| BpiI | GAAGAC | 2 cut(s) | 20, 23 |
| BpmI | CTGGAG | 1 cut(s) | 504 |
| Bsa29I | ATCGAT | 1 cut(s) | 303 |
| BsaJI | CCNNGG | 2 cut(s) | 64, 463 |
| BsaWI | WCCGGW | 1 cut(s) | 364 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 184, 371 |
| Bse3DI | GCAATG | 2 cut(s) | 151, 204 |
| BseAI | TCCGGA | 1 cut(s) | 364 |
| BseBI | CCWGG | 1 cut(s) | 122 |
| BseCI | ATCGAT | 1 cut(s) | 303 |
| BseDI | CCNNGG | 2 cut(s) | 64, 463 |
| BseGI | GGATG | 4 cut(s) | 108, 262, 361, 520 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 184, 371 |
| BseMI | GCAATG | 2 cut(s) | 151, 204 |
| BseSI | GKGCMC | 1 cut(s) | 129 |
| BseXI | GCAGC | 1 cut(s) | 575 |
| BshFI | GGCC | 2 cut(s) | 322, 413 |
| BshVI | ATCGAT | 1 cut(s) | 303 |
| BsiHKAI | GWGCWC | 1 cut(s) | 129 |
| BsiSI | CCGG | 1 cut(s) | 365 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 184, 371 |
| BsnI | GGCC | 2 cut(s) | 322, 413 |
| Bsp1286I | GDGCHC | 2 cut(s) | 129, 576 |
| Bsp13I | TCCGGA | 1 cut(s) | 364 |
| Bsp1407I | TGTACA | 1 cut(s) | 331 |
| Bsp143I | GATC | 4 cut(s) | 51, 217, 230, 459 |
| BspANI | GGCC | 2 cut(s) | 322, 413 |
| BspDI | ATCGAT | 1 cut(s) | 303 |
| BspEI | TCCGGA | 1 cut(s) | 364 |
| BspLI | GGNNCC | 1 cut(s) | 321 |
| BspMI | ACCTGC | 2 cut(s) | 434, 641 |
| BspPI | GGATC | 1 cut(s) | 454 |
| BspQI | GCTCTTC | 1 cut(s) | 252 |
| BsrDI | GCAATG | 2 cut(s) | 151, 204 |
| BsrGI | TGTACA | 1 cut(s) | 331 |
| BssECI | CCNNGG | 2 cut(s) | 64, 463 |
| BssMI | GATC | 4 cut(s) | 51, 217, 230, 459 |
| BssT1I | CCWWGG | 2 cut(s) | 64, 463 |
| Bst2UI | CCWGG | 1 cut(s) | 122 |
| Bst4CI | ACNGT | 2 cut(s) | 286, 336 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 124 |
| BstAUI | TGTACA | 1 cut(s) | 331 |
| BstDEI | CTNAG | 1 cut(s) | 140 |
| BstF5I | GGATG | 4 cut(s) | 108, 262, 361, 520 |
| BstH2I | RGCGCY | 1 cut(s) | 343 |
| BstHHI | GCGC | 1 cut(s) | 342 |
| BstKTI | GATC | 4 cut(s) | 54, 220, 233, 462 |
| BstMBI | GATC | 4 cut(s) | 51, 217, 230, 459 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 124 |
| BstNI | CCWGG | 1 cut(s) | 122 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 421 |
| BstSCI | CCNGG | 1 cut(s) | 120 |
| BstSLI | GKGCMC | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 575 |
| BstV2I | GAAGAC | 2 cut(s) | 20, 23 |
| BstX2I | RGATCY | 1 cut(s) | 459 |
| BstYI | RGATCY | 1 cut(s) | 459 |
| Bsu15I | ATCGAT | 1 cut(s) | 303 |
| BsuRI | GGCC | 2 cut(s) | 322, 413 |
| BsuTUI | ATCGAT | 1 cut(s) | 303 |
| BtsCI | GGATG | 4 cut(s) | 108, 262, 361, 520 |
| BtsIMutI | CAGTG | 2 cut(s) | 341, 383 |
| BveI | ACCTGC | 2 cut(s) | 434, 641 |
| CfoI | GCGC | 1 cut(s) | 342 |
| Cfr13I | GGNCC | 1 cut(s) | 320 |
| ClaI | ATCGAT | 1 cut(s) | 303 |
| CseI | GACGC | 1 cut(s) | 599 |
| CsiI | ACCWGGT | 1 cut(s) | 120 |
| Csp6I | GTAC | 2 cut(s) | 278, 332 |
| CviAII | CATG | 3 cut(s) | 40, 92, 637 |
| CviJI | RGCY | 8 cut(s) | 188, 196, 245, 322, 413, 530, 574, 641 |
| CviKI_1 | RGCY | 8 cut(s) | 188, 196, 245, 322, 413, 530, 574, 641 |
| CviQI | GTAC | 2 cut(s) | 278, 332 |
| DdeI | CTNAG | 1 cut(s) | 140 |
| DpnI | GATC | 4 cut(s) | 53, 219, 232, 461 |
| DpnII | GATC | 4 cut(s) | 51, 217, 230, 459 |
| DraIII | CACNNNGTG | 1 cut(s) | 124 |
| DriI | GACNNNNNGTC | 1 cut(s) | 24 |
| EaeI | YGGCCR | 1 cut(s) | 411 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 24 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| Eco130I | CCWWGG | 2 cut(s) | 64, 463 |
| Eco24I | GRGCYC | 1 cut(s) | 576 |
| EcoRII | CCWGG | 1 cut(s) | 120 |
| EcoT14I | CCWWGG | 2 cut(s) | 64, 463 |
| EcoT38I | GRGCYC | 1 cut(s) | 576 |
| ErhI | CCWWGG | 2 cut(s) | 64, 463 |
| FaeI | CATG | 3 cut(s) | 43, 95, 640 |
| FaiI | YATR | 8 cut(s) | 41, 71, 93, 185, 253, 314, 357, 638 |
| FatI | CATG | 3 cut(s) | 39, 91, 636 |
| FblI | GTMKAC | 1 cut(s) | 502 |
| Fnu4HI | GCNGC | 1 cut(s) | 564 |
| FokI | GGATG | 4 cut(s) | 95, 269, 348, 527 |
| FriOI | GRGCYC | 1 cut(s) | 576 |
| Fsp4HI | GCNGC | 1 cut(s) | 564 |
| FspBI | CTAG | 2 cut(s) | 464, 661 |
| GlaI | GCGC | 1 cut(s) | 341 |
| GluI | GCNGC | 1 cut(s) | 564 |
| GsuI | CTGGAG | 1 cut(s) | 504 |
| HaeII | RGCGCY | 1 cut(s) | 343 |
| HaeIII | GGCC | 2 cut(s) | 322, 413 |
| HapII | CCGG | 1 cut(s) | 365 |
| HgaI | GACGC | 1 cut(s) | 599 |
| HhaI | GCGC | 1 cut(s) | 342 |
| Hin1II | CATG | 3 cut(s) | 43, 95, 640 |
| Hin6I | GCGC | 1 cut(s) | 340 |
| HinP1I | GCGC | 1 cut(s) | 340 |
| HinfI | GANTC | 6 cut(s) | 76, 260, 394, 493, 499, 655 |
| HpaII | CCGG | 1 cut(s) | 365 |
| HphI | GGTGA | 2 cut(s) | 298, 458 |
| Hpy166II | GTNNAC | 3 cut(s) | 127, 289, 503 |
| Hpy188I | TCNGA | 3 cut(s) | 328, 427, 498 |
| Hpy188III | TCNNGA | 6 cut(s) | 49, 55, 112, 365, 483, 611 |
| Hpy8I | GTNNAC | 3 cut(s) | 127, 289, 503 |
| Hpy99I | CGWCG | 1 cut(s) | 427 |
| HpyAV | CCTTC | 1 cut(s) | 310 |
| HpyCH4III | ACNGT | 2 cut(s) | 286, 336 |
| HpyCH4IV | ACGT | 3 cut(s) | 20, 418, 607 |
| HpyCH4V | TGCA | 3 cut(s) | 127, 156, 636 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 124 |
| HpyF3I | CTNAG | 1 cut(s) | 140 |
| HpySE526I | ACGT | 3 cut(s) | 20, 418, 607 |
| Hsp92II | CATG | 3 cut(s) | 43, 95, 640 |
| HspAI | GCGC | 1 cut(s) | 340 |
| Kpn2I | TCCGGA | 1 cut(s) | 364 |
| Kzo9I | GATC | 4 cut(s) | 51, 217, 230, 459 |
| LguI | GCTCTTC | 1 cut(s) | 252 |
| Lsp1109I | GCAGC | 1 cut(s) | 575 |
| LweI | GCATC | 2 cut(s) | 295, 505 |
| MabI | ACCWGGT | 1 cut(s) | 120 |
| MaeI | CTAG | 2 cut(s) | 464, 661 |
| MaeII | ACGT | 3 cut(s) | 20, 418, 607 |
| MaeIII | GTNAC | 3 cut(s) | 34, 468, 587 |
| MalI | GATC | 4 cut(s) | 53, 219, 232, 461 |
| MboI | GATC | 4 cut(s) | 51, 217, 230, 459 |
| MboII | GAAGA | 3 cut(s) | 20, 28, 239 |
| MflI | RGATCY | 1 cut(s) | 459 |
| MhlI | GDGCHC | 2 cut(s) | 129, 576 |
| MlsI | TGGCCA | 1 cut(s) | 413 |
| MluCI | AATT | 1 cut(s) | 58 |
| MluNI | TGGCCA | 1 cut(s) | 413 |
| MlyI | GAGTC | 1 cut(s) | 508 |
| MmeI | TCCRAC | 1 cut(s) | 405 |
| MnlI | CCTC | 2 cut(s) | 188, 562 |
| Mox20I | TGGCCA | 1 cut(s) | 413 |
| MroI | TCCGGA | 1 cut(s) | 364 |
| MroXI | GAANNNNTTC | 1 cut(s) | 492 |
| MscI | TGGCCA | 1 cut(s) | 413 |
| MseI | TTAA | 1 cut(s) | 453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 635 |
| Msp20I | TGGCCA | 1 cut(s) | 413 |
| MspI | CCGG | 1 cut(s) | 365 |
| MspR9I | CCNGG | 1 cut(s) | 122 |
| MvaI | CCWGG | 1 cut(s) | 122 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 124 |
| NdeII | GATC | 4 cut(s) | 51, 217, 230, 459 |
| NlaIII | CATG | 3 cut(s) | 43, 95, 640 |
| NlaIV | GGNNCC | 1 cut(s) | 321 |
| NmuCI | GTSAC | 2 cut(s) | 34, 587 |
| PaqCI | CACCTGC | 2 cut(s) | 434, 641 |
| PciSI | GCTCTTC | 1 cut(s) | 252 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 226 |
| PdmI | GAANNNNTTC | 1 cut(s) | 492 |
| PfeI | GAWTC | 5 cut(s) | 76, 260, 394, 493, 655 |
| PkrI | GCNGC | 1 cut(s) | 565 |
| PleI | GAGTC | 1 cut(s) | 507 |
| PpsI | GAGTC | 1 cut(s) | 507 |
| PshAI | GACNNNNGTC | 1 cut(s) | 421 |
| Psp6I | CCWGG | 1 cut(s) | 120 |
| PspGI | CCWGG | 1 cut(s) | 120 |
| PspN4I | GGNNCC | 1 cut(s) | 321 |
| PspPI | GGNCC | 1 cut(s) | 320 |
| PsuI | RGATCY | 1 cut(s) | 459 |
| RsaI | GTAC | 2 cut(s) | 279, 333 |
| RsaNI | GTAC | 2 cut(s) | 278, 332 |
| RseI | CAYNNNNRTG | 1 cut(s) | 635 |
| SapI | GCTCTTC | 1 cut(s) | 252 |
| SaqAI | TTAA | 1 cut(s) | 453 |
| SatI | GCNGC | 1 cut(s) | 564 |
| Sau3AI | GATC | 4 cut(s) | 51, 217, 230, 459 |
| Sau96I | GGNCC | 1 cut(s) | 320 |
| SchI | GAGTC | 1 cut(s) | 508 |
| ScrFI | CCNGG | 1 cut(s) | 122 |
| SduI | GDGCHC | 2 cut(s) | 129, 576 |
| SetI | ASST | 7 cut(s) | 23, 70, 126, 421, 448, 610, 635 |
| SexAI | ACCWGGT | 1 cut(s) | 120 |
| SfaNI | GCATC | 2 cut(s) | 295, 505 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 635 |
| Sse9I | AATT | 1 cut(s) | 58 |
| SspMI | CTAG | 2 cut(s) | 464, 661 |
| StyD4I | CCNGG | 1 cut(s) | 120 |
| StyI | CCWWGG | 2 cut(s) | 64, 463 |
| TaaI | ACNGT | 2 cut(s) | 286, 336 |
| TaiI | ACGT | 3 cut(s) | 23, 421, 610 |
| TaqI | TCGA | 2 cut(s) | 79, 303 |
| TasI | AATT | 1 cut(s) | 58 |
| TatI | WGTACW | 1 cut(s) | 331 |
| TfiI | GAWTC | 5 cut(s) | 76, 260, 394, 493, 655 |
| Tru1I | TTAA | 1 cut(s) | 453 |
| Tru9I | TTAA | 1 cut(s) | 453 |
| TscAI | CASTG | 2 cut(s) | 341, 383 |
| TseFI | GTSAC | 2 cut(s) | 34, 587 |
| TseI | GCWGC | 1 cut(s) | 563 |
| Tsp45I | GTSAC | 2 cut(s) | 34, 587 |
| TspDTI | ATGAA | 3 cut(s) | 56, 289, 329 |
| TspGWI | ACGGA | 1 cut(s) | 505 |
| TspRI | CASTG | 2 cut(s) | 341, 383 |
| VneI | GTGCAC | 1 cut(s) | 125 |
| XmaJI | CCTAGG | 1 cut(s) | 463 |
| XmiI | GTMKAC | 1 cut(s) | 502 |
| XmnI | GAANNNNTTC | 1 cut(s) | 492 |
| XspI | CTAG | 2 cut(s) | 464, 661 |