ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 5 |
| AclWI | GGATC | 2 cut(s) | 282, 525 |
| AcoI | YGGCCR | 1 cut(s) | 577 |
| AcsI | RAATTY | 1 cut(s) | 599 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 192, 502 |
| AgeI | ACCGGT | 1 cut(s) | 350 |
| AgsI | TTSAA | 3 cut(s) | 146, 460, 595 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 7, 39 |
| AluBI | AGCT | 2 cut(s) | 425, 466 |
| AluI | AGCT | 2 cut(s) | 425, 466 |
| Alw26I | GTCTC | 1 cut(s) | 115 |
| AlwI | GGATC | 2 cut(s) | 282, 525 |
| AoxI | GGCC | 3 cut(s) | 395, 493, 577 |
| ApeKI | GCWGC | 2 cut(s) | 223, 545 |
| ApoI | RAATTY | 1 cut(s) | 599 |
| AseI | ATTAAT | 1 cut(s) | 405 |
| AsiGI | ACCGGT | 1 cut(s) | 350 |
| AspA2I | CCTAGG | 1 cut(s) | 500 |
| AspLEI | GCGC | 1 cut(s) | 178 |
| AspS9I | GGNCC | 3 cut(s) | 109, 396, 494 |
| AsuHPI | GGTGA | 1 cut(s) | 340 |
| AvaII | GGWCC | 1 cut(s) | 109 |
| AvrII | CCTAGG | 1 cut(s) | 500 |
| BbvI | GCAGC | 2 cut(s) | 235, 532 |
| BccI | CCATC | 1 cut(s) | 22 |
| BceAI | ACGGC | 1 cut(s) | 564 |
| BclI | TGATCA | 1 cut(s) | 168 |
| BcoDI | GTCTC | 1 cut(s) | 115 |
| BfaI | CTAG | 4 cut(s) | 152, 285, 372, 501 |
| BglII | AGATCT | 1 cut(s) | 281 |
| BisI | GCNGC | 2 cut(s) | 224, 546 |
| BlnI | CCTAGG | 1 cut(s) | 500 |
| BlsI | GCNGC | 2 cut(s) | 225, 547 |
| Bme18I | GGWCC | 1 cut(s) | 109 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 396, 494 |
| BmiI | GGNNCC | 1 cut(s) | 513 |
| BmrI | ACTGGG | 1 cut(s) | 460 |
| BmsI | GCATC | 1 cut(s) | 239 |
| BmuI | ACTGGG | 1 cut(s) | 460 |
| Bpu10I | CCTNAGC | 1 cut(s) | 412 |
| BsaI | GGTCTC | 1 cut(s) | 115 |
| BsaJI | CCNNGG | 3 cut(s) | 437, 500, 537 |
| BsaWI | WCCGGW | 1 cut(s) | 350 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 503, 533 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 192, 502 |
| Bse118I | RCCGGY | 1 cut(s) | 350 |
| Bse1I | ACTGG | 1 cut(s) | 455 |
| Bse3DI | GCAATG | 1 cut(s) | 245 |
| BseDI | CCNNGG | 3 cut(s) | 437, 500, 537 |
| BseGI | GGATG | 2 cut(s) | 33, 182 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 192, 502 |
| BseMI | GCAATG | 1 cut(s) | 245 |
| BseMII | CTCAG | 2 cut(s) | 248, 292 |
| BseNI | ACTGG | 1 cut(s) | 455 |
| BseXI | GCAGC | 2 cut(s) | 235, 532 |
| BshFI | GGCC | 3 cut(s) | 397, 495, 579 |
| BshTI | ACCGGT | 1 cut(s) | 350 |
| BsiSI | CCGG | 1 cut(s) | 351 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 192, 502 |
| BsmAI | GTCTC | 1 cut(s) | 115 |
| BsnI | GGCC | 3 cut(s) | 397, 495, 579 |
| Bso31I | GGTCTC | 1 cut(s) | 115 |
| Bsp143I | GATC | 4 cut(s) | 168, 274, 281, 530 |
| Bsp19I | CCATGG | 1 cut(s) | 537 |
| BspACI | CCGC | 1 cut(s) | 5 |
| BspANI | GGCC | 3 cut(s) | 397, 495, 579 |
| BspCNI | CTCAG | 2 cut(s) | 247, 291 |
| BspLI | GGNNCC | 1 cut(s) | 513 |
| BspPI | GGATC | 2 cut(s) | 282, 525 |
| BspTNI | GGTCTC | 1 cut(s) | 115 |
| BsrDI | GCAATG | 1 cut(s) | 245 |
| BsrFI | RCCGGY | 1 cut(s) | 350 |
| BsrI | ACTGG | 1 cut(s) | 455 |
| BssAI | RCCGGY | 1 cut(s) | 350 |
| BssECI | CCNNGG | 3 cut(s) | 437, 500, 537 |
| BssMI | GATC | 4 cut(s) | 168, 274, 281, 530 |
| BssT1I | CCWWGG | 3 cut(s) | 437, 500, 537 |
| Bst6I | CTCTTC | 1 cut(s) | 372 |
| BstC8I | GCNNGC | 2 cut(s) | 228, 427 |
| BstDEI | CTNAG | 4 cut(s) | 117, 234, 278, 412 |
| BstDSI | CCRYGG | 1 cut(s) | 537 |
| BstF5I | GGATG | 2 cut(s) | 33, 182 |
| BstHHI | GCGC | 1 cut(s) | 178 |
| BstKTI | GATC | 4 cut(s) | 171, 277, 284, 533 |
| BstMAI | GTCTC | 1 cut(s) | 115 |
| BstMBI | GATC | 4 cut(s) | 168, 274, 281, 530 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 422 |
| BstV1I | GCAGC | 2 cut(s) | 235, 532 |
| BstX2I | RGATCY | 3 cut(s) | 274, 281, 530 |
| BstYI | RGATCY | 3 cut(s) | 274, 281, 530 |
| BsuRI | GGCC | 3 cut(s) | 397, 495, 579 |
| BtgI | CCRYGG | 1 cut(s) | 537 |
| BtsCI | GGATG | 2 cut(s) | 33, 182 |
| Cac8I | GCNNGC | 2 cut(s) | 228, 427 |
| CfoI | GCGC | 1 cut(s) | 178 |
| Cfr10I | RCCGGY | 1 cut(s) | 350 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 396, 494 |
| CseI | GACGC | 1 cut(s) | 314 |
| CspAI | ACCGGT | 1 cut(s) | 350 |
| CviAII | CATG | 5 cut(s) | 64, 113, 269, 507, 538 |
| CviJI | RGCY | 7 cut(s) | 397, 425, 466, 495, 514, 545, 579 |
| CviKI_1 | RGCY | 7 cut(s) | 397, 425, 466, 495, 514, 545, 579 |
| DdeI | CTNAG | 4 cut(s) | 117, 234, 278, 412 |
| DpnI | GATC | 4 cut(s) | 170, 276, 283, 532 |
| DpnII | GATC | 4 cut(s) | 168, 274, 281, 530 |
| EaeI | YGGCCR | 1 cut(s) | 577 |
| Eam1104I | CTCTTC | 1 cut(s) | 372 |
| EarI | CTCTTC | 1 cut(s) | 372 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 3 cut(s) | 437, 500, 537 |
| Eco31I | GGTCTC | 1 cut(s) | 115 |
| Eco47I | GGWCC | 1 cut(s) | 109 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| EcoT14I | CCWWGG | 3 cut(s) | 437, 500, 537 |
| ErhI | CCWWGG | 3 cut(s) | 437, 500, 537 |
| FaeI | CATG | 5 cut(s) | 67, 116, 272, 510, 541 |
| FatI | CATG | 5 cut(s) | 63, 112, 268, 506, 537 |
| FbaI | TGATCA | 1 cut(s) | 168 |
| Fnu4HI | GCNGC | 2 cut(s) | 224, 546 |
| FokI | GGATG | 2 cut(s) | 40, 169 |
| Fsp4HI | GCNGC | 2 cut(s) | 224, 546 |
| FspBI | CTAG | 4 cut(s) | 152, 285, 372, 501 |
| GlaI | GCGC | 1 cut(s) | 177 |
| GluI | GCNGC | 2 cut(s) | 224, 546 |
| HaeIII | GGCC | 3 cut(s) | 397, 495, 579 |
| HapII | CCGG | 1 cut(s) | 351 |
| HgaI | GACGC | 1 cut(s) | 314 |
| HhaI | GCGC | 1 cut(s) | 178 |
| Hin1II | CATG | 5 cut(s) | 67, 116, 272, 510, 541 |
| Hin6I | GCGC | 1 cut(s) | 176 |
| HinP1I | GCGC | 1 cut(s) | 176 |
| HincII | GTYRAC | 1 cut(s) | 76 |
| HindII | GTYRAC | 1 cut(s) | 76 |
| HindIII | AAGCTT | 1 cut(s) | 423 |
| HpaI | GTTAAC | 1 cut(s) | 76 |
| HpaII | CCGG | 1 cut(s) | 351 |
| HphI | GGTGA | 1 cut(s) | 340 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 291 |
| Hpy188I | TCNGA | 1 cut(s) | 281 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 291 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 2 cut(s) | 245, 429 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 422 |
| HpyF3I | CTNAG | 4 cut(s) | 117, 234, 278, 412 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| Hsp92II | CATG | 5 cut(s) | 67, 116, 272, 510, 541 |
| HspAI | GCGC | 1 cut(s) | 176 |
| Ksp22I | TGATCA | 1 cut(s) | 168 |
| KspAI | GTTAAC | 1 cut(s) | 76 |
| Kzo9I | GATC | 4 cut(s) | 168, 274, 281, 530 |
| LmnI | GCTCC | 1 cut(s) | 511 |
| LpnPI | CCDG | 7 cut(s) | 176, 212, 221, 364, 436, 474, 534 |
| Lsp1109I | GCAGC | 2 cut(s) | 235, 532 |
| LweI | GCATC | 1 cut(s) | 239 |
| MaeI | CTAG | 4 cut(s) | 152, 285, 372, 501 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MalI | GATC | 4 cut(s) | 170, 276, 283, 532 |
| MboI | GATC | 4 cut(s) | 168, 274, 281, 530 |
| MboII | GAAGA | 2 cut(s) | 127, 389 |
| MflI | RGATCY | 3 cut(s) | 274, 281, 530 |
| MluCI | AATT | 2 cut(s) | 46, 599 |
| MnlI | CCTC | 5 cut(s) | 89, 140, 313, 507, 535 |
| MseI | TTAA | 4 cut(s) | 42, 75, 405, 443 |
| MslI | CAYNNNNRTG | 1 cut(s) | 250 |
| MspI | CCGG | 1 cut(s) | 351 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 422 |
| NcoI | CCATGG | 1 cut(s) | 537 |
| NdeII | GATC | 4 cut(s) | 168, 274, 281, 530 |
| NlaIII | CATG | 5 cut(s) | 67, 116, 272, 510, 541 |
| NlaIV | GGNNCC | 1 cut(s) | 513 |
| PinAI | ACCGGT | 1 cut(s) | 350 |
| PkrI | GCNGC | 2 cut(s) | 225, 547 |
| PshBI | ATTAAT | 1 cut(s) | 405 |
| PspN4I | GGNNCC | 1 cut(s) | 513 |
| PspPI | GGNCC | 3 cut(s) | 109, 396, 494 |
| PsuI | RGATCY | 3 cut(s) | 274, 281, 530 |
| RseI | CAYNNNNRTG | 1 cut(s) | 250 |
| SaqAI | TTAA | 4 cut(s) | 42, 75, 405, 443 |
| SatI | GCNGC | 2 cut(s) | 224, 546 |
| Sau3AI | GATC | 4 cut(s) | 168, 274, 281, 530 |
| Sau96I | GGNCC | 3 cut(s) | 109, 396, 494 |
| SfaNI | GCATC | 1 cut(s) | 239 |
| SinI | GGWCC | 1 cut(s) | 109 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 250 |
| Sse9I | AATT | 2 cut(s) | 46, 599 |
| SsiI | CCGC | 1 cut(s) | 5 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 4 cut(s) | 152, 285, 372, 501 |
| StyI | CCWWGG | 3 cut(s) | 437, 500, 537 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TasI | AATT | 2 cut(s) | 46, 599 |
| Tru1I | TTAA | 4 cut(s) | 42, 75, 405, 443 |
| Tru9I | TTAA | 4 cut(s) | 42, 75, 405, 443 |
| TseI | GCWGC | 2 cut(s) | 223, 545 |
| TspDTI | ATGAA | 2 cut(s) | 344, 348 |
| VpaK11BI | GGWCC | 1 cut(s) | 109 |
| VspI | ATTAAT | 1 cut(s) | 405 |
| XapI | RAATTY | 1 cut(s) | 599 |
| XmaJI | CCTAGG | 1 cut(s) | 500 |
| XspI | CTAG | 4 cut(s) | 152, 285, 372, 501 |