Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 164 |
| AbsI | CCTCGAGG | 1 cut(s) | 266 |
| Acc16I | TGCGCA | 1 cut(s) | 291 |
| Acc36I | ACCTGC | 1 cut(s) | 269 |
| AccII | CGCG | 1 cut(s) | 9 |
| AclWI | GGATC | 1 cut(s) | 338 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 332 |
| AgsI | TTSAA | 2 cut(s) | 131, 332 |
| AjnI | CCWGG | 1 cut(s) | 85 |
| AluBI | AGCT | 4 cut(s) | 71, 172, 317, 375 |
| AluI | AGCT | 4 cut(s) | 71, 172, 317, 375 |
| Alw21I | GWGCWC | 1 cut(s) | 365 |
| AlwI | GGATC | 1 cut(s) | 338 |
| Ama87I | CYCGRG | 1 cut(s) | 266 |
| ApeKI | GCWGC | 1 cut(s) | 203 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 169, 201 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 72 |
| AspLEI | GCGC | 3 cut(s) | 9, 11, 292 |
| AspS9I | GGNCC | 1 cut(s) | 185 |
| AsuII | TTCGAA | 1 cut(s) | 175 |
| AvaI | CYCGRG | 1 cut(s) | 266 |
| AvaII | GGWCC | 1 cut(s) | 185 |
| Bbv12I | GWGCWC | 1 cut(s) | 365 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BciT130I | CCWGG | 1 cut(s) | 87 |
| BfaI | CTAG | 3 cut(s) | 21, 219, 372 |
| BfuAI | ACCTGC | 1 cut(s) | 269 |
| BisI | GCNGC | 1 cut(s) | 204 |
| BlsI | GCNGC | 1 cut(s) | 205 |
| Bme1390I | CCNGG | 1 cut(s) | 87 |
| Bme18I | GGWCC | 1 cut(s) | 185 |
| BmeT110I | CYCGRG | 1 cut(s) | 266 |
| BmgT120I | GGNCC | 1 cut(s) | 185 |
| BmrFI | CCNGG | 1 cut(s) | 87 |
| BmsI | GCATC | 2 cut(s) | 89, 301 |
| Bpu14I | TTCGAA | 1 cut(s) | 175 |
| BpuEI | CTTGAG | 1 cut(s) | 333 |
| BsaJI | CCNNGG | 2 cut(s) | 63, 85 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 332 |
| Bse1I | ACTGG | 2 cut(s) | 56, 249 |
| BseBI | CCWGG | 1 cut(s) | 87 |
| BseDI | CCNNGG | 2 cut(s) | 63, 85 |
| BseGI | GGATG | 3 cut(s) | 104, 160, 292 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 332 |
| BseNI | ACTGG | 2 cut(s) | 56, 249 |
| BsePI | GCGCGC | 1 cut(s) | 7 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| Bsh1236I | CGCG | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 365 |
| BsiHKCI | CYCGRG | 1 cut(s) | 266 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 332 |
| BsmI | GAATGC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 266 |
| Bsp119I | TTCGAA | 1 cut(s) | 175 |
| Bsp1286I | GDGCHC | 1 cut(s) | 365 |
| Bsp143I | GATC | 1 cut(s) | 343 |
| BspFNI | CGCG | 1 cut(s) | 9 |
| BspMI | ACCTGC | 1 cut(s) | 269 |
| BspPI | GGATC | 1 cut(s) | 338 |
| BspQI | GCTCTTC | 1 cut(s) | 78 |
| BspT104I | TTCGAA | 1 cut(s) | 175 |
| BsrI | ACTGG | 2 cut(s) | 56, 249 |
| BssECI | CCNNGG | 2 cut(s) | 63, 85 |
| BssHII | GCGCGC | 1 cut(s) | 7 |
| BssMI | GATC | 1 cut(s) | 343 |
| BssT1I | CCWWGG | 1 cut(s) | 63 |
| Bst2UI | CCWGG | 1 cut(s) | 87 |
| Bst6I | CTCTTC | 1 cut(s) | 78 |
| BstBI | TTCGAA | 1 cut(s) | 175 |
| BstC8I | GCNNGC | 2 cut(s) | 9, 319 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 330 |
| BstF5I | GGATG | 3 cut(s) | 104, 160, 292 |
| BstFNI | CGCG | 1 cut(s) | 9 |
| BstHHI | GCGC | 3 cut(s) | 9, 11, 292 |
| BstKTI | GATC | 1 cut(s) | 346 |
| BstMBI | GATC | 1 cut(s) | 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstNI | CCWGG | 1 cut(s) | 87 |
| BstSCI | CCNGG | 1 cut(s) | 85 |
| BstUI | CGCG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| BtsCI | GGATG | 3 cut(s) | 104, 160, 292 |
| BtsIMutI | CAGTG | 2 cut(s) | 242, 363 |
| BveI | ACCTGC | 1 cut(s) | 269 |
| Cac8I | GCNNGC | 2 cut(s) | 9, 319 |
| CfoI | GCGC | 3 cut(s) | 9, 11, 292 |
| Cfr13I | GGNCC | 1 cut(s) | 185 |
| CseI | GACGC | 1 cut(s) | 209 |
| CviAII | CATG | 1 cut(s) | 233 |
| CviJI | RGCY | 7 cut(s) | 24, 71, 84, 140, 172, 317, 375 |
| CviKI_1 | RGCY | 7 cut(s) | 24, 71, 84, 140, 172, 317, 375 |
| DpnI | GATC | 1 cut(s) | 345 |
| DpnII | GATC | 1 cut(s) | 343 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 164 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 164 |
| Eam1104I | CTCTTC | 1 cut(s) | 78 |
| EarI | CTCTTC | 1 cut(s) | 78 |
| Eco130I | CCWWGG | 1 cut(s) | 63 |
| Eco47I | GGWCC | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 266 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 330 |
| EcoRII | CCWGG | 1 cut(s) | 85 |
| EcoT14I | CCWWGG | 1 cut(s) | 63 |
| EcoT22I | ATGCAT | 1 cut(s) | 104 |
| ErhI | CCWWGG | 1 cut(s) | 63 |
| FaeI | CATG | 1 cut(s) | 236 |
| FaiI | YATR | 6 cut(s) | 104, 106, 183, 195, 234, 254 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 324, 356 |
| FatI | CATG | 1 cut(s) | 232 |
| FauNDI | CATATG | 1 cut(s) | 104 |
| Fnu4HI | GCNGC | 1 cut(s) | 204 |
| FokI | GGATG | 3 cut(s) | 111, 167, 279 |
| Fsp4HI | GCNGC | 1 cut(s) | 204 |
| FspAI | RTGCGCAY | 1 cut(s) | 291 |
| FspBI | CTAG | 3 cut(s) | 21, 219, 372 |
| FspI | TGCGCA | 1 cut(s) | 291 |
| GlaI | GCGC | 3 cut(s) | 8, 10, 291 |
| GluI | GCNGC | 1 cut(s) | 204 |
| HgaI | GACGC | 1 cut(s) | 209 |
| HhaI | GCGC | 3 cut(s) | 9, 11, 292 |
| Hin1II | CATG | 1 cut(s) | 236 |
| Hin6I | GCGC | 3 cut(s) | 7, 9, 290 |
| HinP1I | GCGC | 3 cut(s) | 7, 9, 290 |
| HincII | GTYRAC | 1 cut(s) | 274 |
| HindII | GTYRAC | 1 cut(s) | 274 |
| HindIII | AAGCTT | 1 cut(s) | 170 |
| HinfI | GANTC | 3 cut(s) | 239, 248, 337 |
| Hpy166II | GTNNAC | 1 cut(s) | 274 |
| Hpy188I | TCNGA | 1 cut(s) | 40 |
| Hpy188III | TCNNGA | 1 cut(s) | 341 |
| Hpy8I | GTNNAC | 1 cut(s) | 274 |
| HpyAV | CCTTC | 1 cut(s) | 145 |
| HpyCH4V | TGCA | 2 cut(s) | 102, 206 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| Hsp92II | CATG | 1 cut(s) | 236 |
| HspAI | GCGC | 3 cut(s) | 7, 9, 290 |
| Kzo9I | GATC | 1 cut(s) | 343 |
| LguI | GCTCTTC | 1 cut(s) | 78 |
| LmnI | GCTCC | 2 cut(s) | 267, 360 |
| LpnPI | CCDG | 7 cut(s) | 69, 72, 81, 99, 127, 230, 264 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| LweI | GCATC | 2 cut(s) | 89, 301 |
| MaeI | CTAG | 3 cut(s) | 21, 219, 372 |
| MalI | GATC | 1 cut(s) | 345 |
| MboI | GATC | 1 cut(s) | 343 |
| MboII | GAAGA | 2 cut(s) | 65, 189 |
| MhlI | GDGCHC | 1 cut(s) | 365 |
| MluCI | AATT | 1 cut(s) | 355 |
| MmeI | TCCRAC | 1 cut(s) | 263 |
| MnlI | CCTC | 4 cut(s) | 170, 262, 275, 357 |
| Mph1103I | ATGCAT | 1 cut(s) | 104 |
| MroXI | GAANNNNTTC | 1 cut(s) | 72 |
| MspR9I | CCNGG | 1 cut(s) | 87 |
| Mva1269I | GAATGC | 1 cut(s) | 292 |
| MvaI | CCWGG | 1 cut(s) | 87 |
| MvnI | CGCG | 1 cut(s) | 9 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NdeI | CATATG | 1 cut(s) | 104 |
| NdeII | GATC | 1 cut(s) | 343 |
| NlaIII | CATG | 1 cut(s) | 236 |
| NsbI | TGCGCA | 1 cut(s) | 291 |
| NsiI | ATGCAT | 1 cut(s) | 104 |
| NspV | TTCGAA | 1 cut(s) | 175 |
| PaeR7I | CTCGAG | 1 cut(s) | 266 |
| PauI | GCGCGC | 1 cut(s) | 7 |
| PciSI | GCTCTTC | 1 cut(s) | 78 |
| PctI | GAATGC | 1 cut(s) | 292 |
| PdmI | GAANNNNTTC | 1 cut(s) | 72 |
| PfeI | GAWTC | 3 cut(s) | 239, 248, 337 |
| PkrI | GCNGC | 1 cut(s) | 205 |
| Psp6I | CCWGG | 1 cut(s) | 85 |
| PspGI | CCWGG | 1 cut(s) | 85 |
| PspPI | GGNCC | 1 cut(s) | 185 |
| PspXI | VCTCGAGB | 1 cut(s) | 266 |
| PteI | GCGCGC | 1 cut(s) | 7 |
| SapI | GCTCTTC | 1 cut(s) | 78 |
| SatI | GCNGC | 1 cut(s) | 204 |
| Sau3AI | GATC | 1 cut(s) | 343 |
| Sau96I | GGNCC | 1 cut(s) | 185 |
| ScrFI | CCNGG | 1 cut(s) | 87 |
| SduI | GDGCHC | 1 cut(s) | 365 |
| SetI | ASST | 8 cut(s) | 73, 162, 174, 273, 283, 319, 373, 377 |
| SfaNI | GCATC | 2 cut(s) | 89, 301 |
| Sfr274I | CTCGAG | 1 cut(s) | 266 |
| SfuI | TTCGAA | 1 cut(s) | 175 |
| SinI | GGWCC | 1 cut(s) | 185 |
| SlaI | CTCGAG | 1 cut(s) | 266 |
| SmlI | CTYRAG | 2 cut(s) | 266, 348 |
| SmoI | CTYRAG | 2 cut(s) | 266, 348 |
| Sse9I | AATT | 1 cut(s) | 355 |
| SspMI | CTAG | 3 cut(s) | 21, 219, 372 |
| StyD4I | CCNGG | 1 cut(s) | 85 |
| StyI | CCWWGG | 1 cut(s) | 63 |
| TaqI | TCGA | 3 cut(s) | 13, 175, 267 |
| TasI | AATT | 1 cut(s) | 355 |
| TfiI | GAWTC | 3 cut(s) | 239, 248, 337 |
| TscAI | CASTG | 2 cut(s) | 249, 370 |
| TseI | GCWGC | 1 cut(s) | 203 |
| TspDTI | ATGAA | 1 cut(s) | 138 |
| TspRI | CASTG | 2 cut(s) | 249, 370 |
| VpaK11BI | GGWCC | 1 cut(s) | 185 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 330 |
| XhoI | CTCGAG | 1 cut(s) | 266 |
| XmnI | GAANNNNTTC | 1 cut(s) | 72 |
| XspI | CTAG | 3 cut(s) | 21, 219, 372 |
| Zsp2I | ATGCAT | 1 cut(s) | 104 |