ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 198 |
| AccIII | TCCGGA | 1 cut(s) | 559 |
| AclWI | GGATC | 1 cut(s) | 249 |
| AcuI | CTGAAG | 1 cut(s) | 42 |
| AfaI | GTAC | 1 cut(s) | 630 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 559 |
| AgsI | TTSAA | 3 cut(s) | 274, 352, 472 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 568 |
| AluBI | AGCT | 4 cut(s) | 128, 296, 368, 455 |
| AluI | AGCT | 4 cut(s) | 128, 296, 368, 455 |
| Alw26I | GTCTC | 1 cut(s) | 576 |
| AlwI | GGATC | 1 cut(s) | 249 |
| Ama87I | CYCGRG | 1 cut(s) | 553 |
| Aor13HI | TCCGGA | 1 cut(s) | 559 |
| AoxI | GGCC | 1 cut(s) | 549 |
| ApeKI | GCWGC | 4 cut(s) | 80, 88, 173, 452 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 31, 63 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 528 |
| AspS9I | GGNCC | 3 cut(s) | 28, 550, 557 |
| AsuC2I | CCSGG | 2 cut(s) | 554, 555 |
| AsuHPI | GGTGA | 3 cut(s) | 623, 676, 679 |
| AvaI | CYCGRG | 1 cut(s) | 553 |
| AvaII | GGWCC | 2 cut(s) | 28, 557 |
| BbvI | GCAGC | 4 cut(s) | 67, 100, 160, 464 |
| BccI | CCATC | 2 cut(s) | 356, 489 |
| BceAI | ACGGC | 1 cut(s) | 580 |
| BcnI | CCSGG | 2 cut(s) | 554, 555 |
| BcoDI | GTCTC | 1 cut(s) | 576 |
| BfmI | CTRYAG | 1 cut(s) | 619 |
| BfuAI | ACCTGC | 1 cut(s) | 198 |
| BisI | GCNGC | 4 cut(s) | 81, 89, 174, 453 |
| BlsI | GCNGC | 4 cut(s) | 82, 90, 175, 454 |
| Bme1390I | CCNGG | 2 cut(s) | 554, 555 |
| Bme18I | GGWCC | 2 cut(s) | 28, 557 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 568 |
| BmeT110I | CYCGRG | 1 cut(s) | 553 |
| BmgT120I | GGNCC | 3 cut(s) | 28, 550, 557 |
| BmiI | GGNNCC | 5 cut(s) | 29, 30, 381, 552, 558 |
| BmrFI | CCNGG | 2 cut(s) | 554, 555 |
| BmsI | GCATC | 5 cut(s) | 111, 160, 323, 525, 547 |
| BpuMI | CCSGG | 2 cut(s) | 554, 555 |
| BsaJI | CCNNGG | 4 cut(s) | 258, 546, 552, 553 |
| BsaWI | WCCGGW | 1 cut(s) | 559 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 357, 387 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 559 |
| BseAI | TCCGGA | 1 cut(s) | 559 |
| BseDI | CCNNGG | 4 cut(s) | 258, 546, 552, 553 |
| BseGI | GGATG | 4 cut(s) | 11, 151, 481, 538 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 559 |
| BseMII | CTCAG | 1 cut(s) | 422 |
| BseRI | GAGGAG | 1 cut(s) | 245 |
| BseXI | GCAGC | 4 cut(s) | 67, 100, 160, 464 |
| BshFI | GGCC | 1 cut(s) | 551 |
| BsiHKCI | CYCGRG | 1 cut(s) | 553 |
| BsiSI | CCGG | 2 cut(s) | 554, 560 |
| BslFI | GGGAC | 1 cut(s) | 41 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 559 |
| BsmAI | GTCTC | 1 cut(s) | 576 |
| BsmFI | GGGAC | 1 cut(s) | 41 |
| BsmI | GAATGC | 1 cut(s) | 361 |
| BsnI | GGCC | 1 cut(s) | 551 |
| BsoBI | CYCGRG | 1 cut(s) | 553 |
| Bsp13I | TCCGGA | 1 cut(s) | 559 |
| Bsp143I | GATC | 2 cut(s) | 254, 339 |
| BspANI | GGCC | 1 cut(s) | 551 |
| BspCNI | CTCAG | 1 cut(s) | 421 |
| BspEI | TCCGGA | 1 cut(s) | 559 |
| BspLI | GGNNCC | 5 cut(s) | 29, 30, 381, 552, 558 |
| BspMI | ACCTGC | 1 cut(s) | 198 |
| BspPI | GGATC | 1 cut(s) | 249 |
| BspQI | GCTCTTC | 1 cut(s) | 304 |
| BssECI | CCNNGG | 4 cut(s) | 258, 546, 552, 553 |
| BssMI | GATC | 2 cut(s) | 254, 339 |
| BssT1I | CCWWGG | 2 cut(s) | 258, 546 |
| Bst4CI | ACNGT | 2 cut(s) | 153, 478 |
| Bst6I | CTCTTC | 1 cut(s) | 304 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstDEI | CTNAG | 1 cut(s) | 408 |
| BstF5I | GGATG | 4 cut(s) | 11, 151, 481, 538 |
| BstKTI | GATC | 2 cut(s) | 257, 342 |
| BstMAI | GTCTC | 1 cut(s) | 576 |
| BstMBI | GATC | 2 cut(s) | 254, 339 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 134, 365 |
| BstNSI | RCATGY | 1 cut(s) | 571 |
| BstSCI | CCNGG | 2 cut(s) | 552, 553 |
| BstSFI | CTRYAG | 1 cut(s) | 619 |
| BstV1I | GCAGC | 4 cut(s) | 67, 100, 160, 464 |
| BsuRI | GGCC | 1 cut(s) | 551 |
| BtgZI | GCGATG | 1 cut(s) | 191 |
| BtsCI | GGATG | 4 cut(s) | 11, 151, 481, 538 |
| BveI | ACCTGC | 1 cut(s) | 198 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 3 cut(s) | 28, 550, 557 |
| Cfr9I | CCCGGG | 1 cut(s) | 553 |
| Csp6I | GTAC | 1 cut(s) | 629 |
| CviAII | CATG | 3 cut(s) | 84, 568, 680 |
| CviJI | RGCY | 9 cut(s) | 17, 80, 128, 142, 161, 296, 368, 455, 551 |
| CviKI_1 | RGCY | 9 cut(s) | 17, 80, 128, 142, 161, 296, 368, 455, 551 |
| CviQI | GTAC | 1 cut(s) | 629 |
| DdeI | CTNAG | 1 cut(s) | 408 |
| DpnI | GATC | 2 cut(s) | 256, 341 |
| DpnII | GATC | 2 cut(s) | 254, 339 |
| DriI | GACNNNNNGTC | 1 cut(s) | 568 |
| Eam1104I | CTCTTC | 1 cut(s) | 304 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 568 |
| EarI | CTCTTC | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 2 cut(s) | 258, 546 |
| Eco47I | GGWCC | 2 cut(s) | 28, 557 |
| Eco57I | CTGAAG | 1 cut(s) | 42 |
| Eco88I | CYCGRG | 1 cut(s) | 553 |
| EcoO109I | RGGNCCY | 2 cut(s) | 28, 550 |
| EcoT14I | CCWWGG | 2 cut(s) | 258, 546 |
| EcoT22I | ATGCAT | 1 cut(s) | 540 |
| ErhI | CCWWGG | 2 cut(s) | 258, 546 |
| FaeI | CATG | 3 cut(s) | 87, 571, 683 |
| FaiI | YATR | 5 cut(s) | 35, 85, 306, 569, 681 |
| FaqI | GGGAC | 1 cut(s) | 41 |
| FatI | CATG | 3 cut(s) | 83, 567, 679 |
| Fnu4HI | GCNGC | 4 cut(s) | 81, 89, 174, 453 |
| FokI | GGATG | 4 cut(s) | 18, 158, 468, 525 |
| Fsp4HI | GCNGC | 4 cut(s) | 81, 89, 174, 453 |
| GluI | GCNGC | 4 cut(s) | 81, 89, 174, 453 |
| HaeIII | GGCC | 1 cut(s) | 551 |
| HapII | CCGG | 2 cut(s) | 554, 560 |
| Hin1II | CATG | 3 cut(s) | 87, 571, 683 |
| HincII | GTYRAC | 2 cut(s) | 225, 251 |
| HindII | GTYRAC | 2 cut(s) | 225, 251 |
| HinfI | GANTC | 2 cut(s) | 247, 406 |
| HpaII | CCGG | 2 cut(s) | 554, 560 |
| HphI | GGTGA | 3 cut(s) | 623, 676, 679 |
| Hpy166II | GTNNAC | 3 cut(s) | 225, 251, 670 |
| Hpy188I | TCNGA | 4 cut(s) | 534, 588, 598, 662 |
| Hpy188III | TCNNGA | 3 cut(s) | 343, 560, 648 |
| Hpy8I | GTNNAC | 3 cut(s) | 225, 251, 670 |
| HpyAV | CCTTC | 3 cut(s) | 17, 431, 552 |
| HpyCH4III | ACNGT | 2 cut(s) | 153, 478 |
| HpyCH4IV | ACGT | 1 cut(s) | 631 |
| HpyCH4V | TGCA | 4 cut(s) | 37, 83, 359, 538 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 134, 365 |
| HpyF3I | CTNAG | 1 cut(s) | 408 |
| HpySE526I | ACGT | 1 cut(s) | 631 |
| Hsp92II | CATG | 3 cut(s) | 87, 571, 683 |
| KflI | GGGWCCC | 1 cut(s) | 28 |
| Kpn2I | TCCGGA | 1 cut(s) | 559 |
| Kzo9I | GATC | 2 cut(s) | 254, 339 |
| LguI | GCTCTTC | 1 cut(s) | 304 |
| LmnI | GCTCC | 1 cut(s) | 365 |
| Lsp1109I | GCAGC | 4 cut(s) | 67, 100, 160, 464 |
| LweI | GCATC | 5 cut(s) | 111, 160, 323, 525, 547 |
| MaeII | ACGT | 1 cut(s) | 631 |
| MaeIII | GTNAC | 7 cut(s) | 153, 210, 373, 403, 419, 490, 682 |
| MalI | GATC | 2 cut(s) | 256, 341 |
| MboI | GATC | 2 cut(s) | 254, 339 |
| MboII | GAAGA | 3 cut(s) | 321, 364, 571 |
| MluCI | AATT | 5 cut(s) | 54, 197, 461, 512, 524 |
| MlyI | GAGTC | 2 cut(s) | 256, 400 |
| MnlI | CCTC | 8 cut(s) | 132, 223, 226, 271, 318, 339, 442, 658 |
| Mph1103I | ATGCAT | 1 cut(s) | 540 |
| MroI | TCCGGA | 1 cut(s) | 559 |
| MroXI | GAANNNNTTC | 1 cut(s) | 528 |
| MseI | TTAA | 2 cut(s) | 57, 200 |
| MspI | CCGG | 2 cut(s) | 554, 560 |
| MspR9I | CCNGG | 2 cut(s) | 554, 555 |
| Mva1269I | GAATGC | 1 cut(s) | 361 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 134, 365 |
| NciI | CCSGG | 2 cut(s) | 554, 555 |
| NdeII | GATC | 2 cut(s) | 254, 339 |
| NlaIII | CATG | 3 cut(s) | 87, 571, 683 |
| NlaIV | GGNNCC | 5 cut(s) | 29, 30, 381, 552, 558 |
| NmuCI | GTSAC | 3 cut(s) | 403, 419, 682 |
| NsiI | ATGCAT | 1 cut(s) | 540 |
| NspI | RCATGY | 1 cut(s) | 571 |
| PciSI | GCTCTTC | 1 cut(s) | 304 |
| PctI | GAATGC | 1 cut(s) | 361 |
| PdmI | GAANNNNTTC | 1 cut(s) | 528 |
| PkrI | GCNGC | 4 cut(s) | 82, 90, 175, 454 |
| PleI | GAGTC | 2 cut(s) | 255, 400 |
| PpsI | GAGTC | 2 cut(s) | 255, 400 |
| PpuMI | RGGWCCY | 1 cut(s) | 28 |
| Psp5II | RGGWCCY | 1 cut(s) | 28 |
| PspN4I | GGNNCC | 5 cut(s) | 29, 30, 381, 552, 558 |
| PspPI | GGNCC | 3 cut(s) | 28, 550, 557 |
| PspPPI | RGGWCCY | 1 cut(s) | 28 |
| RsaI | GTAC | 1 cut(s) | 630 |
| RsaNI | GTAC | 1 cut(s) | 629 |
| SapI | GCTCTTC | 1 cut(s) | 304 |
| SaqAI | TTAA | 2 cut(s) | 57, 200 |
| SatI | GCNGC | 4 cut(s) | 81, 89, 174, 453 |
| Sau3AI | GATC | 2 cut(s) | 254, 339 |
| Sau96I | GGNCC | 3 cut(s) | 28, 550, 557 |
| SchI | GAGTC | 2 cut(s) | 256, 400 |
| ScrFI | CCNGG | 2 cut(s) | 554, 555 |
| SfaNI | GCATC | 5 cut(s) | 111, 160, 323, 525, 547 |
| SfcI | CTRYAG | 1 cut(s) | 619 |
| SinI | GGWCC | 2 cut(s) | 28, 557 |
| SmaI | CCCGGG | 1 cut(s) | 555 |
| Sse9I | AATT | 5 cut(s) | 54, 197, 461, 512, 524 |
| StyD4I | CCNGG | 2 cut(s) | 552, 553 |
| StyI | CCWWGG | 2 cut(s) | 258, 546 |
| TaaI | ACNGT | 2 cut(s) | 153, 478 |
| TaiI | ACGT | 1 cut(s) | 634 |
| TaqI | TCGA | 1 cut(s) | 109 |
| TasI | AATT | 5 cut(s) | 54, 197, 461, 512, 524 |
| Tru1I | TTAA | 2 cut(s) | 57, 200 |
| Tru9I | TTAA | 2 cut(s) | 57, 200 |
| TseFI | GTSAC | 3 cut(s) | 403, 419, 682 |
| TseI | GCWGC | 4 cut(s) | 80, 88, 173, 452 |
| Tsp45I | GTSAC | 3 cut(s) | 403, 419, 682 |
| TspDTI | ATGAA | 4 cut(s) | 162, 194, 293, 518 |
| TspGWI | ACGGA | 4 cut(s) | 131, 346, 392, 449 |
| TspMI | CCCGGG | 1 cut(s) | 553 |
| VpaK11BI | GGWCC | 2 cut(s) | 28, 557 |
| XceI | RCATGY | 1 cut(s) | 571 |
| XmaI | CCCGGG | 1 cut(s) | 553 |
| XmnI | GAANNNNTTC | 1 cut(s) | 528 |
| Zsp2I | ATGCAT | 1 cut(s) | 540 |