Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 725 |
| AccI | GTMKAC | 1 cut(s) | 463 |
| AccIII | TCCGGA | 1 cut(s) | 325 |
| AciI | CCGC | 1 cut(s) | 695 |
| AclWI | GGATC | 3 cut(s) | 415, 624, 798 |
| AcoI | YGGCCR | 1 cut(s) | 372 |
| AcuI | CTGAAG | 1 cut(s) | 842 |
| AdeI | CACNNNGTG | 1 cut(s) | 85 |
| AfaI | GTAC | 1 cut(s) | 240 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 145, 332, 725 |
| AgeI | ACCGGT | 1 cut(s) | 622 |
| AgsI | TTSAA | 2 cut(s) | 659, 805 |
| AjnI | CCWGG | 2 cut(s) | 81, 785 |
| AluBI | AGCT | 2 cut(s) | 707, 774 |
| AluI | AGCT | 2 cut(s) | 707, 774 |
| Alw21I | GWGCWC | 1 cut(s) | 90 |
| Alw44I | GTGCAC | 1 cut(s) | 86 |
| AlwI | GGATC | 3 cut(s) | 415, 624, 798 |
| Aor13HI | TCCGGA | 1 cut(s) | 325 |
| AoxI | GGCC | 1 cut(s) | 372 |
| ApaLI | GTGCAC | 1 cut(s) | 86 |
| ApeKI | GCWGC | 1 cut(s) | 524 |
| AsiGI | ACCGGT | 1 cut(s) | 622 |
| AspA2I | CCTAGG | 1 cut(s) | 424 |
| AspLEI | GCGC | 1 cut(s) | 303 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AsuHPI | GGTGA | 3 cut(s) | 41, 259, 419 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| AvrII | CCTAGG | 1 cut(s) | 424 |
| BaeGI | GKGCMC | 1 cut(s) | 90 |
| BalI | TGGCCA | 1 cut(s) | 374 |
| Bbv12I | GWGCWC | 1 cut(s) | 90 |
| BbvI | GCAGC | 1 cut(s) | 536 |
| BccI | CCATC | 2 cut(s) | 719, 730 |
| BciT130I | CCWGG | 2 cut(s) | 83, 787 |
| BfaI | CTAG | 2 cut(s) | 425, 782 |
| BfoI | RGCGCY | 1 cut(s) | 304 |
| BisI | GCNGC | 1 cut(s) | 525 |
| BlnI | CCTAGG | 1 cut(s) | 424 |
| BlsI | GCNGC | 1 cut(s) | 526 |
| Bme1390I | CCNGG | 2 cut(s) | 83, 787 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 1 cut(s) | 650 |
| BmrFI | CCNGG | 2 cut(s) | 83, 787 |
| BmsI | GCATC | 2 cut(s) | 256, 466 |
| BoxI | GACNNNNGTC | 1 cut(s) | 382 |
| BpmI | CTGGAG | 1 cut(s) | 465 |
| Bsa29I | ATCGAT | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 3 cut(s) | 25, 424, 786 |
| BsaWI | WCCGGW | 3 cut(s) | 325, 622, 651 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 145, 332, 725 |
| Bse118I | RCCGGY | 1 cut(s) | 622 |
| Bse1I | ACTGG | 1 cut(s) | 849 |
| Bse3DI | GCAATG | 2 cut(s) | 112, 165 |
| BseAI | TCCGGA | 1 cut(s) | 325 |
| BseBI | CCWGG | 2 cut(s) | 83, 787 |
| BseCI | ATCGAT | 1 cut(s) | 264 |
| BseDI | CCNNGG | 3 cut(s) | 25, 424, 786 |
| BseGI | GGATG | 5 cut(s) | 69, 223, 322, 481, 853 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 145, 332, 725 |
| BseMI | GCAATG | 2 cut(s) | 112, 165 |
| BseNI | ACTGG | 1 cut(s) | 849 |
| BseSI | GKGCMC | 1 cut(s) | 90 |
| BseXI | GCAGC | 1 cut(s) | 536 |
| BsgI | GTGCAG | 2 cut(s) | 314, 761 |
| BshFI | GGCC | 1 cut(s) | 374 |
| BshTI | ACCGGT | 1 cut(s) | 622 |
| BshVI | ATCGAT | 1 cut(s) | 264 |
| BsiHKAI | GWGCWC | 1 cut(s) | 90 |
| BsiSI | CCGG | 3 cut(s) | 326, 623, 652 |
| BslFI | GGGAC | 2 cut(s) | 546, 822 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 145, 332, 725 |
| BsmFI | GGGAC | 2 cut(s) | 546, 822 |
| BsnI | GGCC | 1 cut(s) | 374 |
| Bsp1286I | GDGCHC | 1 cut(s) | 90 |
| Bsp13I | TCCGGA | 1 cut(s) | 325 |
| Bsp143I | GATC | 4 cut(s) | 178, 420, 616, 790 |
| BspACI | CCGC | 1 cut(s) | 695 |
| BspANI | GGCC | 1 cut(s) | 374 |
| BspDI | ATCGAT | 1 cut(s) | 264 |
| BspEI | TCCGGA | 1 cut(s) | 325 |
| BspHI | TCATGA | 1 cut(s) | 676 |
| BspLI | GGNNCC | 1 cut(s) | 650 |
| BspPI | GGATC | 3 cut(s) | 415, 624, 798 |
| BspQI | GCTCTTC | 1 cut(s) | 213 |
| BsrDI | GCAATG | 2 cut(s) | 112, 165 |
| BsrFI | RCCGGY | 1 cut(s) | 622 |
| BsrI | ACTGG | 1 cut(s) | 849 |
| BssAI | RCCGGY | 1 cut(s) | 622 |
| BssECI | CCNNGG | 3 cut(s) | 25, 424, 786 |
| BssMI | GATC | 4 cut(s) | 178, 420, 616, 790 |
| BssT1I | CCWWGG | 2 cut(s) | 25, 424 |
| Bst2UI | CCWGG | 2 cut(s) | 83, 787 |
| Bst4CI | ACNGT | 2 cut(s) | 247, 600 |
| Bst6I | CTCTTC | 3 cut(s) | 213, 654, 813 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 85 |
| BstDEI | CTNAG | 1 cut(s) | 101 |
| BstF5I | GGATG | 5 cut(s) | 69, 223, 322, 481, 853 |
| BstH2I | RGCGCY | 1 cut(s) | 304 |
| BstHHI | GCGC | 1 cut(s) | 303 |
| BstKTI | GATC | 4 cut(s) | 181, 423, 619, 793 |
| BstMBI | GATC | 4 cut(s) | 178, 420, 616, 790 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 85 |
| BstNI | CCWGG | 2 cut(s) | 83, 787 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 382 |
| BstSCI | CCNGG | 2 cut(s) | 81, 785 |
| BstSLI | GKGCMC | 1 cut(s) | 90 |
| BstV1I | GCAGC | 1 cut(s) | 536 |
| BstX2I | RGATCY | 1 cut(s) | 420 |
| BstYI | RGATCY | 1 cut(s) | 420 |
| Bsu15I | ATCGAT | 1 cut(s) | 264 |
| BsuRI | GGCC | 1 cut(s) | 374 |
| BsuTUI | ATCGAT | 1 cut(s) | 264 |
| BtsCI | GGATG | 5 cut(s) | 69, 223, 322, 481, 853 |
| BtsI | GCAGTG | 1 cut(s) | 302 |
| BtsIMutI | CAGTG | 1 cut(s) | 302 |
| CciI | TCATGA | 1 cut(s) | 676 |
| CfoI | GCGC | 1 cut(s) | 303 |
| Cfr10I | RCCGGY | 1 cut(s) | 622 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| ClaI | ATCGAT | 1 cut(s) | 264 |
| CsiI | ACCWGGT | 1 cut(s) | 81 |
| Csp6I | GTAC | 1 cut(s) | 239 |
| CspAI | ACCGGT | 1 cut(s) | 622 |
| CviAII | CATG | 3 cut(s) | 53, 587, 677 |
| CviQI | GTAC | 1 cut(s) | 239 |
| DdeI | CTNAG | 1 cut(s) | 101 |
| DpnI | GATC | 4 cut(s) | 180, 422, 618, 792 |
| DpnII | GATC | 4 cut(s) | 178, 420, 616, 790 |
| DraIII | CACNNNGTG | 1 cut(s) | 85 |
| EaeI | YGGCCR | 1 cut(s) | 372 |
| Eam1104I | CTCTTC | 3 cut(s) | 213, 654, 813 |
| EarI | CTCTTC | 3 cut(s) | 213, 654, 813 |
| Eco130I | CCWWGG | 2 cut(s) | 25, 424 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco57I | CTGAAG | 1 cut(s) | 842 |
| EcoRII | CCWGG | 2 cut(s) | 81, 785 |
| EcoT14I | CCWWGG | 2 cut(s) | 25, 424 |
| ErhI | CCWWGG | 2 cut(s) | 25, 424 |
| FaeI | CATG | 3 cut(s) | 56, 590, 680 |
| FaqI | GGGAC | 2 cut(s) | 546, 822 |
| FatI | CATG | 3 cut(s) | 52, 586, 676 |
| FblI | GTMKAC | 1 cut(s) | 463 |
| Fnu4HI | GCNGC | 1 cut(s) | 525 |
| FokI | GGATG | 5 cut(s) | 56, 230, 309, 488, 860 |
| Fsp4HI | GCNGC | 1 cut(s) | 525 |
| FspBI | CTAG | 2 cut(s) | 425, 782 |
| GlaI | GCGC | 1 cut(s) | 302 |
| GluI | GCNGC | 1 cut(s) | 525 |
| GsuI | CTGGAG | 1 cut(s) | 465 |
| HaeII | RGCGCY | 1 cut(s) | 304 |
| HaeIII | GGCC | 1 cut(s) | 374 |
| HapII | CCGG | 3 cut(s) | 326, 623, 652 |
| HhaI | GCGC | 1 cut(s) | 303 |
| Hin1II | CATG | 3 cut(s) | 56, 590, 680 |
| Hin6I | GCGC | 1 cut(s) | 301 |
| HinP1I | GCGC | 1 cut(s) | 301 |
| HindIII | AAGCTT | 1 cut(s) | 705 |
| HinfI | GANTC | 9 cut(s) | 37, 46, 221, 355, 460, 534, 583, 680, 872 |
| HpaII | CCGG | 3 cut(s) | 326, 623, 652 |
| HphI | GGTGA | 3 cut(s) | 41, 259, 419 |
| Hpy166II | GTNNAC | 3 cut(s) | 88, 250, 464 |
| Hpy188I | TCNGA | 6 cut(s) | 289, 388, 612, 735, 795, 861 |
| Hpy188III | TCNNGA | 6 cut(s) | 10, 73, 326, 444, 572, 677 |
| Hpy8I | GTNNAC | 3 cut(s) | 88, 250, 464 |
| Hpy99I | CGWCG | 1 cut(s) | 388 |
| HpyAV | CCTTC | 3 cut(s) | 271, 607, 639 |
| HpyCH4III | ACNGT | 2 cut(s) | 247, 600 |
| HpyCH4IV | ACGT | 3 cut(s) | 379, 568, 811 |
| HpyCH4V | TGCA | 5 cut(s) | 88, 117, 295, 628, 742 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 85 |
| HpyF3I | CTNAG | 1 cut(s) | 101 |
| HpySE526I | ACGT | 3 cut(s) | 379, 568, 811 |
| Hsp92II | CATG | 3 cut(s) | 56, 590, 680 |
| HspAI | GCGC | 1 cut(s) | 301 |
| Kpn2I | TCCGGA | 1 cut(s) | 325 |
| Kzo9I | GATC | 4 cut(s) | 178, 420, 616, 790 |
| LguI | GCTCTTC | 1 cut(s) | 213 |
| LmnI | GCTCC | 1 cut(s) | 771 |
| Lsp1109I | GCAGC | 1 cut(s) | 536 |
| LweI | GCATC | 2 cut(s) | 256, 466 |
| MabI | ACCWGGT | 1 cut(s) | 81 |
| MaeI | CTAG | 2 cut(s) | 425, 782 |
| MaeII | ACGT | 3 cut(s) | 379, 568, 811 |
| MaeIII | GTNAC | 2 cut(s) | 429, 548 |
| MalI | GATC | 4 cut(s) | 180, 422, 618, 792 |
| MboI | GATC | 4 cut(s) | 178, 420, 616, 790 |
| MboII | GAAGA | 5 cut(s) | 200, 671, 770, 830, 848 |
| MflI | RGATCY | 1 cut(s) | 420 |
| MhlI | GDGCHC | 1 cut(s) | 90 |
| MlsI | TGGCCA | 1 cut(s) | 374 |
| MluCI | AATT | 3 cut(s) | 19, 756, 880 |
| MluNI | TGGCCA | 1 cut(s) | 374 |
| MlyI | GAGTC | 4 cut(s) | 40, 469, 528, 689 |
| MmeI | TCCRAC | 2 cut(s) | 366, 582 |
| MnlI | CCTC | 5 cut(s) | 149, 523, 572, 694, 820 |
| Mox20I | TGGCCA | 1 cut(s) | 374 |
| MroI | TCCGGA | 1 cut(s) | 325 |
| MscI | TGGCCA | 1 cut(s) | 374 |
| MseI | TTAA | 2 cut(s) | 414, 759 |
| MslI | CAYNNNNRTG | 1 cut(s) | 633 |
| Msp20I | TGGCCA | 1 cut(s) | 374 |
| MspI | CCGG | 3 cut(s) | 326, 623, 652 |
| MspR9I | CCNGG | 2 cut(s) | 83, 787 |
| MvaI | CCWGG | 2 cut(s) | 83, 787 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 85 |
| NdeII | GATC | 4 cut(s) | 178, 420, 616, 790 |
| NlaIII | CATG | 3 cut(s) | 56, 590, 680 |
| NlaIV | GGNNCC | 1 cut(s) | 650 |
| NmuCI | GTSAC | 1 cut(s) | 548 |
| PagI | TCATGA | 1 cut(s) | 676 |
| PciSI | GCTCTTC | 1 cut(s) | 213 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 640 |
| PfeI | GAWTC | 5 cut(s) | 37, 221, 355, 583, 872 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 725 |
| PinAI | ACCGGT | 1 cut(s) | 622 |
| PkrI | GCNGC | 1 cut(s) | 526 |
| PleI | GAGTC | 4 cut(s) | 40, 468, 528, 688 |
| PpsI | GAGTC | 4 cut(s) | 40, 468, 528, 688 |
| PshAI | GACNNNNGTC | 1 cut(s) | 382 |
| Psp6I | CCWGG | 2 cut(s) | 81, 785 |
| PspGI | CCWGG | 2 cut(s) | 81, 785 |
| PspN4I | GGNNCC | 1 cut(s) | 650 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PsuI | RGATCY | 1 cut(s) | 420 |
| RsaI | GTAC | 1 cut(s) | 240 |
| RsaNI | GTAC | 1 cut(s) | 239 |
| RseI | CAYNNNNRTG | 1 cut(s) | 633 |
| SapI | GCTCTTC | 1 cut(s) | 213 |
| SaqAI | TTAA | 2 cut(s) | 414, 759 |
| SatI | GCNGC | 1 cut(s) | 525 |
| Sau3AI | GATC | 4 cut(s) | 178, 420, 616, 790 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 4 cut(s) | 40, 469, 528, 689 |
| ScrFI | CCNGG | 2 cut(s) | 83, 787 |
| SduI | GDGCHC | 1 cut(s) | 90 |
| SetI | ASST | 9 cut(s) | 31, 87, 382, 409, 571, 650, 709, 776, 814 |
| SexAI | ACCWGGT | 1 cut(s) | 81 |
| SfaNI | GCATC | 2 cut(s) | 256, 466 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 633 |
| Sse9I | AATT | 3 cut(s) | 19, 756, 880 |
| SsiI | CCGC | 1 cut(s) | 695 |
| SspMI | CTAG | 2 cut(s) | 425, 782 |
| StyD4I | CCNGG | 2 cut(s) | 81, 785 |
| StyI | CCWWGG | 2 cut(s) | 25, 424 |
| TaaI | ACNGT | 2 cut(s) | 247, 600 |
| TaiI | ACGT | 3 cut(s) | 382, 571, 814 |
| TaqI | TCGA | 2 cut(s) | 40, 264 |
| TasI | AATT | 3 cut(s) | 19, 756, 880 |
| TfiI | GAWTC | 5 cut(s) | 37, 221, 355, 583, 872 |
| Tru1I | TTAA | 2 cut(s) | 414, 759 |
| Tru9I | TTAA | 2 cut(s) | 414, 759 |
| TscAI | CASTG | 1 cut(s) | 302 |
| TseFI | GTSAC | 1 cut(s) | 548 |
| TseI | GCWGC | 1 cut(s) | 524 |
| Tsp45I | GTSAC | 1 cut(s) | 548 |
| TspDTI | ATGAA | 4 cut(s) | 17, 250, 290, 665 |
| TspGWI | ACGGA | 1 cut(s) | 466 |
| TspRI | CASTG | 1 cut(s) | 302 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 725 |
| VneI | GTGCAC | 1 cut(s) | 86 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XmaJI | CCTAGG | 1 cut(s) | 424 |
| XmiI | GTMKAC | 1 cut(s) | 463 |
| XspI | CTAG | 2 cut(s) | 425, 782 |