ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 244 |
| AccI | GTMKAC | 1 cut(s) | 891 |
| AciI | CCGC | 2 cut(s) | 713, 740 |
| AclI | AACGTT | 1 cut(s) | 446 |
| AclWI | GGATC | 1 cut(s) | 672 |
| AcoI | YGGCCR | 1 cut(s) | 678 |
| AcsI | RAATTY | 2 cut(s) | 503, 698 |
| AcuI | CTGAAG | 1 cut(s) | 773 |
| AcyI | GRCGYC | 1 cut(s) | 241 |
| AfaI | GTAC | 2 cut(s) | 433, 756 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 206 |
| AgsI | TTSAA | 2 cut(s) | 311, 361 |
| AjnI | CCWGG | 1 cut(s) | 419 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 208, 240 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 383, 415 |
| AluBI | AGCT | 8 cut(s) | 25, 357, 476, 497, 524, 563, 671, 887 |
| AluI | AGCT | 8 cut(s) | 25, 357, 476, 497, 524, 563, 671, 887 |
| Alw21I | GWGCWC | 1 cut(s) | 499 |
| Alw26I | GTCTC | 2 cut(s) | 169, 279 |
| AlwI | GGATC | 1 cut(s) | 672 |
| AoxI | GGCC | 1 cut(s) | 678 |
| ApeKI | GCWGC | 1 cut(s) | 770 |
| ApoI | RAATTY | 2 cut(s) | 503, 698 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 220 |
| AspA2I | CCTAGG | 1 cut(s) | 758 |
| AspS9I | GGNCC | 1 cut(s) | 407 |
| AsuC2I | CCSGG | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 5 cut(s) | 127, 184, 409, 650, 853 |
| AvaII | GGWCC | 1 cut(s) | 407 |
| AvrII | CCTAGG | 1 cut(s) | 758 |
| BalI | TGGCCA | 1 cut(s) | 680 |
| BanII | GRGCYC | 2 cut(s) | 200, 499 |
| BbsI | GAAGAC | 2 cut(s) | 271, 560 |
| Bbv12I | GWGCWC | 1 cut(s) | 499 |
| BbvI | GCAGC | 1 cut(s) | 757 |
| BccI | CCATC | 2 cut(s) | 142, 155 |
| BceAI | ACGGC | 1 cut(s) | 523 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 790, 824 |
| BciT130I | CCWGG | 1 cut(s) | 421 |
| BciVI | GTATCC | 2 cut(s) | 91, 267 |
| BclI | TGATCA | 1 cut(s) | 529 |
| BcnI | CCSGG | 1 cut(s) | 200 |
| BcoDI | GTCTC | 2 cut(s) | 169, 279 |
| BfaI | CTAG | 3 cut(s) | 525, 726, 759 |
| BfmI | CTRYAG | 1 cut(s) | 40 |
| BfuI | GTATCC | 2 cut(s) | 91, 267 |
| BisI | GCNGC | 1 cut(s) | 771 |
| BlnI | CCTAGG | 1 cut(s) | 758 |
| BlsI | GCNGC | 1 cut(s) | 772 |
| Bme1390I | CCNGG | 2 cut(s) | 200, 421 |
| Bme18I | GGWCC | 1 cut(s) | 407 |
| BmgT120I | GGNCC | 1 cut(s) | 407 |
| BmiI | GGNNCC | 3 cut(s) | 197, 408, 409 |
| BmrFI | CCNGG | 2 cut(s) | 200, 421 |
| BmrI | ACTGGG | 3 cut(s) | 192, 216, 244 |
| BmsI | GCATC | 1 cut(s) | 112 |
| BmuI | ACTGGG | 3 cut(s) | 192, 216, 244 |
| BpiI | GAAGAC | 2 cut(s) | 271, 560 |
| BpmI | CTGGAG | 1 cut(s) | 442 |
| BpuMI | CCSGG | 1 cut(s) | 200 |
| BsaBI | GATNNNNATC | 2 cut(s) | 822, 828 |
| BsaHI | GRCGYC | 1 cut(s) | 241 |
| BsaJI | CCNNGG | 2 cut(s) | 758, 895 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 415, 445 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 206 |
| Bse1I | ACTGG | 4 cut(s) | 187, 211, 250, 681 |
| Bse8I | GATNNNNATC | 2 cut(s) | 822, 828 |
| BseBI | CCWGG | 1 cut(s) | 421 |
| BseDI | CCNNGG | 2 cut(s) | 758, 895 |
| BseGI | GGATG | 1 cut(s) | 909 |
| BseJI | GATNNNNATC | 2 cut(s) | 822, 828 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 206 |
| BseNI | ACTGG | 4 cut(s) | 187, 211, 250, 681 |
| BseXI | GCAGC | 1 cut(s) | 757 |
| BseYI | CCCAGC | 1 cut(s) | 25 |
| BsgI | GTGCAG | 2 cut(s) | 756, 830 |
| BshFI | GGCC | 1 cut(s) | 680 |
| BsiHKAI | GWGCWC | 1 cut(s) | 499 |
| BsiSI | CCGG | 1 cut(s) | 200 |
| BslFI | GGGAC | 1 cut(s) | 393 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 206 |
| BsmAI | GTCTC | 2 cut(s) | 169, 279 |
| BsmFI | GGGAC | 1 cut(s) | 393 |
| BsnI | GGCC | 1 cut(s) | 680 |
| Bsp1286I | GDGCHC | 2 cut(s) | 200, 499 |
| Bsp143I | GATC | 4 cut(s) | 529, 593, 664, 823 |
| BspACI | CCGC | 2 cut(s) | 713, 740 |
| BspANI | GGCC | 1 cut(s) | 680 |
| BspHI | TCATGA | 2 cut(s) | 439, 499 |
| BspLI | GGNNCC | 3 cut(s) | 197, 408, 409 |
| BspPI | GGATC | 1 cut(s) | 672 |
| BsrI | ACTGG | 4 cut(s) | 187, 211, 250, 681 |
| BssECI | CCNNGG | 2 cut(s) | 758, 895 |
| BssMI | GATC | 4 cut(s) | 529, 593, 664, 823 |
| BssNAI | GTATAC | 1 cut(s) | 892 |
| BssNI | GRCGYC | 1 cut(s) | 241 |
| BssT1I | CCWWGG | 1 cut(s) | 758 |
| Bst1107I | GTATAC | 1 cut(s) | 892 |
| Bst2UI | CCWGG | 1 cut(s) | 421 |
| Bst4CI | ACNGT | 4 cut(s) | 41, 339, 436, 676 |
| BstACI | GRCGYC | 1 cut(s) | 241 |
| BstDSI | CCRYGG | 1 cut(s) | 895 |
| BstF5I | GGATG | 1 cut(s) | 909 |
| BstKTI | GATC | 4 cut(s) | 532, 596, 667, 826 |
| BstMAI | GTCTC | 2 cut(s) | 169, 279 |
| BstMBI | GATC | 4 cut(s) | 529, 593, 664, 823 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 677, 779 |
| BstNI | CCWGG | 1 cut(s) | 421 |
| BstNSI | RCATGY | 1 cut(s) | 755 |
| BstSCI | CCNGG | 2 cut(s) | 198, 419 |
| BstSFI | CTRYAG | 1 cut(s) | 40 |
| BstV1I | GCAGC | 1 cut(s) | 757 |
| BstV2I | GAAGAC | 2 cut(s) | 271, 560 |
| BstZ17I | GTATAC | 1 cut(s) | 892 |
| BsuI | GTATCC | 2 cut(s) | 91, 267 |
| BsuRI | GGCC | 1 cut(s) | 680 |
| BtgI | CCRYGG | 1 cut(s) | 895 |
| BtsCI | GGATG | 1 cut(s) | 909 |
| CciI | TCATGA | 2 cut(s) | 439, 499 |
| Cfr13I | GGNCC | 1 cut(s) | 407 |
| Csp6I | GTAC | 2 cut(s) | 432, 755 |
| CviAII | CATG | 6 cut(s) | 263, 270, 412, 440, 500, 752 |
| CviQI | GTAC | 2 cut(s) | 432, 755 |
| DpnI | GATC | 4 cut(s) | 531, 595, 666, 825 |
| DpnII | GATC | 4 cut(s) | 529, 593, 664, 823 |
| EaeI | YGGCCR | 1 cut(s) | 678 |
| Ecl136II | GAGCTC | 1 cut(s) | 497 |
| Eco130I | CCWWGG | 1 cut(s) | 758 |
| Eco24I | GRGCYC | 2 cut(s) | 200, 499 |
| Eco47I | GGWCC | 1 cut(s) | 407 |
| Eco53kI | GAGCTC | 1 cut(s) | 497 |
| Eco57I | CTGAAG | 1 cut(s) | 773 |
| EcoICRI | GAGCTC | 1 cut(s) | 497 |
| EcoO109I | RGGNCCY | 1 cut(s) | 407 |
| EcoRII | CCWGG | 1 cut(s) | 419 |
| EcoT14I | CCWWGG | 1 cut(s) | 758 |
| EcoT38I | GRGCYC | 2 cut(s) | 200, 499 |
| ErhI | CCWWGG | 1 cut(s) | 758 |
| FaeI | CATG | 6 cut(s) | 266, 273, 415, 443, 503, 755 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 771, 803 |
| FaqI | GGGAC | 1 cut(s) | 393 |
| FatI | CATG | 6 cut(s) | 262, 269, 411, 439, 499, 751 |
| FbaI | TGATCA | 1 cut(s) | 529 |
| FblI | GTMKAC | 1 cut(s) | 891 |
| Fnu4HI | GCNGC | 1 cut(s) | 771 |
| FriOI | GRGCYC | 2 cut(s) | 200, 499 |
| Fsp4HI | GCNGC | 1 cut(s) | 771 |
| FspBI | CTAG | 3 cut(s) | 525, 726, 759 |
| GluI | GCNGC | 1 cut(s) | 771 |
| GsaI | CCCAGC | 1 cut(s) | 29 |
| GsuI | CTGGAG | 1 cut(s) | 442 |
| HaeIII | GGCC | 1 cut(s) | 680 |
| HapII | CCGG | 1 cut(s) | 200 |
| Hin1I | GRCGYC | 1 cut(s) | 241 |
| Hin1II | CATG | 6 cut(s) | 266, 273, 415, 443, 503, 755 |
| HindIII | AAGCTT | 1 cut(s) | 474 |
| HpaII | CCGG | 1 cut(s) | 200 |
| HphI | GGTGA | 5 cut(s) | 127, 184, 409, 650, 853 |
| Hpy166II | GTNNAC | 3 cut(s) | 402, 417, 892 |
| Hpy188I | TCNGA | 2 cut(s) | 284, 801 |
| Hpy188III | TCNNGA | 2 cut(s) | 440, 500 |
| Hpy8I | GTNNAC | 3 cut(s) | 402, 417, 892 |
| Hpy99I | CGWCG | 1 cut(s) | 243 |
| HpyAV | CCTTC | 3 cut(s) | 106, 643, 797 |
| HpyCH4III | ACNGT | 4 cut(s) | 41, 339, 436, 676 |
| HpyCH4IV | ACGT | 3 cut(s) | 241, 301, 446 |
| HpyCH4V | TGCA | 4 cut(s) | 125, 269, 773, 811 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 677, 779 |
| HpySE526I | ACGT | 3 cut(s) | 241, 301, 446 |
| Hsp92I | GRCGYC | 1 cut(s) | 241 |
| Hsp92II | CATG | 6 cut(s) | 266, 273, 415, 443, 503, 755 |
| KflI | GGGWCCC | 1 cut(s) | 407 |
| Ksp22I | TGATCA | 1 cut(s) | 529 |
| Kzo9I | GATC | 4 cut(s) | 529, 593, 664, 823 |
| LmnI | GCTCC | 3 cut(s) | 195, 521, 560 |
| Lsp1109I | GCAGC | 1 cut(s) | 757 |
| LweI | GCATC | 1 cut(s) | 112 |
| MaeI | CTAG | 3 cut(s) | 525, 726, 759 |
| MaeII | ACGT | 3 cut(s) | 241, 301, 446 |
| MalI | GATC | 4 cut(s) | 531, 595, 666, 825 |
| MboI | GATC | 4 cut(s) | 529, 593, 664, 823 |
| MboII | GAAGA | 5 cut(s) | 271, 323, 560, 638, 869 |
| MhlI | GDGCHC | 2 cut(s) | 200, 499 |
| MlsI | TGGCCA | 1 cut(s) | 680 |
| MluCI | AATT | 8 cut(s) | 156, 305, 329, 503, 642, 698, 719, 765 |
| MluNI | TGGCCA | 1 cut(s) | 680 |
| MmeI | TCCRAC | 2 cut(s) | 429, 499 |
| MnlI | CCTC | 9 cut(s) | 65, 87, 270, 317, 508, 655, 709, 793, 893 |
| Mox20I | TGGCCA | 1 cut(s) | 680 |
| MroXI | GAANNNNTTC | 1 cut(s) | 220 |
| MscI | TGGCCA | 1 cut(s) | 680 |
| MseI | TTAA | 5 cut(s) | 155, 291, 332, 621, 702 |
| MslI | CAYNNNNRTG | 1 cut(s) | 143 |
| Msp20I | TGGCCA | 1 cut(s) | 680 |
| MspI | CCGG | 1 cut(s) | 200 |
| MspR9I | CCNGG | 2 cut(s) | 200, 421 |
| MvaI | CCWGG | 1 cut(s) | 421 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 677, 779 |
| NciI | CCSGG | 1 cut(s) | 200 |
| NdeII | GATC | 4 cut(s) | 529, 593, 664, 823 |
| NlaIII | CATG | 6 cut(s) | 266, 273, 415, 443, 503, 755 |
| NlaIV | GGNNCC | 3 cut(s) | 197, 408, 409 |
| NspI | RCATGY | 1 cut(s) | 755 |
| PagI | TCATGA | 2 cut(s) | 439, 499 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 832 |
| PdmI | GAANNNNTTC | 1 cut(s) | 220 |
| PkrI | GCNGC | 1 cut(s) | 772 |
| PpuMI | RGGWCCY | 1 cut(s) | 407 |
| Psp124BI | GAGCTC | 1 cut(s) | 499 |
| Psp1406I | AACGTT | 1 cut(s) | 446 |
| Psp5II | RGGWCCY | 1 cut(s) | 407 |
| Psp6I | CCWGG | 1 cut(s) | 419 |
| PspFI | CCCAGC | 1 cut(s) | 25 |
| PspGI | CCWGG | 1 cut(s) | 419 |
| PspN4I | GGNNCC | 3 cut(s) | 197, 408, 409 |
| PspPI | GGNCC | 1 cut(s) | 407 |
| PspPPI | RGGWCCY | 1 cut(s) | 407 |
| RsaI | GTAC | 2 cut(s) | 433, 756 |
| RsaNI | GTAC | 2 cut(s) | 432, 755 |
| RseI | CAYNNNNRTG | 1 cut(s) | 143 |
| SacI | GAGCTC | 1 cut(s) | 499 |
| SaqAI | TTAA | 5 cut(s) | 155, 291, 332, 621, 702 |
| SatI | GCNGC | 1 cut(s) | 771 |
| Sau3AI | GATC | 4 cut(s) | 529, 593, 664, 823 |
| Sau96I | GGNCC | 1 cut(s) | 407 |
| ScrFI | CCNGG | 2 cut(s) | 200, 421 |
| SduI | GDGCHC | 2 cut(s) | 200, 499 |
| SfaNI | GCATC | 1 cut(s) | 112 |
| SfcI | CTRYAG | 1 cut(s) | 40 |
| SinI | GGWCC | 1 cut(s) | 407 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 143 |
| Sse9I | AATT | 8 cut(s) | 156, 305, 329, 503, 642, 698, 719, 765 |
| SsiI | CCGC | 2 cut(s) | 713, 740 |
| SspMI | CTAG | 3 cut(s) | 525, 726, 759 |
| SstI | GAGCTC | 1 cut(s) | 499 |
| StyD4I | CCNGG | 2 cut(s) | 198, 419 |
| StyI | CCWWGG | 1 cut(s) | 758 |
| TaaI | ACNGT | 4 cut(s) | 41, 339, 436, 676 |
| TaiI | ACGT | 3 cut(s) | 244, 304, 449 |
| TaqI | TCGA | 1 cut(s) | 826 |
| TasI | AATT | 8 cut(s) | 156, 305, 329, 503, 642, 698, 719, 765 |
| Tru1I | TTAA | 5 cut(s) | 155, 291, 332, 621, 702 |
| Tru9I | TTAA | 5 cut(s) | 155, 291, 332, 621, 702 |
| TseI | GCWGC | 1 cut(s) | 770 |
| TspDTI | ATGAA | 7 cut(s) | 127, 428, 451, 456, 486, 497, 516 |
| TspGWI | ACGGA | 1 cut(s) | 912 |
| VpaK11BI | GGWCC | 1 cut(s) | 407 |
| XapI | RAATTY | 2 cut(s) | 503, 698 |
| XceI | RCATGY | 1 cut(s) | 755 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 688 |
| XmaJI | CCTAGG | 1 cut(s) | 758 |
| XmiI | GTMKAC | 1 cut(s) | 891 |
| XmnI | GAANNNNTTC | 1 cut(s) | 220 |
| XspI | CTAG | 3 cut(s) | 525, 726, 759 |
| ZraI | GACGTC | 1 cut(s) | 242 |