ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 557 |
| AccI | GTMKAC | 1 cut(s) | 241 |
| AciI | CCGC | 3 cut(s) | 119, 193, 227 |
| AclWI | GGATC | 1 cut(s) | 268 |
| AcoI | YGGCCR | 2 cut(s) | 692, 753 |
| AcvI | CACGTG | 1 cut(s) | 389 |
| AdeI | CACNNNGTG | 1 cut(s) | 751 |
| AfaI | GTAC | 2 cut(s) | 220, 526 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 283 |
| AgsI | TTSAA | 4 cut(s) | 10, 268, 568, 647 |
| AjnI | CCWGG | 2 cut(s) | 282, 666 |
| AluBI | AGCT | 3 cut(s) | 344, 427, 521 |
| AluI | AGCT | 3 cut(s) | 344, 427, 521 |
| Alw26I | GTCTC | 1 cut(s) | 732 |
| AlwI | GGATC | 1 cut(s) | 268 |
| AoxI | GGCC | 2 cut(s) | 692, 753 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 451, 483 |
| AspS9I | GGNCC | 2 cut(s) | 302, 671 |
| AsuC2I | CCSGG | 1 cut(s) | 298 |
| AsuHPI | GGTGA | 2 cut(s) | 272, 490 |
| AvaII | GGWCC | 2 cut(s) | 302, 671 |
| BaeGI | GKGCMC | 1 cut(s) | 718 |
| BbrPI | CACGTG | 1 cut(s) | 389 |
| BccI | CCATC | 3 cut(s) | 319, 664, 671 |
| BciT130I | CCWGG | 2 cut(s) | 284, 668 |
| BclI | TGATCA | 1 cut(s) | 489 |
| BcnI | CCSGG | 1 cut(s) | 298 |
| BcoDI | GTCTC | 1 cut(s) | 732 |
| BfaI | CTAG | 2 cut(s) | 365, 719 |
| BisI | GCNGC | 1 cut(s) | 228 |
| BlsI | GCNGC | 1 cut(s) | 229 |
| Bme1390I | CCNGG | 3 cut(s) | 284, 298, 668 |
| Bme18I | GGWCC | 2 cut(s) | 302, 671 |
| BmgT120I | GGNCC | 2 cut(s) | 302, 671 |
| BmiI | GGNNCC | 3 cut(s) | 78, 303, 672 |
| BmrFI | CCNGG | 3 cut(s) | 284, 298, 668 |
| BmsI | GCATC | 2 cut(s) | 106, 428 |
| BpmI | CTGGAG | 1 cut(s) | 165 |
| Bpu10I | CCTNAGC | 1 cut(s) | 278 |
| BpuEI | CTTGAG | 2 cut(s) | 530, 694 |
| BpuMI | CCSGG | 1 cut(s) | 298 |
| BsaAI | YACGTR | 2 cut(s) | 204, 389 |
| BsaJI | CCNNGG | 5 cut(s) | 245, 297, 573, 666, 667 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 283 |
| Bse118I | RCCGGY | 1 cut(s) | 755 |
| Bse1I | ACTGG | 2 cut(s) | 166, 771 |
| BseBI | CCWGG | 2 cut(s) | 284, 668 |
| BseDI | CCNNGG | 5 cut(s) | 245, 297, 573, 666, 667 |
| BseGI | GGATG | 1 cut(s) | 656 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseNI | ACTGG | 2 cut(s) | 166, 771 |
| BseRI | GAGGAG | 1 cut(s) | 744 |
| BseSI | GKGCMC | 1 cut(s) | 718 |
| BsgI | GTGCAG | 1 cut(s) | 591 |
| BshFI | GGCC | 2 cut(s) | 694, 755 |
| BsiSI | CCGG | 4 cut(s) | 85, 297, 691, 756 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BsmAI | GTCTC | 1 cut(s) | 732 |
| BsmBI | CGTCTC | 1 cut(s) | 732 |
| BsmI | GAATGC | 2 cut(s) | 598, 687 |
| BsnI | GGCC | 2 cut(s) | 694, 755 |
| Bsp1286I | GDGCHC | 1 cut(s) | 718 |
| Bsp143I | GATC | 3 cut(s) | 273, 489, 742 |
| Bsp19I | CCATGG | 1 cut(s) | 245 |
| BspACI | CCGC | 3 cut(s) | 119, 193, 227 |
| BspANI | GGCC | 2 cut(s) | 694, 755 |
| BspLI | GGNNCC | 3 cut(s) | 78, 303, 672 |
| BspPI | GGATC | 1 cut(s) | 268 |
| BsrFI | RCCGGY | 1 cut(s) | 755 |
| BsrI | ACTGG | 2 cut(s) | 166, 771 |
| BssAI | RCCGGY | 1 cut(s) | 755 |
| BssECI | CCNNGG | 5 cut(s) | 245, 297, 573, 666, 667 |
| BssMI | GATC | 3 cut(s) | 273, 489, 742 |
| BssT1I | CCWWGG | 2 cut(s) | 245, 573 |
| Bst2UI | CCWGG | 2 cut(s) | 284, 668 |
| Bst4CI | ACNGT | 4 cut(s) | 44, 234, 260, 784 |
| Bst6I | CTCTTC | 2 cut(s) | 65, 730 |
| BstBAI | YACGTR | 2 cut(s) | 204, 389 |
| BstC8I | GCNNGC | 1 cut(s) | 429 |
| BstDEI | CTNAG | 1 cut(s) | 278 |
| BstDSI | CCRYGG | 1 cut(s) | 245 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 281 |
| BstF5I | GGATG | 1 cut(s) | 656 |
| BstKTI | GATC | 3 cut(s) | 276, 492, 745 |
| BstMAI | GTCTC | 1 cut(s) | 732 |
| BstMBI | GATC | 3 cut(s) | 273, 489, 742 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 185, 326, 691 |
| BstNI | CCWGG | 2 cut(s) | 284, 668 |
| BstSCI | CCNGG | 3 cut(s) | 282, 296, 666 |
| BstSLI | GKGCMC | 1 cut(s) | 718 |
| BstX2I | RGATCY | 1 cut(s) | 273 |
| BstYI | RGATCY | 1 cut(s) | 273 |
| BsuRI | GGCC | 2 cut(s) | 694, 755 |
| BtgI | CCRYGG | 1 cut(s) | 245 |
| BtsCI | GGATG | 1 cut(s) | 656 |
| BtsI | GCAGTG | 2 cut(s) | 174, 461 |
| BtsIMutI | CAGTG | 6 cut(s) | 159, 174, 239, 461, 764, 789 |
| Cac8I | GCNNGC | 1 cut(s) | 429 |
| Cfr10I | RCCGGY | 1 cut(s) | 755 |
| Cfr13I | GGNCC | 2 cut(s) | 302, 671 |
| CseI | GACGC | 1 cut(s) | 711 |
| Csp6I | GTAC | 2 cut(s) | 219, 525 |
| CviAII | CATG | 3 cut(s) | 47, 246, 748 |
| CviQI | GTAC | 2 cut(s) | 219, 525 |
| DdeI | CTNAG | 1 cut(s) | 278 |
| DpnI | GATC | 3 cut(s) | 275, 491, 744 |
| DpnII | GATC | 3 cut(s) | 273, 489, 742 |
| DraIII | CACNNNGTG | 1 cut(s) | 751 |
| EaeI | YGGCCR | 2 cut(s) | 692, 753 |
| Eam1104I | CTCTTC | 2 cut(s) | 65, 730 |
| EarI | CTCTTC | 2 cut(s) | 65, 730 |
| Eco130I | CCWWGG | 2 cut(s) | 245, 573 |
| Eco47I | GGWCC | 2 cut(s) | 302, 671 |
| Eco72I | CACGTG | 1 cut(s) | 389 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 281 |
| EcoO109I | RGGNCCY | 1 cut(s) | 302 |
| EcoRII | CCWGG | 2 cut(s) | 282, 666 |
| EcoT14I | CCWWGG | 2 cut(s) | 245, 573 |
| ErhI | CCWWGG | 2 cut(s) | 245, 573 |
| Esp3I | CGTCTC | 1 cut(s) | 732 |
| FaeI | CATG | 3 cut(s) | 50, 249, 751 |
| FatI | CATG | 3 cut(s) | 46, 245, 747 |
| FbaI | TGATCA | 1 cut(s) | 489 |
| FblI | GTMKAC | 1 cut(s) | 241 |
| Fnu4HI | GCNGC | 1 cut(s) | 228 |
| FokI | GGATG | 1 cut(s) | 643 |
| Fsp4HI | GCNGC | 1 cut(s) | 228 |
| FspBI | CTAG | 2 cut(s) | 365, 719 |
| GluI | GCNGC | 1 cut(s) | 228 |
| GsuI | CTGGAG | 1 cut(s) | 165 |
| HaeIII | GGCC | 2 cut(s) | 694, 755 |
| HapII | CCGG | 4 cut(s) | 85, 297, 691, 756 |
| HgaI | GACGC | 1 cut(s) | 711 |
| Hin1II | CATG | 3 cut(s) | 50, 249, 751 |
| HinfI | GANTC | 7 cut(s) | 156, 165, 208, 383, 414, 533, 790 |
| HpaII | CCGG | 4 cut(s) | 85, 297, 691, 756 |
| HphI | GGTGA | 2 cut(s) | 272, 490 |
| Hpy166II | GTNNAC | 2 cut(s) | 242, 459 |
| Hpy188I | TCNGA | 2 cut(s) | 619, 780 |
| Hpy188III | TCNNGA | 3 cut(s) | 418, 674, 726 |
| Hpy8I | GTNNAC | 2 cut(s) | 242, 459 |
| HpyAV | CCTTC | 1 cut(s) | 402 |
| HpyCH4III | ACNGT | 4 cut(s) | 44, 234, 260, 784 |
| HpyCH4IV | ACGT | 2 cut(s) | 203, 388 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 596, 608, 652 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 185, 326, 691 |
| HpyF3I | CTNAG | 1 cut(s) | 278 |
| HpySE526I | ACGT | 2 cut(s) | 203, 388 |
| Hsp92II | CATG | 3 cut(s) | 50, 249, 751 |
| Ksp22I | TGATCA | 1 cut(s) | 489 |
| Kzo9I | GATC | 3 cut(s) | 273, 489, 742 |
| LweI | GCATC | 2 cut(s) | 106, 428 |
| MaeI | CTAG | 2 cut(s) | 365, 719 |
| MaeII | ACGT | 2 cut(s) | 203, 388 |
| MaeIII | GTNAC | 1 cut(s) | 260 |
| MalI | GATC | 3 cut(s) | 275, 491, 744 |
| MboI | GATC | 3 cut(s) | 273, 489, 742 |
| MboII | GAAGA | 3 cut(s) | 47, 52, 747 |
| MflI | RGATCY | 1 cut(s) | 273 |
| MhlI | GDGCHC | 1 cut(s) | 718 |
| MluCI | AATT | 1 cut(s) | 466 |
| MlyI | GAGTC | 1 cut(s) | 423 |
| MmeI | TCCRAC | 1 cut(s) | 758 |
| MnlI | CCTC | 7 cut(s) | 67, 115, 315, 444, 469, 722, 725 |
| MseI | TTAA | 2 cut(s) | 105, 771 |
| MslI | CAYNNNNRTG | 1 cut(s) | 114 |
| MspI | CCGG | 4 cut(s) | 85, 297, 691, 756 |
| MspR9I | CCNGG | 3 cut(s) | 284, 298, 668 |
| Mva1269I | GAATGC | 2 cut(s) | 598, 687 |
| MvaI | CCWGG | 2 cut(s) | 284, 668 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 185, 326, 691 |
| NciI | CCSGG | 1 cut(s) | 298 |
| NcoI | CCATGG | 1 cut(s) | 245 |
| NdeII | GATC | 3 cut(s) | 273, 489, 742 |
| NlaIII | CATG | 3 cut(s) | 50, 249, 751 |
| NlaIV | GGNNCC | 3 cut(s) | 78, 303, 672 |
| NmuCI | GTSAC | 1 cut(s) | 260 |
| PasI | CCCWGGG | 1 cut(s) | 667 |
| PctI | GAATGC | 2 cut(s) | 598, 687 |
| PfeI | GAWTC | 6 cut(s) | 156, 165, 208, 383, 533, 790 |
| PkrI | GCNGC | 1 cut(s) | 229 |
| PleI | GAGTC | 1 cut(s) | 422 |
| PmaCI | CACGTG | 1 cut(s) | 389 |
| PmlI | CACGTG | 1 cut(s) | 389 |
| PpsI | GAGTC | 1 cut(s) | 422 |
| Ppu21I | YACGTR | 2 cut(s) | 204, 389 |
| PpuMI | RGGWCCY | 1 cut(s) | 302 |
| PsiI | TTATAA | 1 cut(s) | 557 |
| Psp5II | RGGWCCY | 1 cut(s) | 302 |
| Psp6I | CCWGG | 2 cut(s) | 282, 666 |
| PspCI | CACGTG | 1 cut(s) | 389 |
| PspGI | CCWGG | 2 cut(s) | 282, 666 |
| PspN4I | GGNNCC | 3 cut(s) | 78, 303, 672 |
| PspPI | GGNCC | 2 cut(s) | 302, 671 |
| PspPPI | RGGWCCY | 1 cut(s) | 302 |
| PsuI | RGATCY | 1 cut(s) | 273 |
| RsaI | GTAC | 2 cut(s) | 220, 526 |
| RsaNI | GTAC | 2 cut(s) | 219, 525 |
| RseI | CAYNNNNRTG | 1 cut(s) | 114 |
| SaqAI | TTAA | 2 cut(s) | 105, 771 |
| SatI | GCNGC | 1 cut(s) | 228 |
| Sau3AI | GATC | 3 cut(s) | 273, 489, 742 |
| Sau96I | GGNCC | 2 cut(s) | 302, 671 |
| SchI | GAGTC | 1 cut(s) | 423 |
| ScrFI | CCNGG | 3 cut(s) | 284, 298, 668 |
| SduI | GDGCHC | 1 cut(s) | 718 |
| SfaNI | GCATC | 2 cut(s) | 106, 428 |
| SinI | GGWCC | 2 cut(s) | 302, 671 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 114 |
| SmlI | CTYRAG | 2 cut(s) | 545, 709 |
| SmoI | CTYRAG | 2 cut(s) | 545, 709 |
| Sse9I | AATT | 1 cut(s) | 466 |
| SsiI | CCGC | 3 cut(s) | 119, 193, 227 |
| SspMI | CTAG | 2 cut(s) | 365, 719 |
| StyD4I | CCNGG | 3 cut(s) | 282, 296, 666 |
| StyI | CCWWGG | 2 cut(s) | 245, 573 |
| TaaI | ACNGT | 4 cut(s) | 44, 234, 260, 784 |
| TaiI | ACGT | 2 cut(s) | 206, 391 |
| TaqI | TCGA | 1 cut(s) | 154 |
| TasI | AATT | 1 cut(s) | 466 |
| TauI | GCSGC | 1 cut(s) | 230 |
| TfiI | GAWTC | 6 cut(s) | 156, 165, 208, 383, 533, 790 |
| Tru1I | TTAA | 2 cut(s) | 105, 771 |
| Tru9I | TTAA | 2 cut(s) | 105, 771 |
| TscAI | CASTG | 6 cut(s) | 166, 181, 239, 461, 771, 789 |
| TseFI | GTSAC | 1 cut(s) | 260 |
| Tsp45I | GTSAC | 1 cut(s) | 260 |
| TspDTI | ATGAA | 1 cut(s) | 605 |
| TspGWI | ACGGA | 1 cut(s) | 91 |
| TspRI | CASTG | 6 cut(s) | 166, 181, 239, 461, 771, 789 |
| VpaK11BI | GGWCC | 2 cut(s) | 302, 671 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 281 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 674 |
| XmiI | GTMKAC | 1 cut(s) | 241 |
| XspI | CTAG | 2 cut(s) | 365, 719 |