ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 22 - 149 | 8.3e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 389, 392, 452 |
| AfaI | GTAC | 1 cut(s) | 316 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 48 |
| AgsI | TTSAA | 2 cut(s) | 65, 521 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 34 |
| AluBI | AGCT | 3 cut(s) | 127, 148, 611 |
| AluI | AGCT | 3 cut(s) | 127, 148, 611 |
| Alw26I | GTCTC | 3 cut(s) | 22, 192, 272 |
| AoxI | GGCC | 4 cut(s) | 179, 248, 320, 435 |
| ApaI | GGGCCC | 1 cut(s) | 324 |
| AseI | ATTAAT | 1 cut(s) | 378 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 399 |
| AspS9I | GGNCC | 6 cut(s) | 179, 320, 321, 344, 435, 592 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 254 |
| AvaII | GGWCC | 2 cut(s) | 344, 592 |
| BaeGI | GKGCMC | 3 cut(s) | 54, 177, 324 |
| BanII | GRGCYC | 1 cut(s) | 324 |
| BccI | CCATC | 1 cut(s) | 248 |
| BciVI | GTATCC | 1 cut(s) | 421 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcoDI | GTCTC | 3 cut(s) | 22, 192, 272 |
| BfaI | CTAG | 2 cut(s) | 455, 612 |
| BfmI | CTRYAG | 1 cut(s) | 106 |
| BfuI | GTATCC | 1 cut(s) | 421 |
| BisI | GCNGC | 1 cut(s) | 390 |
| BlsI | GCNGC | 1 cut(s) | 391 |
| Bme18I | GGWCC | 2 cut(s) | 344, 592 |
| BmgT120I | GGNCC | 6 cut(s) | 179, 320, 321, 344, 435, 592 |
| BmiI | GGNNCC | 4 cut(s) | 40, 321, 322, 593 |
| BmsI | GCATC | 1 cut(s) | 228 |
| Bpu10I | CCTNAGC | 1 cut(s) | 128 |
| BsaI | GGTCTC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 1 cut(s) | 182 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 296, 326, 563, 593 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 48 |
| Bse1I | ACTGG | 1 cut(s) | 103 |
| Bse3DI | GCAATG | 1 cut(s) | 592 |
| BseDI | CCNNGG | 1 cut(s) | 182 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 48 |
| BseMI | GCAATG | 1 cut(s) | 592 |
| BseMII | CTCAG | 1 cut(s) | 142 |
| BseNI | ACTGG | 1 cut(s) | 103 |
| BseSI | GKGCMC | 3 cut(s) | 54, 177, 324 |
| BsgI | GTGCAG | 1 cut(s) | 587 |
| BshFI | GGCC | 4 cut(s) | 181, 250, 322, 437 |
| BslFI | GGGAC | 2 cut(s) | 498, 605 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 48 |
| BsmAI | GTCTC | 3 cut(s) | 22, 192, 272 |
| BsmFI | GGGAC | 2 cut(s) | 498, 605 |
| BsnI | GGCC | 4 cut(s) | 181, 250, 322, 437 |
| Bso31I | GGTCTC | 1 cut(s) | 22 |
| Bsp120I | GGGCCC | 1 cut(s) | 320 |
| Bsp1286I | GDGCHC | 3 cut(s) | 54, 177, 324 |
| Bsp143I | GATC | 1 cut(s) | 442 |
| Bsp19I | CCATGG | 1 cut(s) | 182 |
| BspACI | CCGC | 3 cut(s) | 389, 392, 452 |
| BspANI | GGCC | 4 cut(s) | 181, 250, 322, 437 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspHI | TCATGA | 1 cut(s) | 412 |
| BspLI | GGNNCC | 4 cut(s) | 40, 321, 322, 593 |
| BspTNI | GGTCTC | 1 cut(s) | 22 |
| BsrDI | GCAATG | 1 cut(s) | 592 |
| BsrI | ACTGG | 1 cut(s) | 103 |
| BssECI | CCNNGG | 1 cut(s) | 182 |
| BssMI | GATC | 1 cut(s) | 442 |
| BssT1I | CCWWGG | 1 cut(s) | 182 |
| Bst4CI | ACNGT | 4 cut(s) | 33, 156, 293, 489 |
| Bst6I | CTCTTC | 1 cut(s) | 332 |
| BstC8I | GCNNGC | 1 cut(s) | 476 |
| BstDEI | CTNAG | 3 cut(s) | 128, 215, 352 |
| BstDSI | CCRYGG | 1 cut(s) | 182 |
| BstKTI | GATC | 1 cut(s) | 445 |
| BstMAI | GTCTC | 3 cut(s) | 22, 192, 272 |
| BstMBI | GATC | 1 cut(s) | 442 |
| BstSFI | CTRYAG | 1 cut(s) | 106 |
| BstSLI | GKGCMC | 3 cut(s) | 54, 177, 324 |
| BsuI | GTATCC | 1 cut(s) | 421 |
| BsuRI | GGCC | 4 cut(s) | 181, 250, 322, 437 |
| BtgI | CCRYGG | 1 cut(s) | 182 |
| BtsIMutI | CAGTG | 2 cut(s) | 222, 494 |
| Cac8I | GCNNGC | 1 cut(s) | 476 |
| CciI | TCATGA | 1 cut(s) | 412 |
| Cfr13I | GGNCC | 6 cut(s) | 179, 320, 321, 344, 435, 592 |
| CseI | GACGC | 1 cut(s) | 536 |
| Csp6I | GTAC | 1 cut(s) | 315 |
| CviAII | CATG | 4 cut(s) | 183, 413, 422, 630 |
| CviJI | RGCY | 9 cut(s) | 127, 148, 181, 250, 322, 437, 474, 611, 635 |
| CviKI_1 | RGCY | 9 cut(s) | 127, 148, 181, 250, 322, 437, 474, 611, 635 |
| CviQI | GTAC | 1 cut(s) | 315 |
| DdeI | CTNAG | 3 cut(s) | 128, 215, 352 |
| DpnI | GATC | 1 cut(s) | 444 |
| DpnII | GATC | 1 cut(s) | 442 |
| Eam1104I | CTCTTC | 1 cut(s) | 332 |
| EarI | CTCTTC | 1 cut(s) | 332 |
| EciI | GGCGGA | 1 cut(s) | 407 |
| Eco130I | CCWWGG | 1 cut(s) | 182 |
| Eco24I | GRGCYC | 1 cut(s) | 324 |
| Eco31I | GGTCTC | 1 cut(s) | 22 |
| Eco47I | GGWCC | 2 cut(s) | 344, 592 |
| EcoO109I | RGGNCCY | 5 cut(s) | 320, 321, 344, 435, 592 |
| EcoT14I | CCWWGG | 1 cut(s) | 182 |
| EcoT38I | GRGCYC | 1 cut(s) | 324 |
| ErhI | CCWWGG | 1 cut(s) | 182 |
| FaeI | CATG | 4 cut(s) | 186, 416, 425, 633 |
| FaiI | YATR | 8 cut(s) | 75, 108, 184, 267, 414, 423, 447, 631 |
| FaqI | GGGAC | 2 cut(s) | 498, 605 |
| FatI | CATG | 4 cut(s) | 182, 412, 421, 629 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 1 cut(s) | 390 |
| FriOI | GRGCYC | 1 cut(s) | 324 |
| Fsp4HI | GCNGC | 1 cut(s) | 390 |
| FspBI | CTAG | 2 cut(s) | 455, 612 |
| GluI | GCNGC | 1 cut(s) | 390 |
| HaeIII | GGCC | 4 cut(s) | 181, 250, 322, 437 |
| HgaI | GACGC | 1 cut(s) | 536 |
| Hin1II | CATG | 4 cut(s) | 186, 416, 425, 633 |
| HinfI | GANTC | 3 cut(s) | 13, 112, 262 |
| HphI | GGTGA | 2 cut(s) | 37, 254 |
| Hpy166II | GTNNAC | 1 cut(s) | 315 |
| Hpy188I | TCNGA | 2 cut(s) | 92, 442 |
| Hpy188III | TCNNGA | 4 cut(s) | 116, 275, 383, 413 |
| Hpy8I | GTNNAC | 1 cut(s) | 315 |
| Hpy99I | CGWCG | 1 cut(s) | 530 |
| HpyAV | CCTTC | 2 cut(s) | 464, 507 |
| HpyCH4III | ACNGT | 4 cut(s) | 33, 156, 293, 489 |
| HpyCH4V | TGCA | 4 cut(s) | 301, 478, 568, 640 |
| HpyF3I | CTNAG | 3 cut(s) | 128, 215, 352 |
| Hsp92II | CATG | 4 cut(s) | 186, 416, 425, 633 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 1 cut(s) | 442 |
| LmnI | GCTCC | 1 cut(s) | 145 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeI | CTAG | 2 cut(s) | 455, 612 |
| MaeIII | GTNAC | 1 cut(s) | 94 |
| MalI | GATC | 1 cut(s) | 444 |
| MboI | GATC | 1 cut(s) | 442 |
| MboII | GAAGA | 3 cut(s) | 22, 349, 522 |
| MhlI | GDGCHC | 3 cut(s) | 54, 177, 324 |
| MluCI | AATT | 1 cut(s) | 521 |
| MnlI | CCTC | 8 cut(s) | 52, 74, 240, 298, 335, 409, 448, 495 |
| MroXI | GAANNNNTTC | 1 cut(s) | 399 |
| MseI | TTAA | 3 cut(s) | 204, 378, 620 |
| MslI | CAYNNNNRTG | 1 cut(s) | 57 |
| NcoI | CCATGG | 1 cut(s) | 182 |
| NdeII | GATC | 1 cut(s) | 442 |
| NlaIII | CATG | 4 cut(s) | 186, 416, 425, 633 |
| NlaIV | GGNNCC | 4 cut(s) | 40, 321, 322, 593 |
| PagI | TCATGA | 1 cut(s) | 412 |
| PdmI | GAANNNNTTC | 1 cut(s) | 399 |
| PfeI | GAWTC | 3 cut(s) | 13, 112, 262 |
| PkrI | GCNGC | 1 cut(s) | 391 |
| PpuMI | RGGWCCY | 2 cut(s) | 344, 592 |
| PshBI | ATTAAT | 1 cut(s) | 378 |
| Psp5II | RGGWCCY | 2 cut(s) | 344, 592 |
| PspN4I | GGNNCC | 4 cut(s) | 40, 321, 322, 593 |
| PspOMI | GGGCCC | 1 cut(s) | 320 |
| PspPI | GGNCC | 6 cut(s) | 179, 320, 321, 344, 435, 592 |
| PspPPI | RGGWCCY | 2 cut(s) | 344, 592 |
| RsaI | GTAC | 1 cut(s) | 316 |
| RsaNI | GTAC | 1 cut(s) | 315 |
| RseI | CAYNNNNRTG | 1 cut(s) | 57 |
| SaqAI | TTAA | 3 cut(s) | 204, 378, 620 |
| SatI | GCNGC | 1 cut(s) | 390 |
| Sau3AI | GATC | 1 cut(s) | 442 |
| Sau96I | GGNCC | 6 cut(s) | 179, 320, 321, 344, 435, 592 |
| SduI | GDGCHC | 3 cut(s) | 54, 177, 324 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SfcI | CTRYAG | 1 cut(s) | 106 |
| SinI | GGWCC | 2 cut(s) | 344, 592 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 57 |
| Sse9I | AATT | 1 cut(s) | 521 |
| SsiI | CCGC | 3 cut(s) | 389, 392, 452 |
| SspMI | CTAG | 2 cut(s) | 455, 612 |
| StyI | CCWWGG | 1 cut(s) | 182 |
| TaaI | ACNGT | 4 cut(s) | 33, 156, 293, 489 |
| TaqI | TCGA | 1 cut(s) | 525 |
| TasI | AATT | 1 cut(s) | 521 |
| TauI | GCSGC | 1 cut(s) | 392 |
| TfiI | GAWTC | 3 cut(s) | 13, 112, 262 |
| Tru1I | TTAA | 3 cut(s) | 204, 378, 620 |
| Tru9I | TTAA | 3 cut(s) | 204, 378, 620 |
| TscAI | CASTG | 2 cut(s) | 229, 494 |
| TspDTI | ATGAA | 7 cut(s) | 153, 222, 254, 364, 401, 410, 618 |
| TspGWI | ACGGA | 1 cut(s) | 592 |
| TspRI | CASTG | 2 cut(s) | 229, 494 |
| VpaK11BI | GGWCC | 2 cut(s) | 344, 592 |
| VspI | ATTAAT | 1 cut(s) | 378 |
| XmnI | GAANNNNTTC | 1 cut(s) | 399 |
| XspI | CTAG | 2 cut(s) | 455, 612 |