ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 198 | 2.1e-16 | Endonuclease/Exonuclease/phosphatase family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 587 |
| AciI | CCGC | 4 cut(s) | 41, 134, 374, 599 |
| AcsI | RAATTY | 1 cut(s) | 521 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 91, 339 |
| AgsI | TTSAA | 1 cut(s) | 281 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 107, 139, 212, 244 |
| AluBI | AGCT | 4 cut(s) | 15, 337, 358, 429 |
| AluI | AGCT | 4 cut(s) | 15, 337, 358, 429 |
| Alw26I | GTCTC | 1 cut(s) | 323 |
| ApoI | RAATTY | 1 cut(s) | 521 |
| AspS9I | GGNCC | 2 cut(s) | 389, 459 |
| AsuHPI | GGTGA | 1 cut(s) | 394 |
| AvaII | GGWCC | 2 cut(s) | 389, 459 |
| BccI | CCATC | 2 cut(s) | 97, 124 |
| BcoDI | GTCTC | 1 cut(s) | 323 |
| BfaI | CTAG | 2 cut(s) | 152, 563 |
| BisI | GCNGC | 2 cut(s) | 375, 600 |
| BlsI | GCNGC | 2 cut(s) | 376, 601 |
| Bme18I | GGWCC | 2 cut(s) | 389, 459 |
| BmgT120I | GGNCC | 2 cut(s) | 389, 459 |
| BmiI | GGNNCC | 2 cut(s) | 38, 323 |
| BmrI | ACTGGG | 1 cut(s) | 195 |
| BmsI | GCATC | 1 cut(s) | 155 |
| BmuI | ACTGGG | 1 cut(s) | 195 |
| BpuEI | CTTGAG | 1 cut(s) | 240 |
| BsaI | GGTCTC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 2 cut(s) | 392, 462 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 91, 339 |
| Bse1I | ACTGG | 2 cut(s) | 190, 313 |
| BseDI | CCNNGG | 2 cut(s) | 392, 462 |
| BseGI | GGATG | 1 cut(s) | 170 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 91, 339 |
| BseMII | CTCAG | 1 cut(s) | 426 |
| BseNI | ACTGG | 2 cut(s) | 190, 313 |
| BseYI | CCCAGC | 1 cut(s) | 333 |
| BsgI | GTGCAG | 1 cut(s) | 44 |
| BslFI | GGGAC | 1 cut(s) | 480 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 91, 339 |
| BsmAI | GTCTC | 1 cut(s) | 323 |
| BsmFI | GGGAC | 1 cut(s) | 480 |
| Bso31I | GGTCTC | 1 cut(s) | 323 |
| BspACI | CCGC | 4 cut(s) | 41, 134, 374, 599 |
| BspCNI | CTCAG | 1 cut(s) | 427 |
| BspHI | TCATGA | 1 cut(s) | 592 |
| BspLI | GGNNCC | 2 cut(s) | 38, 323 |
| BspQI | GCTCTTC | 1 cut(s) | 436 |
| BspTNI | GGTCTC | 1 cut(s) | 323 |
| BsrI | ACTGG | 2 cut(s) | 190, 313 |
| BssECI | CCNNGG | 2 cut(s) | 392, 462 |
| BssT1I | CCWWGG | 1 cut(s) | 462 |
| Bst4CI | ACNGT | 2 cut(s) | 366, 382 |
| Bst6I | CTCTTC | 2 cut(s) | 436, 542 |
| BstDEI | CTNAG | 2 cut(s) | 425, 435 |
| BstDSI | CCRYGG | 1 cut(s) | 392 |
| BstF5I | GGATG | 1 cut(s) | 170 |
| BstMAI | GTCTC | 1 cut(s) | 323 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 568 |
| BtgI | CCRYGG | 1 cut(s) | 392 |
| BtsCI | GGATG | 1 cut(s) | 170 |
| BtsI | GCAGTG | 1 cut(s) | 175 |
| BtsIMutI | CAGTG | 2 cut(s) | 175, 306 |
| CciI | TCATGA | 1 cut(s) | 592 |
| Cfr13I | GGNCC | 2 cut(s) | 389, 459 |
| CviAII | CATG | 2 cut(s) | 551, 593 |
| CviJI | RGCY | 7 cut(s) | 15, 209, 337, 358, 429, 491, 571 |
| CviKI_1 | RGCY | 7 cut(s) | 15, 209, 337, 358, 429, 491, 571 |
| DdeI | CTNAG | 2 cut(s) | 425, 435 |
| Eam1104I | CTCTTC | 2 cut(s) | 436, 542 |
| EarI | CTCTTC | 2 cut(s) | 436, 542 |
| EciI | GGCGGA | 1 cut(s) | 149 |
| Eco130I | CCWWGG | 1 cut(s) | 462 |
| Eco31I | GGTCTC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 2 cut(s) | 389, 459 |
| EcoT14I | CCWWGG | 1 cut(s) | 462 |
| ErhI | CCWWGG | 1 cut(s) | 462 |
| FaeI | CATG | 2 cut(s) | 554, 596 |
| FaiI | YATR | 7 cut(s) | 264, 266, 318, 401, 552, 587, 594 |
| FaqI | GGGAC | 1 cut(s) | 480 |
| FatI | CATG | 2 cut(s) | 550, 592 |
| FauI | CCCGC | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 2 cut(s) | 375, 600 |
| FokI | GGATG | 1 cut(s) | 177 |
| Fsp4HI | GCNGC | 2 cut(s) | 375, 600 |
| FspBI | CTAG | 2 cut(s) | 152, 563 |
| GluI | GCNGC | 2 cut(s) | 375, 600 |
| GsaI | CCCAGC | 1 cut(s) | 337 |
| Hin1II | CATG | 2 cut(s) | 554, 596 |
| HinfI | GANTC | 4 cut(s) | 248, 277, 303, 529 |
| HphI | GGTGA | 1 cut(s) | 394 |
| Hpy166II | GTNNAC | 1 cut(s) | 533 |
| Hpy188I | TCNGA | 2 cut(s) | 407, 436 |
| Hpy188III | TCNNGA | 3 cut(s) | 100, 245, 593 |
| Hpy8I | GTNNAC | 1 cut(s) | 533 |
| HpyAV | CCTTC | 1 cut(s) | 80 |
| HpyCH4III | ACNGT | 2 cut(s) | 366, 382 |
| HpyCH4IV | ACGT | 1 cut(s) | 516 |
| HpyCH4V | TGCA | 4 cut(s) | 25, 168, 475, 511 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 568 |
| HpyF3I | CTNAG | 2 cut(s) | 425, 435 |
| HpySE526I | ACGT | 1 cut(s) | 516 |
| Hsp92II | CATG | 2 cut(s) | 554, 596 |
| LguI | GCTCTTC | 1 cut(s) | 436 |
| LmnI | GCTCC | 1 cut(s) | 355 |
| LpnPI | CCDG | 8 cut(s) | 11, 171, 230, 294, 339, 347, 497, 557 |
| LweI | GCATC | 1 cut(s) | 155 |
| MaeI | CTAG | 2 cut(s) | 152, 563 |
| MaeII | ACGT | 1 cut(s) | 516 |
| MaeIII | GTNAC | 2 cut(s) | 304, 420 |
| MboII | GAAGA | 5 cut(s) | 127, 243, 423, 451, 529 |
| MluCI | AATT | 3 cut(s) | 122, 344, 521 |
| MlyI | GAGTC | 2 cut(s) | 312, 538 |
| MmeI | TCCRAC | 2 cut(s) | 157, 197 |
| MnlI | CCTC | 7 cut(s) | 194, 252, 280, 471, 477, 481, 561 |
| MseI | TTAA | 5 cut(s) | 59, 147, 414, 495, 622 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MspA1I | CMGCKG | 1 cut(s) | 15 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 568 |
| NlaIII | CATG | 2 cut(s) | 554, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 38, 323 |
| NmuCI | GTSAC | 1 cut(s) | 304 |
| PagI | TCATGA | 1 cut(s) | 592 |
| PciSI | GCTCTTC | 1 cut(s) | 436 |
| PfeI | GAWTC | 2 cut(s) | 248, 277 |
| PkrI | GCNGC | 2 cut(s) | 376, 601 |
| PleI | GAGTC | 2 cut(s) | 311, 537 |
| PpsI | GAGTC | 2 cut(s) | 311, 537 |
| PsiI | TTATAA | 1 cut(s) | 587 |
| PspFI | CCCAGC | 1 cut(s) | 333 |
| PspN4I | GGNNCC | 2 cut(s) | 38, 323 |
| PspPI | GGNCC | 2 cut(s) | 389, 459 |
| PvuII | CAGCTG | 1 cut(s) | 15 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SapI | GCTCTTC | 1 cut(s) | 436 |
| SaqAI | TTAA | 5 cut(s) | 59, 147, 414, 495, 622 |
| SatI | GCNGC | 2 cut(s) | 375, 600 |
| Sau96I | GGNCC | 2 cut(s) | 389, 459 |
| SchI | GAGTC | 2 cut(s) | 312, 538 |
| SfaNI | GCATC | 1 cut(s) | 155 |
| SinI | GGWCC | 2 cut(s) | 389, 459 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| SmlI | CTYRAG | 1 cut(s) | 255 |
| SmoI | CTYRAG | 1 cut(s) | 255 |
| Sse9I | AATT | 3 cut(s) | 122, 344, 521 |
| SsiI | CCGC | 4 cut(s) | 41, 134, 374, 599 |
| SspMI | CTAG | 2 cut(s) | 152, 563 |
| StyI | CCWWGG | 1 cut(s) | 462 |
| TaaI | ACNGT | 2 cut(s) | 366, 382 |
| TaiI | ACGT | 1 cut(s) | 519 |
| TaqI | TCGA | 1 cut(s) | 527 |
| TasI | AATT | 3 cut(s) | 122, 344, 521 |
| TauI | GCSGC | 2 cut(s) | 377, 602 |
| TfiI | GAWTC | 2 cut(s) | 248, 277 |
| Tru1I | TTAA | 5 cut(s) | 59, 147, 414, 495, 622 |
| Tru9I | TTAA | 5 cut(s) | 59, 147, 414, 495, 622 |
| TscAI | CASTG | 2 cut(s) | 175, 313 |
| TseFI | GTSAC | 1 cut(s) | 304 |
| Tsp45I | GTSAC | 1 cut(s) | 304 |
| TspDTI | ATGAA | 1 cut(s) | 609 |
| TspGWI | ACGGA | 2 cut(s) | 41, 381 |
| TspRI | CASTG | 2 cut(s) | 175, 313 |
| VpaK11BI | GGWCC | 2 cut(s) | 389, 459 |
| XapI | RAATTY | 1 cut(s) | 521 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 540 |
| XspI | CTAG | 2 cut(s) | 152, 563 |