Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 183 |
| AciI | CCGC | 1 cut(s) | 198 |
| AclWI | GGATC | 3 cut(s) | 64, 408, 421 |
| AcoI | YGGCCR | 1 cut(s) | 319 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 332, 408 |
| AjnI | CCWGG | 1 cut(s) | 390 |
| AluBI | AGCT | 1 cut(s) | 206 |
| AluI | AGCT | 1 cut(s) | 206 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AlwI | GGATC | 3 cut(s) | 64, 408, 421 |
| AoxI | GGCC | 1 cut(s) | 319 |
| ApeKI | GCWGC | 3 cut(s) | 127, 255, 422 |
| AseI | ATTAAT | 1 cut(s) | 264 |
| AspS9I | GGNCC | 1 cut(s) | 281 |
| AsuC2I | CCSGG | 3 cut(s) | 326, 334, 410 |
| AvaII | GGWCC | 1 cut(s) | 281 |
| BamHI | GGATCC | 1 cut(s) | 413 |
| BbvI | GCAGC | 3 cut(s) | 139, 242, 409 |
| BccI | CCATC | 1 cut(s) | 233 |
| BceAI | ACGGC | 1 cut(s) | 334 |
| BciT130I | CCWGG | 1 cut(s) | 392 |
| BcnI | CCSGG | 3 cut(s) | 326, 334, 410 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BisI | GCNGC | 3 cut(s) | 128, 256, 423 |
| BlsI | GCNGC | 3 cut(s) | 129, 257, 424 |
| Bme1390I | CCNGG | 4 cut(s) | 326, 334, 392, 410 |
| Bme18I | GGWCC | 1 cut(s) | 281 |
| BmgT120I | GGNCC | 1 cut(s) | 281 |
| BmiI | GGNNCC | 2 cut(s) | 282, 415 |
| BmrFI | CCNGG | 4 cut(s) | 326, 334, 392, 410 |
| Bpu10I | CCTNAGC | 1 cut(s) | 362 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| BpuMI | CCSGG | 3 cut(s) | 326, 334, 410 |
| BsaJI | CCNNGG | 1 cut(s) | 409 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 332, 408 |
| Bse1I | ACTGG | 2 cut(s) | 133, 313 |
| BseBI | CCWGG | 1 cut(s) | 392 |
| BseDI | CCNNGG | 1 cut(s) | 409 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 332, 408 |
| BseMII | CTCAG | 3 cut(s) | 115, 176, 387 |
| BseNI | ACTGG | 2 cut(s) | 133, 313 |
| BseXI | GCAGC | 3 cut(s) | 139, 242, 409 |
| BsgI | GTGCAG | 1 cut(s) | 100 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| Bsh1285I | CGRYCG | 1 cut(s) | 181 |
| BshFI | GGCC | 1 cut(s) | 321 |
| BsiEI | CGRYCG | 1 cut(s) | 181 |
| BsiSI | CCGG | 3 cut(s) | 326, 333, 409 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 332, 408 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsnI | GGCC | 1 cut(s) | 321 |
| Bsp143I | GATC | 4 cut(s) | 69, 178, 250, 413 |
| BspACI | CCGC | 1 cut(s) | 198 |
| BspANI | GGCC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 3 cut(s) | 114, 175, 386 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspLI | GGNNCC | 2 cut(s) | 282, 415 |
| BspPI | GGATC | 3 cut(s) | 64, 408, 421 |
| BsrI | ACTGG | 2 cut(s) | 133, 313 |
| BssECI | CCNNGG | 1 cut(s) | 409 |
| BssMI | GATC | 4 cut(s) | 69, 178, 250, 413 |
| Bst2UI | CCWGG | 1 cut(s) | 392 |
| Bst4CI | ACNGT | 2 cut(s) | 8, 23 |
| BstC8I | GCNNGC | 1 cut(s) | 196 |
| BstDEI | CTNAG | 4 cut(s) | 101, 162, 362, 373 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstKTI | GATC | 4 cut(s) | 72, 181, 253, 416 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 4 cut(s) | 69, 178, 250, 413 |
| BstMCI | CGRYCG | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 136 |
| BstNI | CCWGG | 1 cut(s) | 392 |
| BstSCI | CCNGG | 4 cut(s) | 324, 332, 390, 408 |
| BstUI | CGCG | 1 cut(s) | 183 |
| BstV1I | GCAGC | 3 cut(s) | 139, 242, 409 |
| BstX2I | RGATCY | 1 cut(s) | 413 |
| BstYI | RGATCY | 1 cut(s) | 413 |
| BsuRI | GGCC | 1 cut(s) | 321 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| BtsI | GCAGTG | 1 cut(s) | 112 |
| BtsIMutI | CAGTG | 1 cut(s) | 112 |
| Cac8I | GCNNGC | 1 cut(s) | 196 |
| Cfr13I | GGNCC | 1 cut(s) | 281 |
| CviAII | CATG | 1 cut(s) | 244 |
| CviJI | RGCY | 5 cut(s) | 86, 206, 321, 367, 390 |
| CviKI_1 | RGCY | 5 cut(s) | 86, 206, 321, 367, 390 |
| DdeI | CTNAG | 4 cut(s) | 101, 162, 362, 373 |
| DpnI | GATC | 4 cut(s) | 71, 180, 252, 415 |
| DpnII | GATC | 4 cut(s) | 69, 178, 250, 413 |
| EaeI | YGGCCR | 1 cut(s) | 319 |
| Eco47I | GGWCC | 1 cut(s) | 281 |
| EcoRII | CCWGG | 1 cut(s) | 390 |
| FaeI | CATG | 1 cut(s) | 247 |
| FaiI | YATR | 4 cut(s) | 54, 245, 420, 427 |
| FatI | CATG | 1 cut(s) | 243 |
| FauI | CCCGC | 1 cut(s) | 191 |
| Fnu4HI | GCNGC | 3 cut(s) | 128, 256, 423 |
| FokI | GGATG | 1 cut(s) | 230 |
| Fsp4HI | GCNGC | 3 cut(s) | 128, 256, 423 |
| GluI | GCNGC | 3 cut(s) | 128, 256, 423 |
| HaeIII | GGCC | 1 cut(s) | 321 |
| HapII | CCGG | 3 cut(s) | 326, 333, 409 |
| Hin1II | CATG | 1 cut(s) | 247 |
| HincII | GTYRAC | 1 cut(s) | 187 |
| HindII | GTYRAC | 1 cut(s) | 187 |
| HinfI | GANTC | 2 cut(s) | 109, 221 |
| HpaII | CCGG | 3 cut(s) | 326, 333, 409 |
| Hpy166II | GTNNAC | 1 cut(s) | 187 |
| Hpy188I | TCNGA | 2 cut(s) | 165, 376 |
| Hpy188III | TCNNGA | 3 cut(s) | 73, 274, 284 |
| Hpy8I | GTNNAC | 1 cut(s) | 187 |
| HpyAV | CCTTC | 3 cut(s) | 271, 371, 412 |
| HpyCH4III | ACNGT | 2 cut(s) | 8, 23 |
| HpyCH4IV | ACGT | 2 cut(s) | 291, 340 |
| HpyCH4V | TGCA | 3 cut(s) | 117, 127, 425 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 136 |
| HpyF3I | CTNAG | 4 cut(s) | 101, 162, 362, 373 |
| HpySE526I | ACGT | 2 cut(s) | 291, 340 |
| Hsp92II | CATG | 1 cut(s) | 247 |
| Kzo9I | GATC | 4 cut(s) | 69, 178, 250, 413 |
| Lsp1109I | GCAGC | 3 cut(s) | 139, 242, 409 |
| MaeII | ACGT | 2 cut(s) | 291, 340 |
| MalI | GATC | 4 cut(s) | 71, 180, 252, 415 |
| MboI | GATC | 4 cut(s) | 69, 178, 250, 413 |
| MflI | RGATCY | 1 cut(s) | 413 |
| MluCI | AATT | 2 cut(s) | 146, 439 |
| MlyI | GAGTC | 2 cut(s) | 103, 215 |
| MnlI | CCTC | 2 cut(s) | 68, 377 |
| MseI | TTAA | 3 cut(s) | 143, 264, 442 |
| MslI | CAYNNNNRTG | 2 cut(s) | 122, 266 |
| MspI | CCGG | 3 cut(s) | 326, 333, 409 |
| MspR9I | CCNGG | 4 cut(s) | 326, 334, 392, 410 |
| MvaI | CCWGG | 1 cut(s) | 392 |
| MvnI | CGCG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 136 |
| NciI | CCSGG | 3 cut(s) | 326, 334, 410 |
| NdeII | GATC | 4 cut(s) | 69, 178, 250, 413 |
| NlaIII | CATG | 1 cut(s) | 247 |
| NlaIV | GGNNCC | 2 cut(s) | 282, 415 |
| PkrI | GCNGC | 3 cut(s) | 129, 257, 424 |
| Ple19I | CGATCG | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 103, 215 |
| PpsI | GAGTC | 2 cut(s) | 103, 215 |
| PshBI | ATTAAT | 1 cut(s) | 264 |
| Psp6I | CCWGG | 1 cut(s) | 390 |
| PspGI | CCWGG | 1 cut(s) | 390 |
| PspN4I | GGNNCC | 2 cut(s) | 282, 415 |
| PspPI | GGNCC | 1 cut(s) | 281 |
| PsuI | RGATCY | 1 cut(s) | 413 |
| PvuI | CGATCG | 1 cut(s) | 181 |
| RseI | CAYNNNNRTG | 2 cut(s) | 122, 266 |
| SaqAI | TTAA | 3 cut(s) | 143, 264, 442 |
| SatI | GCNGC | 3 cut(s) | 128, 256, 423 |
| Sau3AI | GATC | 4 cut(s) | 69, 178, 250, 413 |
| Sau96I | GGNCC | 1 cut(s) | 281 |
| SchI | GAGTC | 2 cut(s) | 103, 215 |
| ScrFI | CCNGG | 4 cut(s) | 326, 334, 392, 410 |
| SetI | ASST | 5 cut(s) | 208, 294, 343, 382, 404 |
| SinI | GGWCC | 1 cut(s) | 281 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 122, 266 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| Sse9I | AATT | 2 cut(s) | 146, 439 |
| SsiI | CCGC | 1 cut(s) | 198 |
| StyD4I | CCNGG | 4 cut(s) | 324, 332, 390, 408 |
| TaaI | ACNGT | 2 cut(s) | 8, 23 |
| TaiI | ACGT | 2 cut(s) | 294, 343 |
| TaqI | TCGA | 1 cut(s) | 177 |
| TasI | AATT | 2 cut(s) | 146, 439 |
| Tru1I | TTAA | 3 cut(s) | 143, 264, 442 |
| Tru9I | TTAA | 3 cut(s) | 143, 264, 442 |
| TscAI | CASTG | 1 cut(s) | 119 |
| TseI | GCWGC | 3 cut(s) | 127, 255, 422 |
| TspDTI | ATGAA | 2 cut(s) | 17, 250 |
| TspGWI | ACGGA | 1 cut(s) | 134 |
| TspRI | CASTG | 1 cut(s) | 119 |
| VpaK11BI | GGWCC | 1 cut(s) | 281 |
| VspI | ATTAAT | 1 cut(s) | 264 |