ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 261 |
| AciI | CCGC | 1 cut(s) | 239 |
| AclWI | GGATC | 1 cut(s) | 465 |
| AdeI | CACNNNGTG | 1 cut(s) | 268 |
| AfaI | GTAC | 2 cut(s) | 14, 416 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 130, 197, 240, 495 |
| AflIII | ACRYGT | 1 cut(s) | 376 |
| AgsI | TTSAA | 3 cut(s) | 211, 402, 407 |
| AluBI | AGCT | 2 cut(s) | 250, 437 |
| AluI | AGCT | 2 cut(s) | 250, 437 |
| Alw26I | GTCTC | 1 cut(s) | 415 |
| AlwI | GGATC | 1 cut(s) | 465 |
| ApeKI | GCWGC | 1 cut(s) | 94 |
| AspS9I | GGNCC | 1 cut(s) | 110 |
| AvaII | GGWCC | 1 cut(s) | 110 |
| BanI | GGYRCC | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 373 |
| BbvI | GCAGC | 1 cut(s) | 106 |
| BccI | CCATC | 2 cut(s) | 52, 446 |
| BclI | TGATCA | 1 cut(s) | 55 |
| BcoDI | GTCTC | 1 cut(s) | 415 |
| BfmI | CTRYAG | 1 cut(s) | 350 |
| BisI | GCNGC | 1 cut(s) | 95 |
| BlsI | GCNGC | 1 cut(s) | 96 |
| BmcAI | AGTACT | 1 cut(s) | 416 |
| Bme18I | GGWCC | 1 cut(s) | 110 |
| BmgT120I | GGNCC | 1 cut(s) | 110 |
| BmiI | GGNNCC | 1 cut(s) | 263 |
| BpmI | CTGGAG | 1 cut(s) | 439 |
| BpuEI | CTTGAG | 1 cut(s) | 431 |
| BsaBI | GATNNNNATC | 2 cut(s) | 60, 456 |
| BsaJI | CCNNGG | 1 cut(s) | 113 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 25, 55 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 130, 197, 240, 495 |
| Bse1I | ACTGG | 1 cut(s) | 422 |
| Bse3DI | GCAATG | 1 cut(s) | 263 |
| Bse8I | GATNNNNATC | 2 cut(s) | 60, 456 |
| BseDI | CCNNGG | 1 cut(s) | 113 |
| BseGI | GGATG | 1 cut(s) | 457 |
| BseJI | GATNNNNATC | 2 cut(s) | 60, 456 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 130, 197, 240, 495 |
| BseMI | GCAATG | 1 cut(s) | 263 |
| BseMII | CTCAG | 1 cut(s) | 153 |
| BseNI | ACTGG | 1 cut(s) | 422 |
| BseXI | GCAGC | 1 cut(s) | 106 |
| BshNI | GGYRCC | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 130, 197, 240, 495 |
| BsmAI | GTCTC | 1 cut(s) | 415 |
| Bsp1286I | GDGCHC | 1 cut(s) | 373 |
| Bsp143I | GATC | 5 cut(s) | 55, 88, 165, 428, 457 |
| BspACI | CCGC | 1 cut(s) | 239 |
| BspCNI | CTCAG | 1 cut(s) | 154 |
| BspLI | GGNNCC | 1 cut(s) | 263 |
| BspMAI | CTGCAG | 1 cut(s) | 354 |
| BspPI | GGATC | 1 cut(s) | 465 |
| BspT107I | GGYRCC | 1 cut(s) | 261 |
| BsrDI | GCAATG | 1 cut(s) | 263 |
| BsrI | ACTGG | 1 cut(s) | 422 |
| BssECI | CCNNGG | 1 cut(s) | 113 |
| BssMI | GATC | 5 cut(s) | 55, 88, 165, 428, 457 |
| BssT1I | CCWWGG | 1 cut(s) | 113 |
| BstDEI | CTNAG | 1 cut(s) | 162 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 195, 493 |
| BstF5I | GGATG | 1 cut(s) | 457 |
| BstKTI | GATC | 5 cut(s) | 58, 91, 168, 431, 460 |
| BstMAI | GTCTC | 1 cut(s) | 415 |
| BstMBI | GATC | 5 cut(s) | 55, 88, 165, 428, 457 |
| BstNSI | RCATGY | 1 cut(s) | 380 |
| BstSFI | CTRYAG | 1 cut(s) | 350 |
| BstV1I | GCAGC | 1 cut(s) | 106 |
| BtsCI | GGATG | 1 cut(s) | 457 |
| BtsI | GCAGTG | 1 cut(s) | 347 |
| BtsIMutI | CAGTG | 2 cut(s) | 159, 347 |
| Cfr13I | GGNCC | 1 cut(s) | 110 |
| Csp6I | GTAC | 2 cut(s) | 13, 415 |
| CviAII | CATG | 1 cut(s) | 377 |
| CviJI | RGCY | 5 cut(s) | 250, 371, 437, 445, 488 |
| CviKI_1 | RGCY | 5 cut(s) | 250, 371, 437, 445, 488 |
| CviQI | GTAC | 2 cut(s) | 13, 415 |
| DdeI | CTNAG | 1 cut(s) | 162 |
| DpnI | GATC | 5 cut(s) | 57, 90, 167, 430, 459 |
| DpnII | GATC | 5 cut(s) | 55, 88, 165, 428, 457 |
| DraIII | CACNNNGTG | 1 cut(s) | 268 |
| Eco130I | CCWWGG | 1 cut(s) | 113 |
| Eco24I | GRGCYC | 1 cut(s) | 373 |
| Eco47I | GGWCC | 1 cut(s) | 110 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 195, 493 |
| EcoT14I | CCWWGG | 1 cut(s) | 113 |
| EcoT38I | GRGCYC | 1 cut(s) | 373 |
| ErhI | CCWWGG | 1 cut(s) | 113 |
| FaeI | CATG | 1 cut(s) | 380 |
| FatI | CATG | 1 cut(s) | 376 |
| FauI | CCCGC | 1 cut(s) | 232 |
| FbaI | TGATCA | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 1 cut(s) | 95 |
| FokI | GGATG | 1 cut(s) | 464 |
| FriOI | GRGCYC | 1 cut(s) | 373 |
| Fsp4HI | GCNGC | 1 cut(s) | 95 |
| GluI | GCNGC | 1 cut(s) | 95 |
| GsuI | CTGGAG | 1 cut(s) | 439 |
| Hin1II | CATG | 1 cut(s) | 380 |
| HinfI | GANTC | 1 cut(s) | 388 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| Hpy188III | TCNNGA | 2 cut(s) | 407, 432 |
| HpyAV | CCTTC | 1 cut(s) | 128 |
| HpyCH4IV | ACGT | 1 cut(s) | 175 |
| HpyCH4V | TGCA | 4 cut(s) | 159, 256, 302, 352 |
| HpyF3I | CTNAG | 1 cut(s) | 162 |
| HpySE526I | ACGT | 1 cut(s) | 175 |
| Hsp92II | CATG | 1 cut(s) | 380 |
| Ksp22I | TGATCA | 1 cut(s) | 55 |
| Kzo9I | GATC | 5 cut(s) | 55, 88, 165, 428, 457 |
| LpnPI | CCDG | 4 cut(s) | 23, 183, 403, 481 |
| Lsp1109I | GCAGC | 1 cut(s) | 106 |
| MaeII | ACGT | 1 cut(s) | 175 |
| MalI | GATC | 5 cut(s) | 57, 90, 167, 430, 459 |
| MboI | GATC | 5 cut(s) | 55, 88, 165, 428, 457 |
| MboII | GAAGA | 2 cut(s) | 343, 466 |
| MhlI | GDGCHC | 1 cut(s) | 373 |
| MluCI | AATT | 7 cut(s) | 49, 178, 228, 392, 402, 463, 502 |
| MlyI | GAGTC | 1 cut(s) | 397 |
| MnlI | CCTC | 6 cut(s) | 51, 70, 101, 124, 352, 499 |
| MspA1I | CMGCKG | 1 cut(s) | 239 |
| NdeII | GATC | 5 cut(s) | 55, 88, 165, 428, 457 |
| NlaIII | CATG | 1 cut(s) | 380 |
| NlaIV | GGNNCC | 1 cut(s) | 263 |
| NmeAIII | GCCGAG | 1 cut(s) | 198 |
| NspI | RCATGY | 1 cut(s) | 380 |
| PciI | ACATGT | 1 cut(s) | 376 |
| PkrI | GCNGC | 1 cut(s) | 96 |
| PleI | GAGTC | 1 cut(s) | 396 |
| PpsI | GAGTC | 1 cut(s) | 396 |
| PscI | ACATGT | 1 cut(s) | 376 |
| PspN4I | GGNNCC | 1 cut(s) | 263 |
| PspPI | GGNCC | 1 cut(s) | 110 |
| PstI | CTGCAG | 1 cut(s) | 354 |
| RsaI | GTAC | 2 cut(s) | 14, 416 |
| RsaNI | GTAC | 2 cut(s) | 13, 415 |
| SatI | GCNGC | 1 cut(s) | 95 |
| Sau3AI | GATC | 5 cut(s) | 55, 88, 165, 428, 457 |
| Sau96I | GGNCC | 1 cut(s) | 110 |
| ScaI | AGTACT | 1 cut(s) | 416 |
| SchI | GAGTC | 1 cut(s) | 397 |
| SduI | GDGCHC | 1 cut(s) | 373 |
| SetI | ASST | 9 cut(s) | 12, 81, 112, 139, 178, 193, 252, 340, 439 |
| SfcI | CTRYAG | 1 cut(s) | 350 |
| SinI | GGWCC | 1 cut(s) | 110 |
| SmlI | CTYRAG | 1 cut(s) | 446 |
| SmoI | CTYRAG | 1 cut(s) | 446 |
| Sse9I | AATT | 7 cut(s) | 49, 178, 228, 392, 402, 463, 502 |
| SsiI | CCGC | 1 cut(s) | 239 |
| StyI | CCWWGG | 1 cut(s) | 113 |
| TaiI | ACGT | 1 cut(s) | 178 |
| TasI | AATT | 7 cut(s) | 49, 178, 228, 392, 402, 463, 502 |
| TatI | WGTACW | 1 cut(s) | 414 |
| TscAI | CASTG | 2 cut(s) | 166, 354 |
| TseI | GCWGC | 1 cut(s) | 94 |
| TspDTI | ATGAA | 1 cut(s) | 344 |
| TspGWI | ACGGA | 1 cut(s) | 113 |
| TspRI | CASTG | 2 cut(s) | 166, 354 |
| VpaK11BI | GGWCC | 1 cut(s) | 110 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 195, 493 |
| XceI | RCATGY | 1 cut(s) | 380 |
| ZrmI | AGTACT | 1 cut(s) | 416 |