ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 565 |
| AclWI | GGATC | 1 cut(s) | 300 |
| AcsI | RAATTY | 2 cut(s) | 80, 762 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 58, 395 |
| AgsI | TTSAA | 3 cut(s) | 16, 188, 475 |
| AjnI | CCWGG | 1 cut(s) | 56 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 302, 324, 334, 356 |
| AluBI | AGCT | 4 cut(s) | 101, 336, 415, 550 |
| AluI | AGCT | 4 cut(s) | 101, 336, 415, 550 |
| Alw26I | GTCTC | 1 cut(s) | 28 |
| AlwI | GGATC | 1 cut(s) | 300 |
| AoxI | GGCC | 3 cut(s) | 49, 60, 684 |
| ApaI | GGGCCC | 1 cut(s) | 64 |
| ApeKI | GCWGC | 4 cut(s) | 68, 292, 412, 547 |
| ApoI | RAATTY | 2 cut(s) | 80, 762 |
| AspLEI | GCGC | 1 cut(s) | 437 |
| AspS9I | GGNCC | 4 cut(s) | 50, 60, 61, 627 |
| AsuHPI | GGTGA | 3 cut(s) | 20, 223, 665 |
| AvaII | GGWCC | 1 cut(s) | 627 |
| BaeGI | GKGCMC | 1 cut(s) | 64 |
| BanII | GRGCYC | 2 cut(s) | 64, 756 |
| BbvI | GCAGC | 4 cut(s) | 55, 304, 424, 559 |
| BccI | CCATC | 1 cut(s) | 163 |
| BceAI | ACGGC | 1 cut(s) | 300 |
| BciT130I | CCWGG | 1 cut(s) | 58 |
| BciVI | GTATCC | 1 cut(s) | 149 |
| BcoDI | GTCTC | 1 cut(s) | 28 |
| BfaI | CTAG | 1 cut(s) | 416 |
| BfmI | CTRYAG | 1 cut(s) | 407 |
| BfuI | GTATCC | 1 cut(s) | 149 |
| BisI | GCNGC | 4 cut(s) | 69, 293, 413, 548 |
| BlsI | GCNGC | 4 cut(s) | 70, 294, 414, 549 |
| Bme1390I | CCNGG | 1 cut(s) | 58 |
| Bme18I | GGWCC | 1 cut(s) | 627 |
| BmgT120I | GGNCC | 4 cut(s) | 50, 60, 61, 627 |
| BmiI | GGNNCC | 3 cut(s) | 62, 629, 753 |
| BmrFI | CCNGG | 1 cut(s) | 58 |
| BmrI | ACTGGG | 1 cut(s) | 405 |
| BmuI | ACTGGG | 1 cut(s) | 405 |
| BpmI | CTGGAG | 1 cut(s) | 66 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 57 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 58, 395 |
| Bse1I | ACTGG | 3 cut(s) | 400, 589, 687 |
| Bse3DI | GCAATG | 1 cut(s) | 256 |
| BseBI | CCWGG | 1 cut(s) | 58 |
| BseDI | CCNNGG | 2 cut(s) | 56, 57 |
| BseGI | GGATG | 2 cut(s) | 648, 733 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 58, 395 |
| BseMI | GCAATG | 1 cut(s) | 256 |
| BseMII | CTCAG | 2 cut(s) | 480, 678 |
| BseNI | ACTGG | 3 cut(s) | 400, 589, 687 |
| BseSI | GKGCMC | 1 cut(s) | 64 |
| BseXI | GCAGC | 4 cut(s) | 55, 304, 424, 559 |
| BshFI | GGCC | 3 cut(s) | 51, 62, 686 |
| BslFI | GGGAC | 2 cut(s) | 225, 613 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 58, 395 |
| BsmAI | GTCTC | 1 cut(s) | 28 |
| BsmFI | GGGAC | 2 cut(s) | 225, 613 |
| BsnI | GGCC | 3 cut(s) | 51, 62, 686 |
| Bsp120I | GGGCCC | 1 cut(s) | 60 |
| Bsp1286I | GDGCHC | 2 cut(s) | 64, 756 |
| Bsp143I | GATC | 2 cut(s) | 305, 520 |
| BspANI | GGCC | 3 cut(s) | 51, 62, 686 |
| BspCNI | CTCAG | 2 cut(s) | 481, 677 |
| BspLI | GGNNCC | 3 cut(s) | 62, 629, 753 |
| BspPI | GGATC | 1 cut(s) | 300 |
| BsrDI | GCAATG | 1 cut(s) | 256 |
| BsrI | ACTGG | 3 cut(s) | 400, 589, 687 |
| BssECI | CCNNGG | 2 cut(s) | 56, 57 |
| BssMI | GATC | 2 cut(s) | 305, 520 |
| Bst2UI | CCWGG | 1 cut(s) | 58 |
| BstC8I | GCNNGC | 3 cut(s) | 359, 572, 576 |
| BstDEI | CTNAG | 3 cut(s) | 236, 489, 664 |
| BstF5I | GGATG | 2 cut(s) | 648, 733 |
| BstHHI | GCGC | 1 cut(s) | 437 |
| BstKTI | GATC | 2 cut(s) | 308, 523 |
| BstMAI | GTCTC | 1 cut(s) | 28 |
| BstMBI | GATC | 2 cut(s) | 305, 520 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 68, 342, 412, 751 |
| BstNI | CCWGG | 1 cut(s) | 58 |
| BstNSI | RCATGY | 1 cut(s) | 578 |
| BstSCI | CCNGG | 1 cut(s) | 56 |
| BstSFI | CTRYAG | 1 cut(s) | 407 |
| BstSLI | GKGCMC | 1 cut(s) | 64 |
| BstV1I | GCAGC | 4 cut(s) | 55, 304, 424, 559 |
| BstX2I | RGATCY | 1 cut(s) | 305 |
| BstYI | RGATCY | 1 cut(s) | 305 |
| BsuI | GTATCC | 1 cut(s) | 149 |
| BsuRI | GGCC | 3 cut(s) | 51, 62, 686 |
| BtsCI | GGATG | 2 cut(s) | 648, 733 |
| Cac8I | GCNNGC | 3 cut(s) | 359, 572, 576 |
| CfoI | GCGC | 1 cut(s) | 437 |
| Cfr13I | GGNCC | 4 cut(s) | 50, 60, 61, 627 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 620, 655 |
| CviAII | CATG | 2 cut(s) | 575, 734 |
| DdeI | CTNAG | 3 cut(s) | 236, 489, 664 |
| DpnI | GATC | 2 cut(s) | 307, 522 |
| DpnII | GATC | 2 cut(s) | 305, 520 |
| Eco24I | GRGCYC | 2 cut(s) | 64, 756 |
| Eco47I | GGWCC | 1 cut(s) | 627 |
| EcoO109I | RGGNCCY | 4 cut(s) | 50, 60, 61, 627 |
| EcoRII | CCWGG | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 2 cut(s) | 64, 756 |
| FaeI | CATG | 2 cut(s) | 578, 737 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 498, 530 |
| FaqI | GGGAC | 2 cut(s) | 225, 613 |
| FatI | CATG | 2 cut(s) | 574, 733 |
| Fnu4HI | GCNGC | 4 cut(s) | 69, 293, 413, 548 |
| FokI | GGATG | 2 cut(s) | 655, 740 |
| FriOI | GRGCYC | 2 cut(s) | 64, 756 |
| Fsp4HI | GCNGC | 4 cut(s) | 69, 293, 413, 548 |
| FspBI | CTAG | 1 cut(s) | 416 |
| GlaI | GCGC | 1 cut(s) | 436 |
| GluI | GCNGC | 4 cut(s) | 69, 293, 413, 548 |
| GsuI | CTGGAG | 1 cut(s) | 66 |
| HaeIII | GGCC | 3 cut(s) | 51, 62, 686 |
| HhaI | GCGC | 1 cut(s) | 437 |
| Hin1II | CATG | 2 cut(s) | 578, 737 |
| Hin6I | GCGC | 1 cut(s) | 435 |
| HinP1I | GCGC | 1 cut(s) | 435 |
| HphI | GGTGA | 3 cut(s) | 20, 223, 665 |
| Hpy188I | TCNGA | 1 cut(s) | 247 |
| Hpy188III | TCNNGA | 1 cut(s) | 45 |
| HpyAV | CCTTC | 3 cut(s) | 157, 644, 676 |
| HpyCH4IV | ACGT | 2 cut(s) | 565, 580 |
| HpyCH4V | TGCA | 5 cut(s) | 361, 547, 574, 578, 604 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 68, 342, 412, 751 |
| HpyF3I | CTNAG | 3 cut(s) | 236, 489, 664 |
| HpySE526I | ACGT | 2 cut(s) | 565, 580 |
| Hsp92II | CATG | 2 cut(s) | 578, 737 |
| HspAI | GCGC | 1 cut(s) | 435 |
| Kzo9I | GATC | 2 cut(s) | 305, 520 |
| LmnI | GCTCC | 1 cut(s) | 751 |
| Lsp1109I | GCAGC | 4 cut(s) | 55, 304, 424, 559 |
| MaeI | CTAG | 1 cut(s) | 416 |
| MaeII | ACGT | 2 cut(s) | 565, 580 |
| MaeIII | GTNAC | 3 cut(s) | 8, 581, 591 |
| MalI | GATC | 2 cut(s) | 307, 522 |
| MboI | GATC | 2 cut(s) | 305, 520 |
| MboII | GAAGA | 3 cut(s) | 362, 436, 569 |
| MflI | RGATCY | 1 cut(s) | 305 |
| MhlI | GDGCHC | 2 cut(s) | 64, 756 |
| MluCI | AATT | 5 cut(s) | 80, 248, 270, 739, 762 |
| MmeI | TCCRAC | 3 cut(s) | 394, 432, 729 |
| MnlI | CCTC | 8 cut(s) | 41, 63, 253, 268, 282, 322, 522, 612 |
| MseI | TTAA | 6 cut(s) | 251, 269, 429, 516, 722, 789 |
| MspR9I | CCNGG | 1 cut(s) | 58 |
| MvaI | CCWGG | 1 cut(s) | 58 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 68, 342, 412, 751 |
| NdeII | GATC | 2 cut(s) | 305, 520 |
| NlaIII | CATG | 2 cut(s) | 578, 737 |
| NlaIV | GGNNCC | 3 cut(s) | 62, 629, 753 |
| NmeAIII | GCCGAG | 1 cut(s) | 5 |
| NmuCI | GTSAC | 1 cut(s) | 8 |
| NspI | RCATGY | 1 cut(s) | 578 |
| PaeI | GCATGC | 1 cut(s) | 578 |
| PasI | CCCWGGG | 1 cut(s) | 57 |
| PkrI | GCNGC | 4 cut(s) | 70, 294, 414, 549 |
| PpuMI | RGGWCCY | 1 cut(s) | 627 |
| Psp1406I | AACGTT | 1 cut(s) | 565 |
| Psp5II | RGGWCCY | 1 cut(s) | 627 |
| Psp6I | CCWGG | 1 cut(s) | 56 |
| PspGI | CCWGG | 1 cut(s) | 56 |
| PspN4I | GGNNCC | 3 cut(s) | 62, 629, 753 |
| PspOMI | GGGCCC | 1 cut(s) | 60 |
| PspPI | GGNCC | 4 cut(s) | 50, 60, 61, 627 |
| PspPPI | RGGWCCY | 1 cut(s) | 627 |
| PsuI | RGATCY | 1 cut(s) | 305 |
| SaqAI | TTAA | 6 cut(s) | 251, 269, 429, 516, 722, 789 |
| SatI | GCNGC | 4 cut(s) | 69, 293, 413, 548 |
| Sau3AI | GATC | 2 cut(s) | 305, 520 |
| Sau96I | GGNCC | 4 cut(s) | 50, 60, 61, 627 |
| ScrFI | CCNGG | 1 cut(s) | 58 |
| SduI | GDGCHC | 2 cut(s) | 64, 756 |
| SfcI | CTRYAG | 1 cut(s) | 407 |
| SinI | GGWCC | 1 cut(s) | 627 |
| SphI | GCATGC | 1 cut(s) | 578 |
| Sse9I | AATT | 5 cut(s) | 80, 248, 270, 739, 762 |
| SspMI | CTAG | 1 cut(s) | 416 |
| StyD4I | CCNGG | 1 cut(s) | 56 |
| TaiI | ACGT | 2 cut(s) | 568, 583 |
| TasI | AATT | 5 cut(s) | 80, 248, 270, 739, 762 |
| Tru1I | TTAA | 6 cut(s) | 251, 269, 429, 516, 722, 789 |
| Tru9I | TTAA | 6 cut(s) | 251, 269, 429, 516, 722, 789 |
| TseFI | GTSAC | 1 cut(s) | 8 |
| TseI | GCWGC | 4 cut(s) | 68, 292, 412, 547 |
| Tsp45I | GTSAC | 1 cut(s) | 8 |
| TspDTI | ATGAA | 6 cut(s) | 33, 509, 570, 659, 665, 744 |
| TspGWI | ACGGA | 1 cut(s) | 168 |
| VpaK11BI | GGWCC | 1 cut(s) | 627 |
| XapI | RAATTY | 2 cut(s) | 80, 762 |
| XceI | RCATGY | 1 cut(s) | 578 |
| XspI | CTAG | 1 cut(s) | 416 |