ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 410 |
| Acc36I | ACCTGC | 3 cut(s) | 410, 817, 931 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 211 |
| AccBSI | CCGCTC | 1 cut(s) | 470 |
| AccI | GTMKAC | 1 cut(s) | 554 |
| AccIII | TCCGGA | 1 cut(s) | 458 |
| AciI | CCGC | 6 cut(s) | 113, 468, 491, 519, 900, 905 |
| AclWI | GGATC | 4 cut(s) | 195, 208, 284, 968 |
| AcoI | YGGCCR | 1 cut(s) | 846 |
| AcsI | RAATTY | 2 cut(s) | 234, 942 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 193, 211, 582, 809, 901, 933, 934, 935 |
| AgsI | TTSAA | 2 cut(s) | 83, 430 |
| AjnI | CCWGG | 1 cut(s) | 204 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 610, 642 |
| AluBI | AGCT | 3 cut(s) | 386, 597, 910 |
| AluI | AGCT | 3 cut(s) | 386, 597, 910 |
| Alw21I | GWGCWC | 1 cut(s) | 912 |
| Alw26I | GTCTC | 2 cut(s) | 47, 110 |
| AlwI | GGATC | 4 cut(s) | 195, 208, 284, 968 |
| Aor13HI | TCCGGA | 1 cut(s) | 458 |
| AoxI | GGCC | 1 cut(s) | 846 |
| ApeKI | GCWGC | 3 cut(s) | 217, 338, 386 |
| ApoI | RAATTY | 2 cut(s) | 234, 942 |
| AspLEI | GCGC | 1 cut(s) | 217 |
| AspS9I | GGNCC | 2 cut(s) | 464, 561 |
| AsuC2I | CCSGG | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 1 cut(s) | 434 |
| AsuII | TTCGAA | 1 cut(s) | 616 |
| AvaII | GGWCC | 2 cut(s) | 464, 561 |
| BaeGI | GKGCMC | 1 cut(s) | 382 |
| BalI | TGGCCA | 1 cut(s) | 848 |
| BamHI | GGATCC | 2 cut(s) | 200, 973 |
| BanII | GRGCYC | 2 cut(s) | 67, 912 |
| BauI | CACGAG | 1 cut(s) | 471 |
| Bbv12I | GWGCWC | 1 cut(s) | 912 |
| BbvI | GCAGC | 3 cut(s) | 204, 350, 373 |
| BccI | CCATC | 3 cut(s) | 139, 191, 962 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 815, 849 |
| BciT130I | CCWGG | 1 cut(s) | 206 |
| BciVI | GTATCC | 1 cut(s) | 912 |
| BcnI | CCSGG | 1 cut(s) | 294 |
| BcoDI | GTCTC | 2 cut(s) | 47, 110 |
| BfaI | CTAG | 2 cut(s) | 383, 446 |
| BfmI | CTRYAG | 2 cut(s) | 387, 821 |
| BfoI | RGCGCY | 1 cut(s) | 218 |
| BfuAI | ACCTGC | 3 cut(s) | 410, 817, 931 |
| BfuI | GTATCC | 1 cut(s) | 912 |
| BisI | GCNGC | 5 cut(s) | 218, 339, 387, 492, 520 |
| BlpI | GCTNAGC | 1 cut(s) | 126 |
| BlsI | GCNGC | 5 cut(s) | 219, 340, 388, 493, 521 |
| Bme1390I | CCNGG | 2 cut(s) | 206, 294 |
| Bme18I | GGWCC | 2 cut(s) | 464, 561 |
| BmgT120I | GGNCC | 2 cut(s) | 464, 561 |
| BmiI | GGNNCC | 3 cut(s) | 202, 466, 975 |
| BmrFI | CCNGG | 2 cut(s) | 206, 294 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 126 |
| Bpu14I | TTCGAA | 1 cut(s) | 616 |
| BpuMI | CCSGG | 1 cut(s) | 294 |
| BsaBI | GATNNNNATC | 1 cut(s) | 972 |
| BsaI | GGTCTC | 2 cut(s) | 47, 110 |
| BsaJI | CCNNGG | 5 cut(s) | 204, 205, 407, 576, 722 |
| BsaWI | WCCGGW | 1 cut(s) | 458 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 193, 211, 582, 809, 901, 933, 934, 935 |
| Bse1I | ACTGG | 1 cut(s) | 856 |
| Bse3DI | GCAATG | 1 cut(s) | 19 |
| Bse8I | GATNNNNATC | 1 cut(s) | 972 |
| BseAI | TCCGGA | 1 cut(s) | 458 |
| BseBI | CCWGG | 1 cut(s) | 206 |
| BseDI | CCNNGG | 5 cut(s) | 204, 205, 407, 576, 722 |
| BseGI | GGATG | 3 cut(s) | 202, 888, 973 |
| BseJI | GATNNNNATC | 1 cut(s) | 972 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 193, 211, 582, 809, 901, 933, 934, 935 |
| BseMI | GCAATG | 1 cut(s) | 19 |
| BseMII | CTCAG | 3 cut(s) | 140, 262, 683 |
| BseNI | ACTGG | 1 cut(s) | 856 |
| BseRI | GAGGAG | 1 cut(s) | 758 |
| BseSI | GKGCMC | 1 cut(s) | 382 |
| BseXI | GCAGC | 3 cut(s) | 204, 350, 373 |
| BseYI | CCCAGC | 1 cut(s) | 896 |
| BshFI | GGCC | 1 cut(s) | 848 |
| BsiHKAI | GWGCWC | 1 cut(s) | 912 |
| BsiSI | CCGG | 2 cut(s) | 293, 459 |
| BslFI | GGGAC | 4 cut(s) | 380, 450, 660, 963 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 193, 211, 582, 809, 901, 933, 934, 935 |
| BsmAI | GTCTC | 2 cut(s) | 47, 110 |
| BsmFI | GGGAC | 4 cut(s) | 380, 450, 660, 963 |
| BsmI | GAATGC | 1 cut(s) | 494 |
| BsnI | GGCC | 1 cut(s) | 848 |
| Bso31I | GGTCTC | 2 cut(s) | 47, 110 |
| Bsp119I | TTCGAA | 1 cut(s) | 616 |
| Bsp1286I | GDGCHC | 3 cut(s) | 67, 382, 912 |
| Bsp13I | TCCGGA | 1 cut(s) | 458 |
| Bsp143I | GATC | 6 cut(s) | 73, 102, 200, 244, 289, 973 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 126 |
| BspACI | CCGC | 6 cut(s) | 113, 468, 491, 519, 900, 905 |
| BspANI | GGCC | 1 cut(s) | 848 |
| BspCNI | CTCAG | 3 cut(s) | 139, 261, 684 |
| BspEI | TCCGGA | 1 cut(s) | 458 |
| BspHI | TCATGA | 1 cut(s) | 190 |
| BspLI | GGNNCC | 3 cut(s) | 202, 466, 975 |
| BspMAI | CTGCAG | 1 cut(s) | 391 |
| BspMI | ACCTGC | 3 cut(s) | 410, 817, 931 |
| BspPI | GGATC | 4 cut(s) | 195, 208, 284, 968 |
| BspT104I | TTCGAA | 1 cut(s) | 616 |
| BspTNI | GGTCTC | 2 cut(s) | 47, 110 |
| BsrBI | CCGCTC | 1 cut(s) | 470 |
| BsrDI | GCAATG | 1 cut(s) | 19 |
| BsrI | ACTGG | 1 cut(s) | 856 |
| BssECI | CCNNGG | 5 cut(s) | 204, 205, 407, 576, 722 |
| BssMI | GATC | 6 cut(s) | 73, 102, 200, 244, 289, 973 |
| BssNAI | GTATAC | 1 cut(s) | 555 |
| BssSI | CACGAG | 1 cut(s) | 471 |
| BssT1I | CCWWGG | 3 cut(s) | 407, 576, 722 |
| Bst1107I | GTATAC | 1 cut(s) | 555 |
| Bst2BI | CACGAG | 1 cut(s) | 471 |
| Bst2UI | CCWGG | 1 cut(s) | 206 |
| Bst4CI | ACNGT | 1 cut(s) | 643 |
| BstBI | TTCGAA | 1 cut(s) | 616 |
| BstDEI | CTNAG | 3 cut(s) | 126, 248, 692 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 807 |
| BstF5I | GGATG | 3 cut(s) | 202, 888, 973 |
| BstH2I | RGCGCY | 1 cut(s) | 218 |
| BstHHI | GCGC | 1 cut(s) | 217 |
| BstKTI | GATC | 6 cut(s) | 76, 105, 203, 247, 292, 976 |
| BstMAI | GTCTC | 2 cut(s) | 47, 110 |
| BstMBI | GATC | 6 cut(s) | 73, 102, 200, 244, 289, 973 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 149, 386, 488 |
| BstNI | CCWGG | 1 cut(s) | 206 |
| BstNSI | RCATGY | 1 cut(s) | 820 |
| BstSCI | CCNGG | 2 cut(s) | 204, 292 |
| BstSFI | CTRYAG | 2 cut(s) | 387, 821 |
| BstSLI | GKGCMC | 1 cut(s) | 382 |
| BstV1I | GCAGC | 3 cut(s) | 204, 350, 373 |
| BstX2I | RGATCY | 2 cut(s) | 200, 973 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 685 |
| BstYI | RGATCY | 2 cut(s) | 200, 973 |
| BstZ17I | GTATAC | 1 cut(s) | 555 |
| BsuI | GTATCC | 1 cut(s) | 912 |
| BsuRI | GGCC | 1 cut(s) | 848 |
| BtsCI | GGATG | 3 cut(s) | 202, 888, 973 |
| BtsIMutI | CAGTG | 1 cut(s) | 849 |
| BveI | ACCTGC | 3 cut(s) | 410, 817, 931 |
| CciI | TCATGA | 1 cut(s) | 190 |
| CfoI | GCGC | 1 cut(s) | 217 |
| Cfr13I | GGNCC | 2 cut(s) | 464, 561 |
| CviAII | CATG | 6 cut(s) | 191, 239, 415, 532, 622, 817 |
| DdeI | CTNAG | 3 cut(s) | 126, 248, 692 |
| DpnI | GATC | 6 cut(s) | 75, 104, 202, 246, 291, 975 |
| DpnII | GATC | 6 cut(s) | 73, 102, 200, 244, 289, 973 |
| EaeI | YGGCCR | 1 cut(s) | 846 |
| EciI | GGCGGA | 2 cut(s) | 128, 920 |
| Ecl136II | GAGCTC | 1 cut(s) | 910 |
| Eco130I | CCWWGG | 3 cut(s) | 407, 576, 722 |
| Eco24I | GRGCYC | 2 cut(s) | 67, 912 |
| Eco31I | GGTCTC | 2 cut(s) | 47, 110 |
| Eco47I | GGWCC | 2 cut(s) | 464, 561 |
| Eco53kI | GAGCTC | 1 cut(s) | 910 |
| EcoICRI | GAGCTC | 1 cut(s) | 910 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 807 |
| EcoO109I | RGGNCCY | 1 cut(s) | 464 |
| EcoRII | CCWGG | 1 cut(s) | 204 |
| EcoT14I | CCWWGG | 3 cut(s) | 407, 576, 722 |
| EcoT38I | GRGCYC | 2 cut(s) | 67, 912 |
| ErhI | CCWWGG | 3 cut(s) | 407, 576, 722 |
| FaeI | CATG | 6 cut(s) | 194, 242, 418, 535, 625, 820 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 299, 331 |
| FaqI | GGGAC | 4 cut(s) | 380, 450, 660, 963 |
| FatI | CATG | 6 cut(s) | 190, 238, 414, 531, 621, 816 |
| FauI | CCCGC | 2 cut(s) | 475, 893 |
| FblI | GTMKAC | 1 cut(s) | 554 |
| Fnu4HI | GCNGC | 5 cut(s) | 218, 339, 387, 492, 520 |
| FokI | GGATG | 2 cut(s) | 209, 895 |
| FriOI | GRGCYC | 2 cut(s) | 67, 912 |
| Fsp4HI | GCNGC | 5 cut(s) | 218, 339, 387, 492, 520 |
| FspBI | CTAG | 2 cut(s) | 383, 446 |
| GlaI | GCGC | 1 cut(s) | 216 |
| GluI | GCNGC | 5 cut(s) | 218, 339, 387, 492, 520 |
| GsaI | CCCAGC | 1 cut(s) | 900 |
| HaeII | RGCGCY | 1 cut(s) | 218 |
| HaeIII | GGCC | 1 cut(s) | 848 |
| HapII | CCGG | 2 cut(s) | 293, 459 |
| HhaI | GCGC | 1 cut(s) | 217 |
| Hin1II | CATG | 6 cut(s) | 194, 242, 418, 535, 625, 820 |
| Hin6I | GCGC | 1 cut(s) | 215 |
| HinP1I | GCGC | 1 cut(s) | 215 |
| HindIII | AAGCTT | 1 cut(s) | 595 |
| HinfI | GANTC | 2 cut(s) | 662, 732 |
| HpaII | CCGG | 2 cut(s) | 293, 459 |
| HphI | GGTGA | 1 cut(s) | 434 |
| Hpy166II | GTNNAC | 3 cut(s) | 299, 555, 573 |
| Hpy188I | TCNGA | 4 cut(s) | 102, 251, 737, 775 |
| Hpy188III | TCNNGA | 2 cut(s) | 191, 459 |
| Hpy8I | GTNNAC | 3 cut(s) | 299, 555, 573 |
| HpyCH4III | ACNGT | 1 cut(s) | 643 |
| HpyCH4V | TGCA | 7 cut(s) | 7, 33, 48, 170, 338, 389, 502 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 149, 386, 488 |
| HpyF3I | CTNAG | 3 cut(s) | 126, 248, 692 |
| Hsp92II | CATG | 6 cut(s) | 194, 242, 418, 535, 625, 820 |
| HspAI | GCGC | 1 cut(s) | 215 |
| Kpn2I | TCCGGA | 1 cut(s) | 458 |
| Kzo9I | GATC | 6 cut(s) | 73, 102, 200, 244, 289, 973 |
| LmnI | GCTCC | 3 cut(s) | 487, 907, 915 |
| Lsp1109I | GCAGC | 3 cut(s) | 204, 350, 373 |
| MaeI | CTAG | 2 cut(s) | 383, 446 |
| MaeIII | GTNAC | 1 cut(s) | 422 |
| MalI | GATC | 6 cut(s) | 75, 104, 202, 246, 291, 975 |
| MbiI | CCGCTC | 1 cut(s) | 470 |
| MboI | GATC | 6 cut(s) | 73, 102, 200, 244, 289, 973 |
| MflI | RGATCY | 2 cut(s) | 200, 973 |
| MhlI | GDGCHC | 3 cut(s) | 67, 382, 912 |
| MlsI | TGGCCA | 1 cut(s) | 848 |
| MluCI | AATT | 6 cut(s) | 28, 83, 234, 372, 790, 942 |
| MluNI | TGGCCA | 1 cut(s) | 848 |
| MmeI | TCCRAC | 1 cut(s) | 588 |
| MnlI | CCTC | 7 cut(s) | 154, 187, 198, 273, 427, 455, 736 |
| Mox20I | TGGCCA | 1 cut(s) | 848 |
| MroI | TCCGGA | 1 cut(s) | 458 |
| MscI | TGGCCA | 1 cut(s) | 848 |
| MseI | TTAA | 2 cut(s) | 86, 371 |
| MslI | CAYNNNNRTG | 6 cut(s) | 195, 273, 530, 683, 759, 881 |
| Msp20I | TGGCCA | 1 cut(s) | 848 |
| MspA1I | CMGCKG | 1 cut(s) | 900 |
| MspI | CCGG | 2 cut(s) | 293, 459 |
| MspR9I | CCNGG | 2 cut(s) | 206, 294 |
| Mva1269I | GAATGC | 1 cut(s) | 494 |
| MvaI | CCWGG | 1 cut(s) | 206 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 149, 386, 488 |
| NciI | CCSGG | 1 cut(s) | 294 |
| NdeII | GATC | 6 cut(s) | 73, 102, 200, 244, 289, 973 |
| NlaIII | CATG | 6 cut(s) | 194, 242, 418, 535, 625, 820 |
| NlaIV | GGNNCC | 3 cut(s) | 202, 466, 975 |
| NmuCI | GTSAC | 1 cut(s) | 422 |
| NspI | RCATGY | 1 cut(s) | 820 |
| NspV | TTCGAA | 1 cut(s) | 616 |
| PagI | TCATGA | 1 cut(s) | 190 |
| PaqCI | CACCTGC | 1 cut(s) | 410 |
| PasI | CCCWGGG | 1 cut(s) | 205 |
| PctI | GAATGC | 1 cut(s) | 494 |
| PfeI | GAWTC | 2 cut(s) | 662, 732 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 211 |
| PkrI | GCNGC | 5 cut(s) | 219, 340, 388, 493, 521 |
| PpuMI | RGGWCCY | 1 cut(s) | 464 |
| Psp124BI | GAGCTC | 1 cut(s) | 912 |
| Psp5II | RGGWCCY | 1 cut(s) | 464 |
| Psp6I | CCWGG | 1 cut(s) | 204 |
| PspFI | CCCAGC | 1 cut(s) | 896 |
| PspGI | CCWGG | 1 cut(s) | 204 |
| PspN4I | GGNNCC | 3 cut(s) | 202, 466, 975 |
| PspPI | GGNCC | 2 cut(s) | 464, 561 |
| PspPPI | RGGWCCY | 1 cut(s) | 464 |
| PstI | CTGCAG | 1 cut(s) | 391 |
| PsuI | RGATCY | 2 cut(s) | 200, 973 |
| RseI | CAYNNNNRTG | 6 cut(s) | 195, 273, 530, 683, 759, 881 |
| SacI | GAGCTC | 1 cut(s) | 912 |
| SaqAI | TTAA | 2 cut(s) | 86, 371 |
| SatI | GCNGC | 5 cut(s) | 218, 339, 387, 492, 520 |
| Sau3AI | GATC | 6 cut(s) | 73, 102, 200, 244, 289, 973 |
| Sau96I | GGNCC | 2 cut(s) | 464, 561 |
| ScrFI | CCNGG | 2 cut(s) | 206, 294 |
| SduI | GDGCHC | 3 cut(s) | 67, 382, 912 |
| SfcI | CTRYAG | 2 cut(s) | 387, 821 |
| SfuI | TTCGAA | 1 cut(s) | 616 |
| SinI | GGWCC | 2 cut(s) | 464, 561 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 195, 273, 530, 683, 759, 881 |
| Sse9I | AATT | 6 cut(s) | 28, 83, 234, 372, 790, 942 |
| SsiI | CCGC | 6 cut(s) | 113, 468, 491, 519, 900, 905 |
| SspMI | CTAG | 2 cut(s) | 383, 446 |
| SstI | GAGCTC | 1 cut(s) | 912 |
| StyD4I | CCNGG | 2 cut(s) | 204, 292 |
| StyI | CCWWGG | 3 cut(s) | 407, 576, 722 |
| TaaI | ACNGT | 1 cut(s) | 643 |
| TaqI | TCGA | 3 cut(s) | 528, 616, 835 |
| TasI | AATT | 6 cut(s) | 28, 83, 234, 372, 790, 942 |
| TauI | GCSGC | 2 cut(s) | 494, 522 |
| TfiI | GAWTC | 2 cut(s) | 662, 732 |
| Tru1I | TTAA | 2 cut(s) | 86, 371 |
| Tru9I | TTAA | 2 cut(s) | 86, 371 |
| TscAI | CASTG | 1 cut(s) | 856 |
| TseFI | GTSAC | 1 cut(s) | 422 |
| TseI | GCWGC | 3 cut(s) | 217, 338, 386 |
| Tsp45I | GTSAC | 1 cut(s) | 422 |
| TspDTI | ATGAA | 5 cut(s) | 227, 514, 675, 777, 881 |
| TspRI | CASTG | 1 cut(s) | 856 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 211 |
| VpaK11BI | GGWCC | 2 cut(s) | 464, 561 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 807 |
| XapI | RAATTY | 2 cut(s) | 234, 942 |
| XceI | RCATGY | 1 cut(s) | 820 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 583 |
| XmiI | GTMKAC | 1 cut(s) | 554 |
| XspI | CTAG | 2 cut(s) | 383, 446 |