Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 251 |
| AatII | GACGTC | 1 cut(s) | 261 |
| AccI | GTMKAC | 2 cut(s) | 72, 255 |
| AcyI | GRCGYC | 1 cut(s) | 258 |
| AfaI | GTAC | 1 cut(s) | 225 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 291 |
| AjiI | CACGTC | 1 cut(s) | 62 |
| AluBI | AGCT | 2 cut(s) | 197, 329 |
| AluI | AGCT | 2 cut(s) | 197, 329 |
| Alw26I | GTCTC | 2 cut(s) | 52, 335 |
| AoxI | GGCC | 1 cut(s) | 167 |
| ApeKI | GCWGC | 2 cut(s) | 10, 368 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 238 |
| AspLEI | GCGC | 2 cut(s) | 10, 283 |
| AspS9I | GGNCC | 2 cut(s) | 168, 244 |
| AvaII | GGWCC | 1 cut(s) | 244 |
| BcoDI | GTCTC | 2 cut(s) | 52, 335 |
| BfaI | CTAG | 1 cut(s) | 373 |
| BfmI | CTRYAG | 1 cut(s) | 264 |
| BfoI | RGCGCY | 2 cut(s) | 11, 284 |
| BisI | GCNGC | 2 cut(s) | 11, 369 |
| BlsI | GCNGC | 2 cut(s) | 12, 370 |
| Bme18I | GGWCC | 1 cut(s) | 244 |
| BmgBI | CACGTC | 1 cut(s) | 62 |
| BmgT120I | GGNCC | 2 cut(s) | 168, 244 |
| BmiI | GGNNCC | 1 cut(s) | 350 |
| BsaAI | YACGTR | 1 cut(s) | 152 |
| BsaHI | GRCGYC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 1 cut(s) | 171 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 291 |
| Bse118I | RCCGGY | 1 cut(s) | 246 |
| Bse1I | ACTGG | 1 cut(s) | 144 |
| BseDI | CCNNGG | 1 cut(s) | 171 |
| BseGI | GGATG | 2 cut(s) | 184, 213 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 291 |
| BseMII | CTCAG | 1 cut(s) | 126 |
| BseNI | ACTGG | 1 cut(s) | 144 |
| BshFI | GGCC | 1 cut(s) | 169 |
| BsiSI | CCGG | 1 cut(s) | 247 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 291 |
| BsmAI | GTCTC | 2 cut(s) | 52, 335 |
| BsmBI | CGTCTC | 1 cut(s) | 52 |
| BsnI | GGCC | 1 cut(s) | 169 |
| Bsp143I | GATC | 1 cut(s) | 331 |
| BspANI | GGCC | 1 cut(s) | 169 |
| BspCNI | CTCAG | 1 cut(s) | 125 |
| BspLI | GGNNCC | 1 cut(s) | 350 |
| BsrFI | RCCGGY | 1 cut(s) | 246 |
| BsrI | ACTGG | 1 cut(s) | 144 |
| BssAI | RCCGGY | 1 cut(s) | 246 |
| BssECI | CCNNGG | 1 cut(s) | 171 |
| BssMI | GATC | 1 cut(s) | 331 |
| BssNI | GRCGYC | 1 cut(s) | 258 |
| BssT1I | CCWWGG | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 1 cut(s) | 185 |
| BstACI | GRCGYC | 1 cut(s) | 258 |
| BstBAI | YACGTR | 1 cut(s) | 152 |
| BstC8I | GCNNGC | 1 cut(s) | 167 |
| BstDEI | CTNAG | 2 cut(s) | 19, 112 |
| BstF5I | GGATG | 2 cut(s) | 184, 213 |
| BstH2I | RGCGCY | 2 cut(s) | 11, 284 |
| BstHHI | GCGC | 2 cut(s) | 10, 283 |
| BstKTI | GATC | 1 cut(s) | 334 |
| BstMAI | GTCTC | 2 cut(s) | 52, 335 |
| BstMBI | GATC | 1 cut(s) | 331 |
| BstNSI | RCATGY | 1 cut(s) | 254 |
| BstSFI | CTRYAG | 1 cut(s) | 264 |
| BstSNI | TACGTA | 1 cut(s) | 152 |
| BsuRI | GGCC | 1 cut(s) | 169 |
| BtrI | CACGTC | 1 cut(s) | 62 |
| BtsCI | GGATG | 2 cut(s) | 184, 213 |
| Cac8I | GCNNGC | 1 cut(s) | 167 |
| CfoI | GCGC | 2 cut(s) | 10, 283 |
| Cfr10I | RCCGGY | 1 cut(s) | 246 |
| Cfr13I | GGNCC | 2 cut(s) | 168, 244 |
| CpoI | CGGWCCG | 1 cut(s) | 244 |
| CseI | GACGC | 1 cut(s) | 224 |
| Csp6I | GTAC | 1 cut(s) | 224 |
| CspI | CGGWCCG | 1 cut(s) | 244 |
| CviAII | CATG | 2 cut(s) | 251, 338 |
| CviJI | RGCY | 6 cut(s) | 165, 169, 197, 298, 329, 371 |
| CviKI_1 | RGCY | 6 cut(s) | 165, 169, 197, 298, 329, 371 |
| CviQI | GTAC | 1 cut(s) | 224 |
| DdeI | CTNAG | 2 cut(s) | 19, 112 |
| DpnI | GATC | 1 cut(s) | 333 |
| DpnII | GATC | 1 cut(s) | 331 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 251 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 251 |
| Eco105I | TACGTA | 1 cut(s) | 152 |
| Eco130I | CCWWGG | 1 cut(s) | 171 |
| Eco47I | GGWCC | 1 cut(s) | 244 |
| EcoT14I | CCWWGG | 1 cut(s) | 171 |
| ErhI | CCWWGG | 1 cut(s) | 171 |
| Esp3I | CGTCTC | 1 cut(s) | 52 |
| FaeI | CATG | 2 cut(s) | 254, 341 |
| FaiI | YATR | 8 cut(s) | 124, 252, 266, 272, 310, 312, 318, 339 |
| FatI | CATG | 2 cut(s) | 250, 337 |
| FblI | GTMKAC | 2 cut(s) | 72, 255 |
| Fnu4HI | GCNGC | 2 cut(s) | 11, 369 |
| FokI | GGATG | 2 cut(s) | 191, 220 |
| Fsp4HI | GCNGC | 2 cut(s) | 11, 369 |
| FspBI | CTAG | 1 cut(s) | 373 |
| GlaI | GCGC | 2 cut(s) | 9, 282 |
| GluI | GCNGC | 2 cut(s) | 11, 369 |
| HaeII | RGCGCY | 2 cut(s) | 11, 284 |
| HaeIII | GGCC | 1 cut(s) | 169 |
| HapII | CCGG | 1 cut(s) | 247 |
| HgaI | GACGC | 1 cut(s) | 224 |
| HhaI | GCGC | 2 cut(s) | 10, 283 |
| Hin1I | GRCGYC | 1 cut(s) | 258 |
| Hin1II | CATG | 2 cut(s) | 254, 341 |
| Hin6I | GCGC | 2 cut(s) | 8, 281 |
| HinP1I | GCGC | 2 cut(s) | 8, 281 |
| HincII | GTYRAC | 2 cut(s) | 73, 256 |
| HindII | GTYRAC | 2 cut(s) | 73, 256 |
| HinfI | GANTC | 3 cut(s) | 15, 79, 228 |
| HpaII | CCGG | 1 cut(s) | 247 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 256 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 233, 244 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 256 |
| Hpy99I | CGWCG | 3 cut(s) | 218, 260, 263 |
| HpyAV | CCTTC | 1 cut(s) | 48 |
| HpyCH4III | ACNGT | 1 cut(s) | 185 |
| HpyCH4IV | ACGT | 3 cut(s) | 61, 151, 258 |
| HpyCH4V | TGCA | 3 cut(s) | 126, 133, 368 |
| HpyF3I | CTNAG | 2 cut(s) | 19, 112 |
| HpySE526I | ACGT | 3 cut(s) | 61, 151, 258 |
| Hsp92I | GRCGYC | 1 cut(s) | 258 |
| Hsp92II | CATG | 2 cut(s) | 254, 341 |
| HspAI | GCGC | 2 cut(s) | 8, 281 |
| Kzo9I | GATC | 1 cut(s) | 331 |
| LpnPI | CCDG | 7 cut(s) | 71, 125, 151, 206, 260, 288, 365 |
| MaeI | CTAG | 1 cut(s) | 373 |
| MaeII | ACGT | 3 cut(s) | 61, 151, 258 |
| MaeIII | GTNAC | 1 cut(s) | 47 |
| MalI | GATC | 1 cut(s) | 333 |
| MboI | GATC | 1 cut(s) | 331 |
| MluCI | AATT | 3 cut(s) | 28, 39, 235 |
| MnlI | CCTC | 4 cut(s) | 29, 169, 288, 351 |
| MroXI | GAANNNNTTC | 1 cut(s) | 238 |
| MspA1I | CMGCKG | 1 cut(s) | 329 |
| MspI | CCGG | 1 cut(s) | 247 |
| NdeII | GATC | 1 cut(s) | 331 |
| NlaIII | CATG | 2 cut(s) | 254, 341 |
| NlaIV | GGNNCC | 1 cut(s) | 350 |
| NspI | RCATGY | 1 cut(s) | 254 |
| PdmI | GAANNNNTTC | 1 cut(s) | 238 |
| PfeI | GAWTC | 3 cut(s) | 15, 79, 228 |
| PkrI | GCNGC | 2 cut(s) | 12, 370 |
| Ppu21I | YACGTR | 1 cut(s) | 152 |
| PspN4I | GGNNCC | 1 cut(s) | 350 |
| PspPI | GGNCC | 2 cut(s) | 168, 244 |
| PvuII | CAGCTG | 1 cut(s) | 329 |
| RsaI | GTAC | 1 cut(s) | 225 |
| RsaNI | GTAC | 1 cut(s) | 224 |
| Rsr2I | CGGWCCG | 1 cut(s) | 244 |
| RsrII | CGGWCCG | 1 cut(s) | 244 |
| SalI | GTCGAC | 2 cut(s) | 71, 254 |
| SatI | GCNGC | 2 cut(s) | 11, 369 |
| Sau3AI | GATC | 1 cut(s) | 331 |
| Sau96I | GGNCC | 2 cut(s) | 168, 244 |
| SetI | ASST | 8 cut(s) | 64, 154, 162, 199, 225, 261, 331, 354 |
| SfcI | CTRYAG | 1 cut(s) | 264 |
| SinI | GGWCC | 1 cut(s) | 244 |
| SnaBI | TACGTA | 1 cut(s) | 152 |
| Sse9I | AATT | 3 cut(s) | 28, 39, 235 |
| SspMI | CTAG | 1 cut(s) | 373 |
| StyI | CCWWGG | 1 cut(s) | 171 |
| TaaI | ACNGT | 1 cut(s) | 185 |
| TaiI | ACGT | 3 cut(s) | 64, 154, 261 |
| TaqI | TCGA | 5 cut(s) | 34, 72, 82, 255, 334 |
| TasI | AATT | 3 cut(s) | 28, 39, 235 |
| TfiI | GAWTC | 3 cut(s) | 15, 79, 228 |
| TseI | GCWGC | 2 cut(s) | 10, 368 |
| TspDTI | ATGAA | 2 cut(s) | 224, 303 |
| VpaK11BI | GGWCC | 1 cut(s) | 244 |
| XceI | RCATGY | 1 cut(s) | 254 |
| XmiI | GTMKAC | 2 cut(s) | 72, 255 |
| XmnI | GAANNNNTTC | 1 cut(s) | 238 |
| XspI | CTAG | 1 cut(s) | 373 |
| ZraI | GACGTC | 1 cut(s) | 259 |